4NQLA

The crystal structure of the dub domain of amsh orthologue, sst2 from s. pombe, in complex with lysine 63-linked diubiquitin
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
187
structure length
187
Chain Sequence
FKIHAYTEGGKPLRTIYLPKLLKKVFLDVVKPNTKKNLATCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKHNLLTLGWIHTHPTQTCFMSSVALHTHCSYQLMLPEAIAIVMAPSKNTSGIFRLLDPEGLQTIVKCRKPGLFHPHEGKVYTMVAQPGHVREINSKLQVVDLRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/protein binding
molecule keywords AMSH-like protease sst2
publication title Insights into the mechanism of deubiquitination by JAMM deubiquitinases from cocrystal structures of the enzyme with the substrate and product.
pubmed doi rcsb
source organism Schizosaccharomyces pombe
total genus 51
structure length 187
sequence length 187
ec nomenclature ec 3.4.19.-:
pdb deposition date 2013-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01398 JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 4nqlA00
3E1UA 5DCAJ 2O96A 4OCLA 2B3JA 4K1RA 4F3WA 4MSDA 4OCMA 4NQLA 4ZFTA 1MQ0A 1R5TA 1R5XA 5CW6A 2FR6A 4OWPB 4OCNA 1RB7A 3OJ6A 4LD2A 4MSMA 4G3MA 4PQTA 2KKSA 1UX0A 1WWRA 2NX8A 2W4LA 1P6OA 2OG4A 2PW9A 3B8FA 4LCOA 1UWZA 3OCQA 4KITC 4D10F 4E0QA 4BGDC 3EX8A 2NYTA 1WKQA 1ZABA 4LCNA 4LC5A 4O8XB 2Z3IA 1CTTA 2ZNVA 4P9CA 1YSDA 4MSQA 4O8YB 5C2OA 1VQ2A 4MS7A 4ZD4A 3ZPGA 1AF2A 4JXEA 4P9EA 2Z3GA 3R2NA 4F7OA 2HVVA 1WN5A 3G8QA 2B3ZA 4ZFRA 2RPZA 2A8NA 1Z3AA 2P8RA 4EG2A 1WN6A 4ZD5A 1OI0A 2ZNRA 2HVWA 2O7PA 3RZVA 4QFTA 3DH1A 3SBGA 1YSBA 1CTUA 2HXVA 1UX1A 2G6VA 2QLCA 3RZUA 2Z3HA 4LD4A 2D5NA 4HRWA 4MSJA 4OCLB 4ILGC 4WIFA 4I43B 4OCMB 2G84A 2Z3JA 5GAOA 5M52C 4HRQA 2O3KA 4OWPA 3MPZA 4WIGA 3ZEFB 4OCNB 4LCPA 3IJFX 4P9DA 5M59B 1UAQA 3DMOA 2KCQA 2FR5A 1JTKA 2OBCA 2P87A 4O8XA 1TIYA 1OX7A 2D30A 4O8YA 1ALNA 2O95A 3ZPCA
chains in the Genus database with same CATH superfamily
1THZA 3E1UA 5DCAJ 2O96A 4OCLA 2B3JA 4K1RA 4F3WA 4MSDA 1G8MA 4OCMA 4NQLA 4ZFTA 1PKXA 1MQ0A 1P4RA 1R5TA 1R5XA 3VX8A 5CW6A 2FR6A 4OWPB 4OCNA 1RB7A 3OJ6A 4LD2A 4MSMA 4G3MA 4PQTA 2KKSA 1UX0A 1WWRA 2NX8A 2W4LA 1P6OA 2OG4A 2PW9A 3B8FA 4LCOA 1UWZA 3OCQA 4KITC 4D10F 4E0QA 4BGDC 3EX8A 2NYTA 1WKQA 1ZABA 4LCNA 4LC5A 4O8XB 2Z3IA 1CTTA 2ZNVA 4P9CA 1YSDA 4MSQA 4O8YB 5C2OA 1VQ2A 4MS7A 4ZD4A 3ZPGA 1AF2A 4JXEA 3ZZMA 4P9EA 2Z3GA 3R2NA 2IU0A 4F7OA 2HVVA 1WN5A 3G8QA 2B3ZA 4ZFRA 2RPZA 2A8NA 1Z3AA 2P8RA 4EG2A 1WN6A 4ZD5A 1OI0A 2ZNRA 2HVWA 4EHIA 2O7PA 3BH1A 3RZVA 4QFTA 3DH1A 3SBGA 1YSBA 1CTUA 2HXVA 1UX1A 2B1IA 2G6VA 4A1OA 2QLCA 3RZUA 2Z3HA 4LD4A 2D5NA 1ZCZA 4HRWA 4MSJA 4OCLB 4ILGC 4WIFA 4I43B 4OCMB 2G84A 2Z3JA 5GAOA 5M52C 4HRQA 2O3KA 2IU3A 3MPZA 4OWPA 4WIGA 1OZ0A 3ZEFB 4OCNB 4LCPA 2B1GA 3IJFX 4J6EA 4P9DA 1PL0A 5M59B 1UAQA 3DMOA 2KCQA 2FR5A 1JTKA 2OBCA 2P87A 4O8XA 1TIYA 1OX7A 2D30A 4GGMX 4O8YA 1ALNA 2O95A 1M9NA 3ZPCA 1VK9A
chains in the Genus database with same CATH topology
3E1UA 5DCAJ 2O96A 4OCLA 2B3JA 4K1RA 4F3WA 4MSDA 4OCMA 4NQLA 4ZFTA 1MQ0A 1R5TA 1R5XA 5CW6A 2FR6A 4OWPB 4OCNA 1RB7A 3OJ6A 4LD2A 4MSMA 4G3MA 4PQTA 2KKSA 1UX0A 1WWRA 2NX8A 2W4LA 1P6OA 2OG4A 2PW9A 3B8FA 4LCOA 1UWZA 3OCQA 4KITC 4D10F 4E0QA 4BGDC 3EX8A 2NYTA 1WKQA 1ZABA 4LCNA 4LC5A 4O8XB 2Z3IA 1CTTA 2ZNVA 4P9CA 1YSDA 4MSQA 4O8YB 5C2OA 1VQ2A 4MS7A 4ZD4A 3ZPGA 1AF2A 4JXEA 4P9EA 2Z3GA 3R2NA 4F7OA 2HVVA 1WN5A 3G8QA 2B3ZA 4ZFRA 2RPZA 2A8NA 1Z3AA 2P8RA 4EG2A 1WN6A 4ZD5A 1OI0A 2ZNRA 2HVWA 2O7PA 3RZVA 4QFTA 3DH1A 3SBGA 1YSBA 1CTUA 2HXVA 1UX1A 2G6VA 2QLCA 3RZUA 2Z3HA 4LD4A 2D5NA 4HRWA 4MSJA 4OCLB 4ILGC 4WIFA 4I43B 4OCMB 2G84A 2Z3JA 5GAOA 5M52C 4HRQA 2O3KA 4OWPA 3MPZA 4WIGA 3ZEFB 4OCNB 4LCPA 3IJFX 4P9DA 5M59B 1UAQA 3DMOA 2KCQA 2FR5A 1JTKA 2OBCA 2P87A 4O8XA 1TIYA 1OX7A 2D30A 4O8YA 1ALNA 2O95A 3ZPCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E1U A;  5DCA J;  2O96 A;  4OCL A;  2B3J A;  4K1R A;  4F3W A;  4MSD A;  4OCM A;  4NQL A;  4ZFT A;  1MQ0 A;  1R5T A;  1R5X A;  5CW6 A;  2FR6 A;  4OWP B;  4OCN A;  1RB7 A;  3OJ6 A;  4LD2 A;  4MSM A;  4G3M A;  4PQT A;  2KKS A;  1UX0 A;  1WWR A;  2NX8 A;  2W4L A;  1P6O A;  2OG4 A;  2PW9 A;  3B8F A;  4LCO A;  1UWZ A;  3OCQ A;  4KIT C;  4D10 F;  4E0Q A;  4BGD C;  3EX8 A;  2NYT A;  1WKQ A;  1ZAB A;  4LCN A;  4LC5 A;  4O8X B;  2Z3I A;  1CTT A;  2ZNV A;  4P9C A;  1YSD A;  4MSQ A;  4O8Y B;  5C2O A;  1VQ2 A;  4MS7 A;  4ZD4 A;  3ZPG A;  1AF2 A;  4JXE A;  4P9E A;  2Z3G A;  3R2N A;  4F7O A;  2HVV A;  1WN5 A;  3G8Q A;  2B3Z A;  4ZFR A;  2RPZ A;  2A8N A;  1Z3A A;  2P8R A;  4EG2 A;  1WN6 A;  4ZD5 A;  1OI0 A;  2ZNR A;  2HVW A;  2O7P A;  3RZV A;  4QFT A;  3DH1 A;  3SBG A;  1YSB A;  1CTU A;  2HXV A;  1UX1 A;  2G6V A;  2QLC A;  3RZU A;  2Z3H A;  4LD4 A;  2D5N A;  4HRW A;  4MSJ A;  4OCL B;  4ILG C;  4WIF A;  4I43 B;  4OCM B;  2G84 A;  2Z3J A;  5GAO A;  5M52 C;  4HRQ A;  2O3K A;  4OWP A;  3MPZ A;  4WIG A;  3ZEF B;  4OCN B;  4LCP A;  3IJF X;  4P9D A;  5M59 B;  1UAQ A;  3DMO A;  2KCQ A;  2FR5 A;  1JTK A;  2OBC A;  2P87 A;  4O8X A;  1TIY A;  1OX7 A;  2D30 A;  4O8Y A;  1ALN A;  2O95 A;  3ZPC A; 
#chains in the Genus database with same CATH topology
 1THZ A;  3E1U A;  5DCA J;  2O96 A;  4OCL A;  2B3J A;  4K1R A;  4F3W A;  4MSD A;  1G8M A;  4OCM A;  4NQL A;  4ZFT A;  1PKX A;  1MQ0 A;  1P4R A;  1R5T A;  1R5X A;  3VX8 A;  5CW6 A;  2FR6 A;  4OWP B;  4OCN A;  1RB7 A;  3OJ6 A;  4LD2 A;  4MSM A;  4G3M A;  4PQT A;  2KKS A;  1UX0 A;  1WWR A;  2NX8 A;  2W4L A;  1P6O A;  2OG4 A;  2PW9 A;  3B8F A;  4LCO A;  1UWZ A;  3OCQ A;  4KIT C;  4D10 F;  4E0Q A;  4BGD C;  3EX8 A;  2NYT A;  1WKQ A;  1ZAB A;  4LCN A;  4LC5 A;  4O8X B;  2Z3I A;  1CTT A;  2ZNV A;  4P9C A;  1YSD A;  4MSQ A;  4O8Y B;  5C2O A;  1VQ2 A;  4MS7 A;  4ZD4 A;  3ZPG A;  1AF2 A;  4JXE A;  3ZZM A;  4P9E A;  2Z3G A;  3R2N A;  2IU0 A;  4F7O A;  2HVV A;  1WN5 A;  3G8Q A;  2B3Z A;  4ZFR A;  2RPZ A;  2A8N A;  1Z3A A;  2P8R A;  4EG2 A;  1WN6 A;  4ZD5 A;  1OI0 A;  2ZNR A;  2HVW A;  4EHI A;  2O7P A;  3BH1 A;  3RZV A;  4QFT A;  3DH1 A;  3SBG A;  1YSB A;  1CTU A;  2HXV A;  1UX1 A;  2B1I A;  2G6V A;  4A1O A;  2QLC A;  3RZU A;  2Z3H A;  4LD4 A;  2D5N A;  1ZCZ A;  4HRW A;  4MSJ A;  4OCL B;  4ILG C;  4WIF A;  4I43 B;  4OCM B;  2G84 A;  2Z3J A;  5GAO A;  5M52 C;  4HRQ A;  2O3K A;  2IU3 A;  3MPZ A;  4OWP A;  4WIG A;  1OZ0 A;  3ZEF B;  4OCN B;  4LCP A;  2B1G A;  3IJF X;  4J6E A;  4P9D A;  1PL0 A;  5M59 B;  1UAQ A;  3DMO A;  2KCQ A;  2FR5 A;  1JTK A;  2OBC A;  2P87 A;  4O8X A;  1TIY A;  1OX7 A;  2D30 A;  4GGM X;  4O8Y A;  1ALN A;  2O95 A;  1M9N A;  3ZPC A;  1VK9 A; 
#chains in the Genus database with same CATH homology
 3E1U A;  5DCA J;  2O96 A;  4OCL A;  2B3J A;  4K1R A;  4F3W A;  4MSD A;  4OCM A;  4NQL A;  4ZFT A;  1MQ0 A;  1R5T A;  1R5X A;  5CW6 A;  2FR6 A;  4OWP B;  4OCN A;  1RB7 A;  3OJ6 A;  4LD2 A;  4MSM A;  4G3M A;  4PQT A;  2KKS A;  1UX0 A;  1WWR A;  2NX8 A;  2W4L A;  1P6O A;  2OG4 A;  2PW9 A;  3B8F A;  4LCO A;  1UWZ A;  3OCQ A;  4KIT C;  4D10 F;  4E0Q A;  4BGD C;  3EX8 A;  2NYT A;  1WKQ A;  1ZAB A;  4LCN A;  4LC5 A;  4O8X B;  2Z3I A;  1CTT A;  2ZNV A;  4P9C A;  1YSD A;  4MSQ A;  4O8Y B;  5C2O A;  1VQ2 A;  4MS7 A;  4ZD4 A;  3ZPG A;  1AF2 A;  4JXE A;  4P9E A;  2Z3G A;  3R2N A;  4F7O A;  2HVV A;  1WN5 A;  3G8Q A;  2B3Z A;  4ZFR A;  2RPZ A;  2A8N A;  1Z3A A;  2P8R A;  4EG2 A;  1WN6 A;  4ZD5 A;  1OI0 A;  2ZNR A;  2HVW A;  2O7P A;  3RZV A;  4QFT A;  3DH1 A;  3SBG A;  1YSB A;  1CTU A;  2HXV A;  1UX1 A;  2G6V A;  2QLC A;  3RZU A;  2Z3H A;  4LD4 A;  2D5N A;  4HRW A;  4MSJ A;  4OCL B;  4ILG C;  4WIF A;  4I43 B;  4OCM B;  2G84 A;  2Z3J A;  5GAO A;  5M52 C;  4HRQ A;  2O3K A;  4OWP A;  3MPZ A;  4WIG A;  3ZEF B;  4OCN B;  4LCP A;  3IJF X;  4P9D A;  5M59 B;  1UAQ A;  3DMO A;  2KCQ A;  2FR5 A;  1JTK A;  2OBC A;  2P87 A;  4O8X A;  1TIY A;  1OX7 A;  2D30 A;  4O8Y A;  1ALN A;  2O95 A;  3ZPC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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