4NSLA

X-ray crystal structure of adenylosuccinate lyase from salmonella typhimurium
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
456
structure length
446
Chain Sequence
MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADANGYLDTLVANFNEEDAARIKTIERTTNHDVKAVEYFLKEKVAAIPALHDVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQVINAVKDLATQYRDIPLLSRTHGQPATPSTLGKEMANVAYRMERQFRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCIARFNTILIDFDRDVWGYIALNHFKQKTMPHKVNPIDFENSEGNLGLSNAVLHHLANKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRKRVDAEGMKQFIDSLALPEAEKTRLKAMTPANYIGRAVTLVDELK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Adenylosuccinate lyase
publication title Crystallographic and kinetic studies on Adenylosuccinate Lyase from Salmonella typhimurium
rcsb
source organism Salmonella enterica subsp. enterica serovar typhimurium
total genus 155
structure length 446
sequence length 456
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2013-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 4nslA03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4nslA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4nslA02
4NLEA 4NSLA 1TJWA 3R6YA 3R6VA 3RD8A 3R6QA 1HY0A 5F92A 3OCFA 4EFCA 1AUWA 3KDYA 2NYNA 1GKMA 2O7EA 1TJ7A 2RJRA 3NZ4A 4MX2A 4BAAA 2PTQA 1U16A 4C5RA 4ADMA 4HGVA 1C3UA 1J3UA 2HVGA 4APBA 1C3CA 3TV2A 4ADLA 1U15A 1Q5NA 2O7BA 3RRPA 3BHGA 2O6YA 4CQ5A 2PTSA 3QBPA 1W27A 2PTRA 1DOFA 1YFMA 4C5UA 2E9FA 1TJUA 2O7FA 2FUSA 5EYVA 2J91A 3GZHA 4V2QA 2RJSA 5F91A 1KQ7A 4C6GA 1GKJA 1EB4A 1K7WA 2X75A 1K62A 1T6PA 1VDKA 1GK2A 1I0AA 1TJVA 4C5SA 1YISA 5D6BA 1HY1A 2QVEA 1JSWA 1FURA 4APAA 1B8FA 3NO9A 1Y2MA 1XWOA 4BABA 1FUPA 2VD6A 2O78A 2YIIA 2PFMA 4V2RA 1YFEA 5HW2A 2O7DA 3GTDA 1T6JA 4EEIA 2QGAB 3E04A 1FUOA 4FLCA 1DCNA 3OCEA 4FFXA 2OHYA 3UNVA 1RE5A 5EYTA 2NYFA 3C8TA 1GK3A 3CZOA 1FUQA 3KDZA
chains in the Genus database with same CATH superfamily
4NLEA 4NSLA 5M0JA 1TJWA 2JAOA 3R6YA 1XMCA 3R6VA 3RD8A 4YIKA 1MH9A 3R6QA 1HY0A 1Q91A 5F92A 2FENA 1Z4LA 4YIHA 3OCFA 2RCNA 1T9HA 4EFCA 1AUWA 3KDYA 1Z4QA 2NYNA 1GKMA 2O7EA 1TJ7A 2RJRA 3NZ4A 4MX2A 4BAAA 3BWVA 4NFLA 3U19A 2JAWA 4MUMA 2PTQA 4L57A 1U16A 4C5RA 4HGVA 4ADMA 1C3UA 1J3UA 3CRW1 2HVGA 1XL7A 5M0IA 4APBA 4IQJM 1C3CA 1Q92A 3TV2A 4ADLA 1Z4KA 1U15A 2D28C 1Q5NA 2O7BA 2JAUA 2VL7A 3RRPA 3BHGA 2O6YA 4CQ5A 2PTSA 3QBPA 2VSFA 1W27A 3F4TA 4A15A 2PTRA 1DOFA 1YFMA 4C5UA 2E9FA 1TJUA 2O7FA 2FUSA 5EYVA 2J91A 3U13A 3CRVA 3GZHA 3F4SA 4V2QA 2RJSA 5F91A 1KQ7A 4C6GA 4MWOA 2FELA 1GKJA 2I7DA 1EB4A 1K7WA 2X75A 4E88A 1U0LA 1K62A 2JARA 1T6PA 1VDKA 1GK2A 1I0AA 1TJVA 4C5SA 1YISA 5D6BA 1HY1A 1XMDA 2QVEA 1JSWA 1XLYA 4L6AA 1FURA 4APAA 4WNLA 3CI0K 1B8FA 3NO9A 1Y2MA 1XWOA 4L6CA 4BABA 1FUPA 2VD6A 2O78A 2YIIA 2PFMA 3F4RA 4V2RA 1YFEA 5HW2A 2O7DA 3GTDA 1XL8A 1T6JA 1IW7D 4EEIA 2QGAB 3E04A 1FUOA 4FLCA 1Z4MA 2YV5A 1Z4JA 1DCNA 5H8WA 3OCEA 4FFXA 1Z4IA 2OHYA 3UNVA 1RE5A 1Z4PX 2NYFA 5EYTA 3C8TA 1GK3A 3CZOA 1FUQA 2D27A 3KDZA
chains in the Genus database with same CATH topology
4NLEA 4NSLA 1TJWA 3R6YA 3R6VA 3RD8A 3R6QA 1HY0A 5F92A 3OCFA 4EFCA 1AUWA 3KDYA 2NYNA 1GKMA 2O7EA 1TJ7A 2RJRA 3NZ4A 4MX2A 4BAAA 2PTQA 1U16A 4C5RA 4ADMA 4HGVA 1C3UA 1J3UA 2HVGA 4APBA 1C3CA 3TV2A 4ADLA 1U15A 1Q5NA 2O7BA 3RRPA 3BHGA 2O6YA 4CQ5A 2PTSA 3QBPA 1W27A 2PTRA 1DOFA 1YFMA 4C5UA 2E9FA 1TJUA 2O7FA 2FUSA 5EYVA 2J91A 3GZHA 4V2QA 2RJSA 5F91A 1KQ7A 4C6GA 1GKJA 1EB4A 1K7WA 2X75A 1K62A 1T6PA 1VDKA 1GK2A 1I0AA 1TJVA 4C5SA 1YISA 5D6BA 1HY1A 2QVEA 1JSWA 1FURA 4APAA 1B8FA 3NO9A 1Y2MA 1XWOA 4BABA 1FUPA 2VD6A 2O78A 2YIIA 2PFMA 4V2RA 1YFEA 5HW2A 2O7DA 3GTDA 1T6JA 4EEIA 2QGAB 3E04A 1FUOA 4FLCA 1DCNA 3OCEA 4FFXA 2OHYA 3UNVA 1RE5A 5EYTA 2NYFA 3C8TA 1GK3A 3CZOA 1FUQA 3KDZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NLE A;  4NSL A;  1TJW A;  3R6Y A;  3R6V A;  3RD8 A;  3R6Q A;  1HY0 A;  5F92 A;  3OCF A;  4EFC A;  1AUW A;  3KDY A;  2NYN A;  1GKM A;  2O7E A;  1TJ7 A;  2RJR A;  3NZ4 A;  4MX2 A;  4BAA A;  2PTQ A;  1U16 A;  4C5R A;  4ADM A;  4HGV A;  1C3U A;  1J3U A;  2HVG A;  4APB A;  1C3C A;  3TV2 A;  4ADL A;  1U15 A;  1Q5N A;  2O7B A;  3RRP A;  3BHG A;  2O6Y A;  4CQ5 A;  2PTS A;  3QBP A;  1W27 A;  2PTR A;  1DOF A;  1YFM A;  4C5U A;  2E9F A;  1TJU A;  2O7F A;  2FUS A;  5EYV A;  2J91 A;  3GZH A;  4V2Q A;  2RJS A;  5F91 A;  1KQ7 A;  4C6G A;  1GKJ A;  1EB4 A;  1K7W A;  2X75 A;  1K62 A;  1T6P A;  1VDK A;  1GK2 A;  1I0A A;  1TJV A;  4C5S A;  1YIS A;  5D6B A;  1HY1 A;  2QVE A;  1JSW A;  1FUR A;  4APA A;  1B8F A;  3NO9 A;  1Y2M A;  1XWO A;  4BAB A;  1FUP A;  2VD6 A;  2O78 A;  2YII A;  2PFM A;  4V2R A;  1YFE A;  5HW2 A;  2O7D A;  3GTD A;  1T6J A;  4EEI A;  2QGA B;  3E04 A;  1FUO A;  4FLC A;  1DCN A;  3OCE A;  4FFX A;  2OHY A;  3UNV A;  1RE5 A;  5EYT A;  2NYF A;  3C8T A;  1GK3 A;  3CZO A;  1FUQ A;  3KDZ A; 
#chains in the Genus database with same CATH topology
 4NLE A;  4NSL A;  5M0J A;  1TJW A;  2JAO A;  3R6Y A;  1XMC A;  3R6V A;  3RD8 A;  4YIK A;  1MH9 A;  3R6Q A;  1HY0 A;  1Q91 A;  5F92 A;  2FEN A;  1Z4L A;  4YIH A;  3OCF A;  2RCN A;  1T9H A;  4EFC A;  1AUW A;  3KDY A;  1Z4Q A;  2NYN A;  1GKM A;  2O7E A;  1TJ7 A;  2RJR A;  3NZ4 A;  4MX2 A;  4BAA A;  3BWV A;  4NFL A;  3U19 A;  2JAW A;  4MUM A;  2PTQ A;  4L57 A;  1U16 A;  4C5R A;  4HGV A;  4ADM A;  1C3U A;  1J3U A;  3CRW 1;  2HVG A;  1XL7 A;  5M0I A;  4APB A;  4IQJ M;  1C3C A;  1Q92 A;  3TV2 A;  4ADL A;  1Z4K A;  1U15 A;  2D28 C;  1Q5N A;  2O7B A;  2JAU A;  2VL7 A;  3RRP A;  3BHG A;  2O6Y A;  4CQ5 A;  2PTS A;  3QBP A;  2VSF A;  1W27 A;  3F4T A;  4A15 A;  2PTR A;  1DOF A;  1YFM A;  4C5U A;  2E9F A;  1TJU A;  2O7F A;  2FUS A;  5EYV A;  2J91 A;  3U13 A;  3CRV A;  3GZH A;  3F4S A;  4V2Q A;  2RJS A;  5F91 A;  1KQ7 A;  4C6G A;  4MWO A;  2FEL A;  1GKJ A;  2I7D A;  1EB4 A;  1K7W A;  2X75 A;  4E88 A;  1U0L A;  1K62 A;  2JAR A;  1T6P A;  1VDK A;  1GK2 A;  1I0A A;  1TJV A;  4C5S A;  1YIS A;  5D6B A;  1HY1 A;  1XMD A;  2QVE A;  1JSW A;  1XLY A;  4L6A A;  1FUR A;  4APA A;  4WNL A;  3CI0 K;  1B8F A;  3NO9 A;  1Y2M A;  1XWO A;  4L6C A;  4BAB A;  1FUP A;  2VD6 A;  2O78 A;  2YII A;  2PFM A;  3F4R A;  4V2R A;  1YFE A;  5HW2 A;  2O7D A;  3GTD A;  1XL8 A;  1T6J A;  1IW7 D;  4EEI A;  2QGA B;  3E04 A;  1FUO A;  4FLC A;  1Z4M A;  2YV5 A;  1Z4J A;  1DCN A;  5H8W A;  3OCE A;  4FFX A;  1Z4I A;  2OHY A;  3UNV A;  1RE5 A;  1Z4P X;  2NYF A;  5EYT A;  3C8T A;  1GK3 A;  3CZO A;  1FUQ A;  2D27 A;  3KDZ A; 
#chains in the Genus database with same CATH homology
 4NLE A;  4NSL A;  1TJW A;  3R6Y A;  3R6V A;  3RD8 A;  3R6Q A;  1HY0 A;  5F92 A;  3OCF A;  4EFC A;  1AUW A;  3KDY A;  2NYN A;  1GKM A;  2O7E A;  1TJ7 A;  2RJR A;  3NZ4 A;  4MX2 A;  4BAA A;  2PTQ A;  1U16 A;  4C5R A;  4ADM A;  4HGV A;  1C3U A;  1J3U A;  2HVG A;  4APB A;  1C3C A;  3TV2 A;  4ADL A;  1U15 A;  1Q5N A;  2O7B A;  3RRP A;  3BHG A;  2O6Y A;  4CQ5 A;  2PTS A;  3QBP A;  1W27 A;  2PTR A;  1DOF A;  1YFM A;  4C5U A;  2E9F A;  1TJU A;  2O7F A;  2FUS A;  5EYV A;  2J91 A;  3GZH A;  4V2Q A;  2RJS A;  5F91 A;  1KQ7 A;  4C6G A;  1GKJ A;  1EB4 A;  1K7W A;  2X75 A;  1K62 A;  1T6P A;  1VDK A;  1GK2 A;  1I0A A;  1TJV A;  4C5S A;  1YIS A;  5D6B A;  1HY1 A;  2QVE A;  1JSW A;  1FUR A;  4APA A;  1B8F A;  3NO9 A;  1Y2M A;  1XWO A;  4BAB A;  1FUP A;  2VD6 A;  2O78 A;  2YII A;  2PFM A;  4V2R A;  1YFE A;  5HW2 A;  2O7D A;  3GTD A;  1T6J A;  4EEI A;  2QGA B;  3E04 A;  1FUO A;  4FLC A;  1DCN A;  3OCE A;  4FFX A;  2OHY A;  3UNV A;  1RE5 A;  5EYT A;  2NYF A;  3C8T A;  1GK3 A;  3CZO A;  1FUQ A;  3KDZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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