4NUKA

Crystal structure of nickel-bound na-asp-2
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
193
structure length
193
Chain Sequence
KAGCPDNGMSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEPCSKCENCDKEKGLCSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Ancylostoma secreted protein 2
publication title Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2.
pubmed doi rcsb
source organism Necator americanus
total genus 69
structure length 193
sequence length 193
ec nomenclature
pdb deposition date 2013-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00188 CAP Cysteine-rich secretory protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.33.10 Alpha Beta 3-Layer(aba) Sandwich Pathogenesis-related Protein p14a CAP 4nukA00
4D53A 3S6UA 2DDBA 4NUIA 1QNXA 4TPVA 3S6VA 5JYSA 3S6SA 3U3LC 1CFEA 2EPFA 4AIWA 5ETEA 2DDAA 4NUKA 4P27A 1WVRA 4G2UA 3U3UC 4H0AA 3Q2RA 1RC9A 2GIZA 1XTAA 2VZNA 4NUNA 1SMBA 3Q2UA 4LY5A 1XX5A 3U3NC 3NT8A 4NUOA 4IFAA 1U53A 3MZ8A
chains in the Genus database with same CATH superfamily
4D53A 3S6UA 2DDBA 4NUIA 1QNXA 4TPVA 3S6VA 5JYSA 3S6SA 3U3LC 1CFEA 2EPFA 4AIWA 5ETEA 2DDAA 4NUKA 4P27A 1WVRA 4G2UA 3U3UC 4H0AA 3Q2RA 1RC9A 2GIZA 1XTAA 2VZNA 4NUNA 1SMBA 3Q2UA 4LY5A 1XX5A 3U3NC 3NT8A 4NUOA 4IFAA 1U53A 3MZ8A
chains in the Genus database with same CATH topology
4D53A 3S6UA 2DDBA 4NUIA 1QNXA 4TPVA 3S6VA 5JYSA 3S6SA 3U3LC 1CFEA 2EPFA 4AIWA 5ETEA 2DDAA 4NUKA 4P27A 1WVRA 4G2UA 3U3UC 4H0AA 3Q2RA 1RC9A 2GIZA 1XTAA 2VZNA 4NUNA 1SMBA 3Q2UA 4LY5A 1XX5A 3U3NC 3NT8A 4NUOA 4IFAA 1U53A 3MZ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4D53 A;  3S6U A;  2DDB A;  4NUI A;  1QNX A;  4TPV A;  3S6V A;  5JYS A;  3S6S A;  3U3L C;  1CFE A;  2EPF A;  4AIW A;  5ETE A;  2DDA A;  4NUK A;  4P27 A;  1WVR A;  4G2U A;  3U3U C;  4H0A A;  3Q2R A;  1RC9 A;  2GIZ A;  1XTA A;  2VZN A;  4NUN A;  1SMB A;  3Q2U A;  4LY5 A;  1XX5 A;  3U3N C;  3NT8 A;  4NUO A;  4IFA A;  1U53 A;  3MZ8 A; 
#chains in the Genus database with same CATH topology
 4D53 A;  3S6U A;  2DDB A;  4NUI A;  1QNX A;  4TPV A;  3S6V A;  5JYS A;  3S6S A;  3U3L C;  1CFE A;  2EPF A;  4AIW A;  5ETE A;  2DDA A;  4NUK A;  4P27 A;  1WVR A;  4G2U A;  3U3U C;  4H0A A;  3Q2R A;  1RC9 A;  2GIZ A;  1XTA A;  2VZN A;  4NUN A;  1SMB A;  3Q2U A;  4LY5 A;  1XX5 A;  3U3N C;  3NT8 A;  4NUO A;  4IFA A;  1U53 A;  3MZ8 A; 
#chains in the Genus database with same CATH homology
 4D53 A;  3S6U A;  2DDB A;  4NUI A;  1QNX A;  4TPV A;  3S6V A;  5JYS A;  3S6S A;  3U3L C;  1CFE A;  2EPF A;  4AIW A;  5ETE A;  2DDA A;  4NUK A;  4P27 A;  1WVR A;  4G2U A;  3U3U C;  4H0A A;  3Q2R A;  1RC9 A;  2GIZ A;  1XTA A;  2VZN A;  4NUN A;  1SMB A;  3Q2U A;  4LY5 A;  1XX5 A;  3U3N C;  3NT8 A;  4NUO A;  4IFA A;  1U53 A;  3MZ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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