4NWJA

Crystal structure of phosphopglycerate mutase from staphylococcus aureus in 3-phosphoglyceric acid bound form.
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
Knots found
sequence length
504
structure length
504
Chain Sequence
b'AKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism
pubmed doi rcsb
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
source organism Staphylococcus aureus subsp. aureus
molecule tags Isomerase
total genus 189
structure length 504
sequence length 504
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2013-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4nwjA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4nwjA02
3UNYA 1ALIA 1ELZA 3UN3A 1HQAA 4TN0A 3T00A 4UOPA 4CXSA 5LRNA 4LR9A 4GTZA 1N2LA 3UO0A 1Y6VA 3NKNA 1ANIA 3SZZA 3BDGA 1ED9A 3TG0A 3MK0A 4GTXA 5LQQA 3WAXA 1P49A 3KD8A 4LREA 4UPHA 1Y7AA 1E33P 2QZUA 4LRBA 5LIAA 3DYCA 3M8WA 3BDGB 4FDIA 1B8JA 3WBHA 4GTYA 3WAWA 1ELXA 3UN2A 3M8YA 5GOVA 4LQYA 1EW8A 5L0BA 1URAA 2GSOA 4KJGA 4QAXA 2G9YA 4B56A 5HRTA 2W5SA 2W5RA 5C66A 2W5TA 1ALKA 5EGHA 4ZG9A 3WAYA 1KH7A 5IJQA 1EJJA 3IGYB 1EW9A 4FDJA 4ZGAA 5K4PA 2W5VA 3Q3QA 2D1GA 5DLWA 2W8DA 2GA3A 4UPIA 1AJCA 1ELYA 1ALJA 2XRGA 4LRAA 1ZEDA 2X98A 4MIVA 5LRMA 3TX0A 1KH5A 3NKOA 2W5WA 3M8ZA 1AJAA 4KAVA 1AJDA 3LXQA 4CYRA 4KM4A 5DLTA 1N2KA 4LR2A 4CXUA 3OT9A 5KXAA 4ZG6A 3BDFA 2GLQA 1E1ZP 4NWJA 4UORA 1E2SP 4LRDA 4ZG7A 4KJDA 3T02A 1AUKA 3BDHA 1ED8A 2IUCB 4MY4A 3NKQA 1SHQA 5EGEA 1EW2A 4N7TA 1KHJA 1EQJA 1ZEBA 2W8SA 3NKPA 5TJ3A 4UOOA 1KHNA 3M7VA 3T01A 1ZEFA 1O99A 4LR8A 1SHNA 3MK2A 4KAYA 2GSNA 2W5XA 3E2DA 3IDDA 1ANJA 1FSUA 3MK1A 1EI6A 2IUCA 3TWZA 4YR1A 4UPLA 4UPKA 1HDHA 1ALHA 5IJSA 1URBA 3IGZB 2GSUA 5INHA 1KHKA 1KH9A 4MHXA 3NKRA 5GRRA 3B5QA 4CYSA 1E3CP 4CXKA 2W5QA 3WAVA 1AJBA 1KH4A 4NWXA 2VQRA 1KHLA 2RH6A 3DPCA 2ZKTA 3UN5A 2ANHA 4LRFA 1K7HA 4LRCA 4LR7A 4GTWA 3NVLA 3CMRA 3ED4A 5L0KA 5DLVA 1HJKA 1O98A 2XR9A 3NKMA 3SZYA 2IFYA 5L0EA 5AJ9A 3A52A
chains in the Genus database with same CATH superfamily
3UNYA 1ALIA 1ELZA 3UN3A 1HQAA 4TN0A 3T00A 4UOPA 4CXSA 5LRNA 4LR9A 4GTZA 1N2LA 3UO0A 1Y6VA 3NKNA 1ANIA 3SZZA 3BDGA 1ED9A 3TG0A 3MK0A 4GTXA 5LQQA 3WAXA 1P49A 3KD8A 4LREA 4UPHA 1Y7AA 1E33P 2QZUA 4LRBA 5LIAA 3DYCA 3M8WA 3BDGB 4FDIA 1B8JA 3WBHA 4GTYA 3WAWA 1ELXA 3UN2A 3M8YA 5GOVA 4LQYA 1EW8A 5L0BA 1URAA 2GSOA 4KJGA 4QAXA 2G9YA 4B56A 5HRTA 2W5SA 2W5RA 5C66A 2W5TA 1ALKA 5EGHA 4ZG9A 3WAYA 1KH7A 5IJQA 1EJJA 3IGYB 1EW9A 4FDJA 4ZGAA 5K4PA 2W5VA 3Q3QA 2D1GA 5DLWA 2W8DA 2GA3A 4UPIA 1AJCA 1ELYA 1ALJA 2XRGA 4LRAA 1ZEDA 2X98A 4MIVA 5LRMA 3TX0A 1KH5A 3NKOA 2W5WA 3M8ZA 1AJAA 4KAVA 1AJDA 3LXQA 4CYRA 4KM4A 5DLTA 1N2KA 4LR2A 4CXUA 3OT9A 5KXAA 4ZG6A 3BDFA 2GLQA 1E1ZP 4NWJA 4UORA 1E2SP 4LRDA 4ZG7A 4KJDA 3T02A 1AUKA 3BDHA 1ED8A 2IUCB 4MY4A 3NKQA 1SHQA 5EGEA 1EW2A 4N7TA 1KHJA 1EQJA 1ZEBA 2W8SA 3NKPA 5TJ3A 4UOOA 1KHNA 3M7VA 3T01A 1ZEFA 1O99A 4LR8A 1SHNA 3MK2A 4KAYA 2GSNA 2W5XA 3E2DA 3IDDA 1ANJA 1FSUA 3MK1A 1EI6A 2IUCA 3TWZA 4YR1A 4UPLA 4UPKA 1HDHA 1ALHA 5IJSA 1URBA 3IGZB 2GSUA 5INHA 1KHKA 1KH9A 4MHXA 3NKRA 5GRRA 3B5QA 4CYSA 1E3CP 4CXKA 2W5QA 3WAVA 1AJBA 1KH4A 4NWXA 2VQRA 1KHLA 2RH6A 3DPCA 2ZKTA 3UN5A 2ANHA 4LRFA 1K7HA 4LRCA 4LR7A 4GTWA 3NVLA 3CMRA 3ED4A 5L0KA 5DLVA 1HJKA 1O98A 2XR9A 3NKMA 3SZYA 2IFYA 5L0EA 5AJ9A 3A52A
chains in the Genus database with same CATH topology
3UNYA 1ALIA 1ELZA 3UN3A 1HQAA 4TN0A 3T00A 4UOPA 4CXSA 5LRNA 4LR9A 4GTZA 1N2LA 3UO0A 1Y6VA 3NKNA 1ANIA 3SZZA 3BDGA 1ED9A 3TG0A 3MK0A 4GTXA 5LQQA 3WAXA 1P49A 3KD8A 4LREA 4UPHA 1Y7AA 1E33P 2QZUA 4LRBA 5LIAA 3DYCA 3M8WA 3BDGB 4FDIA 1B8JA 3WBHA 4GTYA 3WAWA 1ELXA 3UN2A 3M8YA 5GOVA 4LQYA 1EW8A 5L0BA 1URAA 2GSOA 4KJGA 4QAXA 2G9YA 4B56A 5HRTA 2W5SA 2W5RA 5C66A 2W5TA 1ALKA 5EGHA 4ZG9A 3WAYA 1KH7A 5IJQA 1EJJA 3IGYB 1EW9A 4FDJA 4ZGAA 5K4PA 2W5VA 3Q3QA 2D1GA 5DLWA 2W8DA 2GA3A 4UPIA 1AJCA 1ELYA 1ALJA 2XRGA 4LRAA 1ZEDA 2X98A 4MIVA 5LRMA 3TX0A 1KH5A 3NKOA 2W5WA 3M8ZA 1AJAA 4KAVA 1AJDA 3LXQA 4CYRA 4KM4A 5DLTA 1N2KA 4LR2A 4CXUA 3OT9A 5KXAA 4ZG6A 3BDFA 2GLQA 1E1ZP 4NWJA 4UORA 1E2SP 4LRDA 4ZG7A 4KJDA 3T02A 1AUKA 3BDHA 1ED8A 2IUCB 4MY4A 3NKQA 1SHQA 5EGEA 1EW2A 4N7TA 1KHJA 1EQJA 1ZEBA 2W8SA 3NKPA 5TJ3A 4UOOA 1KHNA 3M7VA 3T01A 1ZEFA 1O99A 4LR8A 1SHNA 3MK2A 4KAYA 2GSNA 2W5XA 3E2DA 3IDDA 1ANJA 1FSUA 3MK1A 1EI6A 2IUCA 3TWZA 4YR1A 4UPLA 4UPKA 1HDHA 1ALHA 5IJSA 1URBA 3IGZB 2GSUA 5INHA 1KHKA 1KH9A 4MHXA 3NKRA 5GRRA 3B5QA 4CYSA 1E3CP 4CXKA 2W5QA 3WAVA 1AJBA 1KH4A 4NWXA 2VQRA 1KHLA 2RH6A 3DPCA 2ZKTA 3UN5A 2ANHA 4LRFA 1K7HA 4LRCA 4LR7A 4GTWA 3NVLA 3CMRA 3ED4A 5L0KA 5DLVA 1HJKA 1O98A 2XR9A 3NKMA 3SZYA 2IFYA 5L0EA 5AJ9A 3A52A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UNY A;  1ALI A;  1ELZ A;  3UN3 A;  1HQA A;  4TN0 A;  3T00 A;  4UOP A;  4CXS A;  5LRN A;  4LR9 A;  4GTZ A;  1N2L A;  3UO0 A;  1Y6V A;  3NKN A;  1ANI A;  3SZZ A;  3BDG A;  1ED9 A;  3TG0 A;  3MK0 A;  4GTX A;  5LQQ A;  3WAX A;  1P49 A;  3KD8 A;  4LRE A;  4UPH A;  1Y7A A;  1E33 P;  2QZU A;  4LRB A;  5LIA A;  3DYC A;  3M8W A;  3BDG B;  4FDI A;  1B8J A;  3WBH A;  4GTY A;  3WAW A;  1ELX A;  3UN2 A;  3M8Y A;  5GOV A;  4LQY A;  1EW8 A;  5L0B A;  1URA A;  2GSO A;  4KJG A;  4QAX A;  2G9Y A;  4B56 A;  5HRT A;  2W5S A;  2W5R A;  5C66 A;  2W5T A;  1ALK A;  5EGH A;  4ZG9 A;  3WAY A;  1KH7 A;  5IJQ A;  1EJJ A;  3IGY B;  1EW9 A;  4FDJ A;  4ZGA A;  5K4P A;  2W5V A;  3Q3Q A;  2D1G A;  5DLW A;  2W8D A;  2GA3 A;  4UPI A;  1AJC A;  1ELY A;  1ALJ A;  2XRG A;  4LRA A;  1ZED A;  2X98 A;  4MIV A;  5LRM A;  3TX0 A;  1KH5 A;  3NKO A;  2W5W A;  3M8Z A;  1AJA A;  4KAV A;  1AJD A;  3LXQ A;  4CYR A;  4KM4 A;  5DLT A;  1N2K A;  4LR2 A;  4CXU A;  3OT9 A;  5KXA A;  4ZG6 A;  3BDF A;  2GLQ A;  1E1Z P;  4NWJ A;  4UOR A;  1E2S P;  4LRD A;  4ZG7 A;  4KJD A;  3T02 A;  1AUK A;  3BDH A;  1ED8 A;  2IUC B;  4MY4 A;  3NKQ A;  1SHQ A;  5EGE A;  1EW2 A;  4N7T A;  1KHJ A;  1EQJ A;  1ZEB A;  2W8S A;  3NKP A;  5TJ3 A;  4UOO A;  1KHN A;  3M7V A;  3T01 A;  1ZEF A;  1O99 A;  4LR8 A;  1SHN A;  3MK2 A;  4KAY A;  2GSN A;  2W5X A;  3E2D A;  3IDD A;  1ANJ A;  1FSU A;  3MK1 A;  1EI6 A;  2IUC A;  3TWZ A;  4YR1 A;  4UPL A;  4UPK A;  1HDH A;  1ALH A;  5IJS A;  1URB A;  3IGZ B;  2GSU A;  5INH A;  1KHK A;  1KH9 A;  4MHX A;  3NKR A;  5GRR A;  3B5Q A;  4CYS A;  1E3C P;  4CXK A;  2W5Q A;  3WAV A;  1AJB A;  1KH4 A;  4NWX A;  2VQR A;  1KHL A;  2RH6 A;  3DPC A;  2ZKT A;  3UN5 A;  2ANH A;  4LRF A;  1K7H A;  4LRC A;  4LR7 A;  4GTW A;  3NVL A;  3CMR A;  3ED4 A;  5L0K A;  5DLV A;  1HJK A;  1O98 A;  2XR9 A;  3NKM A;  3SZY A;  2IFY A;  5L0E A;  5AJ9 A;  3A52 A; 
#chains in the Genus database with same CATH topology
 3UNY A;  1ALI A;  1ELZ A;  3UN3 A;  1HQA A;  4TN0 A;  3T00 A;  4UOP A;  4CXS A;  5LRN A;  4LR9 A;  4GTZ A;  1N2L A;  3UO0 A;  1Y6V A;  3NKN A;  1ANI A;  3SZZ A;  3BDG A;  1ED9 A;  3TG0 A;  3MK0 A;  4GTX A;  5LQQ A;  3WAX A;  1P49 A;  3KD8 A;  4LRE A;  4UPH A;  1Y7A A;  1E33 P;  2QZU A;  4LRB A;  5LIA A;  3DYC A;  3M8W A;  3BDG B;  4FDI A;  1B8J A;  3WBH A;  4GTY A;  3WAW A;  1ELX A;  3UN2 A;  3M8Y A;  5GOV A;  4LQY A;  1EW8 A;  5L0B A;  1URA A;  2GSO A;  4KJG A;  4QAX A;  2G9Y A;  4B56 A;  5HRT A;  2W5S A;  2W5R A;  5C66 A;  2W5T A;  1ALK A;  5EGH A;  4ZG9 A;  3WAY A;  1KH7 A;  5IJQ A;  1EJJ A;  3IGY B;  1EW9 A;  4FDJ A;  4ZGA A;  5K4P A;  2W5V A;  3Q3Q A;  2D1G A;  5DLW A;  2W8D A;  2GA3 A;  4UPI A;  1AJC A;  1ELY A;  1ALJ A;  2XRG A;  4LRA A;  1ZED A;  2X98 A;  4MIV A;  5LRM A;  3TX0 A;  1KH5 A;  3NKO A;  2W5W A;  3M8Z A;  1AJA A;  4KAV A;  1AJD A;  3LXQ A;  4CYR A;  4KM4 A;  5DLT A;  1N2K A;  4LR2 A;  4CXU A;  3OT9 A;  5KXA A;  4ZG6 A;  3BDF A;  2GLQ A;  1E1Z P;  4NWJ A;  4UOR A;  1E2S P;  4LRD A;  4ZG7 A;  4KJD A;  3T02 A;  1AUK A;  3BDH A;  1ED8 A;  2IUC B;  4MY4 A;  3NKQ A;  1SHQ A;  5EGE A;  1EW2 A;  4N7T A;  1KHJ A;  1EQJ A;  1ZEB A;  2W8S A;  3NKP A;  5TJ3 A;  4UOO A;  1KHN A;  3M7V A;  3T01 A;  1ZEF A;  1O99 A;  4LR8 A;  1SHN A;  3MK2 A;  4KAY A;  2GSN A;  2W5X A;  3E2D A;  3IDD A;  1ANJ A;  1FSU A;  3MK1 A;  1EI6 A;  2IUC A;  3TWZ A;  4YR1 A;  4UPL A;  4UPK A;  1HDH A;  1ALH A;  5IJS A;  1URB A;  3IGZ B;  2GSU A;  5INH A;  1KHK A;  1KH9 A;  4MHX A;  3NKR A;  5GRR A;  3B5Q A;  4CYS A;  1E3C P;  4CXK A;  2W5Q A;  3WAV A;  1AJB A;  1KH4 A;  4NWX A;  2VQR A;  1KHL A;  2RH6 A;  3DPC A;  2ZKT A;  3UN5 A;  2ANH A;  4LRF A;  1K7H A;  4LRC A;  4LR7 A;  4GTW A;  3NVL A;  3CMR A;  3ED4 A;  5L0K A;  5DLV A;  1HJK A;  1O98 A;  2XR9 A;  3NKM A;  3SZY A;  2IFY A;  5L0E A;  5AJ9 A;  3A52 A; 
#chains in the Genus database with same CATH homology
 3UNY A;  1ALI A;  1ELZ A;  3UN3 A;  1HQA A;  4TN0 A;  3T00 A;  4UOP A;  4CXS A;  5LRN A;  4LR9 A;  4GTZ A;  1N2L A;  3UO0 A;  1Y6V A;  3NKN A;  1ANI A;  3SZZ A;  3BDG A;  1ED9 A;  3TG0 A;  3MK0 A;  4GTX A;  5LQQ A;  3WAX A;  1P49 A;  3KD8 A;  4LRE A;  4UPH A;  1Y7A A;  1E33 P;  2QZU A;  4LRB A;  5LIA A;  3DYC A;  3M8W A;  3BDG B;  4FDI A;  1B8J A;  3WBH A;  4GTY A;  3WAW A;  1ELX A;  3UN2 A;  3M8Y A;  5GOV A;  4LQY A;  1EW8 A;  5L0B A;  1URA A;  2GSO A;  4KJG A;  4QAX A;  2G9Y A;  4B56 A;  5HRT A;  2W5S A;  2W5R A;  5C66 A;  2W5T A;  1ALK A;  5EGH A;  4ZG9 A;  3WAY A;  1KH7 A;  5IJQ A;  1EJJ A;  3IGY B;  1EW9 A;  4FDJ A;  4ZGA A;  5K4P A;  2W5V A;  3Q3Q A;  2D1G A;  5DLW A;  2W8D A;  2GA3 A;  4UPI A;  1AJC A;  1ELY A;  1ALJ A;  2XRG A;  4LRA A;  1ZED A;  2X98 A;  4MIV A;  5LRM A;  3TX0 A;  1KH5 A;  3NKO A;  2W5W A;  3M8Z A;  1AJA A;  4KAV A;  1AJD A;  3LXQ A;  4CYR A;  4KM4 A;  5DLT A;  1N2K A;  4LR2 A;  4CXU A;  3OT9 A;  5KXA A;  4ZG6 A;  3BDF A;  2GLQ A;  1E1Z P;  4NWJ A;  4UOR A;  1E2S P;  4LRD A;  4ZG7 A;  4KJD A;  3T02 A;  1AUK A;  3BDH A;  1ED8 A;  2IUC B;  4MY4 A;  3NKQ A;  1SHQ A;  5EGE A;  1EW2 A;  4N7T A;  1KHJ A;  1EQJ A;  1ZEB A;  2W8S A;  3NKP A;  5TJ3 A;  4UOO A;  1KHN A;  3M7V A;  3T01 A;  1ZEF A;  1O99 A;  4LR8 A;  1SHN A;  3MK2 A;  4KAY A;  2GSN A;  2W5X A;  3E2D A;  3IDD A;  1ANJ A;  1FSU A;  3MK1 A;  1EI6 A;  2IUC A;  3TWZ A;  4YR1 A;  4UPL A;  4UPK A;  1HDH A;  1ALH A;  5IJS A;  1URB A;  3IGZ B;  2GSU A;  5INH A;  1KHK A;  1KH9 A;  4MHX A;  3NKR A;  5GRR A;  3B5Q A;  4CYS A;  1E3C P;  4CXK A;  2W5Q A;  3WAV A;  1AJB A;  1KH4 A;  4NWX A;  2VQR A;  1KHL A;  2RH6 A;  3DPC A;  2ZKT A;  3UN5 A;  2ANH A;  4LRF A;  1K7H A;  4LRC A;  4LR7 A;  4GTW A;  3NVL A;  3CMR A;  3ED4 A;  5L0K A;  5DLV A;  1HJK A;  1O98 A;  2XR9 A;  3NKM A;  3SZY A;  2IFY A;  5L0E A;  5AJ9 A;  3A52 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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