4NWJA

Crystal structure of phosphopglycerate mutase from staphylococcus aureus in 3-phosphoglyceric acid bound form.
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
Knots found
sequence length
504
structure length
504
Chain Sequence
AKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
source organism Staphylococcus aureus subsp. aureus
publication title Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism
pubmed doi rcsb
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
total genus 189
structure length 504
sequence length 504
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2013-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4nwjA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4nwjA02
2W8SA 4GTWA 2X98A 4B56A 3BDGA 3T02A 3OT9A 2W5QA 3WAWA 3IDDA 1E33P 1K7HA 5LRNA 1ANIA 2G9YA 1FSUA 1ALJA 1O98A 4MY4A 1KHNA 5K4PA 3KD8A 1ED9A 1ELXA 4ZG9A 1EQJA 1EW2A 2GA3A 1AJCA 4LRFA 1ALIA 3MK0A 3M8ZA 4KJDA 3TG0A 2W5WA 4UOOA 4CXUA 3UO0A 1SHNA 1N2LA 5TJ3A 1N2KA 5LIAA 1ED8A 3WAYA 4YR1A 1KHJA 4GTYA 5HRTA 3WAXA 1SHQA 3BDGB 3E2DA 4LRBA 5LQQA 3NKMA 3T00A 1ELZA 1KH4A 4FDIA 4LR8A 4LRAA 5GOVA 4ZG6A 4UOPA 5LRMA 4KJGA 2W5TA 3BDHA 3LXQA 1HJKA 3IGZB 3NKOA 3SZYA 3A52A 2W5SA 3TWZA 2GLQA 1HQAA 5L0KA 3UN2A 5AJ9A 3UN5A 1Y7AA 1ZEBA 5DLVA 4UPIA 5KXAA 5DLWA 3MK1A 1Y6VA 3UNYA 1O99A 3BDFA 1ZEFA 4GTZA 4LR2A 3DPCA 3NKQA 1ELYA 1E3CP 5EGHA 4ZGAA 5IJSA 1KH7A 2GSUA 3Q3QA 4QAXA 3TX0A 2ANHA 5L0EA 3NKRA 1EI6A 4LREA 3MK2A 1E2SP 1P49A 2VQRA 3M7VA 5INHA 1EW9A 4ZG7A 4LRDA 5C66A 4UPHA 4UPKA 4TN0A 1HDHA 1KHLA 2W5VA 1AJDA 1B8JA 4LQYA 3CMRA 4MHXA 3B5QA 3T01A 4CXKA 4NWJA 5IJQA 1KHKA 4CYSA 3WBHA 4FDJA 4KAYA 2XR9A 3M8WA 2ZKTA 3IGYB 5DLTA 1KH9A 4UPLA 4NWXA 2W5RA 4CYRA 4LR7A 1E1ZP 1KH5A 1AJBA 3M8YA 3SZZA 3NKNA 1URAA 3UN3A 2IFYA 3DYCA 5L0BA 3ED4A 4LR9A 5EGEA 2GSNA 4N7TA 2D1GA 4UORA 1EJJA 3NVLA 2QZUA 2IUCA 1AUKA 1URBA 2RH6A 2IUCB 2GSOA 4KAVA 2W5XA 3NKPA 4KM4A 1ANJA 2XRGA 1ZEDA 5GRRA 4GTXA 1EW8A 4LRCA 4MIVA 2W8DA 1ALHA 3WAVA 4CXSA 1ALKA 1AJAA
chains in the Genus database with same CATH superfamily
2W8SA 4GTWA 2X98A 4B56A 3BDGA 3T02A 3OT9A 2W5QA 3WAWA 3IDDA 1E33P 1K7HA 5LRNA 1ANIA 2G9YA 1FSUA 1ALJA 1O98A 4MY4A 1KHNA 5K4PA 3KD8A 1ED9A 1ELXA 4ZG9A 1EQJA 1EW2A 2GA3A 1AJCA 4LRFA 1ALIA 3MK0A 3M8ZA 4KJDA 3TG0A 2W5WA 4UOOA 4CXUA 3UO0A 1SHNA 1N2LA 5TJ3A 1N2KA 5LIAA 1ED8A 3WAYA 4YR1A 1KHJA 4GTYA 5HRTA 3WAXA 1SHQA 3BDGB 3E2DA 4LRBA 5LQQA 3NKMA 3T00A 1ELZA 1KH4A 4FDIA 4LR8A 4LRAA 5GOVA 4ZG6A 4UOPA 5LRMA 4KJGA 2W5TA 3BDHA 3LXQA 1HJKA 3IGZB 3NKOA 3SZYA 3A52A 2W5SA 3TWZA 2GLQA 1HQAA 5L0KA 3UN2A 5AJ9A 3UN5A 1Y7AA 1ZEBA 5DLVA 4UPIA 5KXAA 5DLWA 3MK1A 1Y6VA 3UNYA 1O99A 3BDFA 1ZEFA 4GTZA 4LR2A 3DPCA 3NKQA 1ELYA 1E3CP 5EGHA 4ZGAA 5IJSA 1KH7A 2GSUA 3Q3QA 4QAXA 3TX0A 2ANHA 5L0EA 3NKRA 1EI6A 4LREA 3MK2A 1E2SP 1P49A 2VQRA 3M7VA 5INHA 1EW9A 4ZG7A 4LRDA 5C66A 4UPHA 4UPKA 4TN0A 1HDHA 1KHLA 2W5VA 1AJDA 1B8JA 4LQYA 3CMRA 4MHXA 3B5QA 3T01A 4CXKA 4NWJA 5IJQA 1KHKA 4CYSA 3WBHA 4FDJA 4KAYA 2XR9A 3M8WA 2ZKTA 3IGYB 5DLTA 1KH9A 4UPLA 4NWXA 2W5RA 4CYRA 4LR7A 1E1ZP 1KH5A 1AJBA 3M8YA 3SZZA 3NKNA 1URAA 3UN3A 2IFYA 3DYCA 5L0BA 3ED4A 4LR9A 5EGEA 2GSNA 4N7TA 2D1GA 4UORA 1EJJA 3NVLA 2QZUA 2IUCA 1AUKA 1URBA 2RH6A 2IUCB 2GSOA 4KAVA 2W5XA 3NKPA 4KM4A 1ANJA 2XRGA 1ZEDA 5GRRA 4GTXA 1EW8A 4LRCA 4MIVA 2W8DA 1ALHA 3WAVA 4CXSA 1ALKA 1AJAA
chains in the Genus database with same CATH topology
2W8SA 4GTWA 2X98A 4B56A 3BDGA 3T02A 3OT9A 2W5QA 3WAWA 3IDDA 1E33P 1K7HA 5LRNA 1ANIA 2G9YA 1FSUA 1ALJA 1O98A 4MY4A 1KHNA 5K4PA 3KD8A 1ED9A 1ELXA 4ZG9A 1EQJA 1EW2A 2GA3A 1AJCA 4LRFA 1ALIA 3MK0A 3M8ZA 4KJDA 3TG0A 2W5WA 4UOOA 4CXUA 3UO0A 1SHNA 1N2LA 5TJ3A 1N2KA 5LIAA 1ED8A 3WAYA 4YR1A 1KHJA 4GTYA 5HRTA 3WAXA 1SHQA 3BDGB 3E2DA 4LRBA 5LQQA 3NKMA 3T00A 1ELZA 1KH4A 4FDIA 4LR8A 4LRAA 5GOVA 4ZG6A 4UOPA 5LRMA 4KJGA 2W5TA 3BDHA 3LXQA 1HJKA 3IGZB 3NKOA 3SZYA 3A52A 2W5SA 3TWZA 2GLQA 1HQAA 5L0KA 3UN2A 5AJ9A 3UN5A 1Y7AA 1ZEBA 5DLVA 4UPIA 5KXAA 5DLWA 3MK1A 1Y6VA 3UNYA 1O99A 3BDFA 1ZEFA 4GTZA 4LR2A 3DPCA 3NKQA 1ELYA 1E3CP 5EGHA 4ZGAA 5IJSA 1KH7A 2GSUA 3Q3QA 4QAXA 3TX0A 2ANHA 5L0EA 3NKRA 1EI6A 4LREA 3MK2A 1E2SP 1P49A 2VQRA 3M7VA 5INHA 1EW9A 4ZG7A 4LRDA 5C66A 4UPHA 4UPKA 4TN0A 1HDHA 1KHLA 2W5VA 1AJDA 1B8JA 4LQYA 3CMRA 4MHXA 3B5QA 3T01A 4CXKA 4NWJA 5IJQA 1KHKA 4CYSA 3WBHA 4FDJA 4KAYA 2XR9A 3M8WA 2ZKTA 3IGYB 5DLTA 1KH9A 4UPLA 4NWXA 2W5RA 4CYRA 4LR7A 1E1ZP 1KH5A 1AJBA 3M8YA 3SZZA 3NKNA 1URAA 3UN3A 2IFYA 3DYCA 5L0BA 3ED4A 4LR9A 5EGEA 2GSNA 4N7TA 2D1GA 4UORA 1EJJA 3NVLA 2QZUA 2IUCA 1AUKA 1URBA 2RH6A 2IUCB 2GSOA 4KAVA 2W5XA 3NKPA 4KM4A 1ANJA 2XRGA 1ZEDA 5GRRA 4GTXA 1EW8A 4LRCA 4MIVA 2W8DA 1ALHA 3WAVA 4CXSA 1ALKA 1AJAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W8S A;  4GTW A;  2X98 A;  4B56 A;  3BDG A;  3T02 A;  3OT9 A;  2W5Q A;  3WAW A;  3IDD A;  1E33 P;  1K7H A;  5LRN A;  1ANI A;  2G9Y A;  1FSU A;  1ALJ A;  1O98 A;  4MY4 A;  1KHN A;  5K4P A;  3KD8 A;  1ED9 A;  1ELX A;  4ZG9 A;  1EQJ A;  1EW2 A;  2GA3 A;  1AJC A;  4LRF A;  1ALI A;  3MK0 A;  3M8Z A;  4KJD A;  3TG0 A;  2W5W A;  4UOO A;  4CXU A;  3UO0 A;  1SHN A;  1N2L A;  5TJ3 A;  1N2K A;  5LIA A;  1ED8 A;  3WAY A;  4YR1 A;  1KHJ A;  4GTY A;  5HRT A;  3WAX A;  1SHQ A;  3BDG B;  3E2D A;  4LRB A;  5LQQ A;  3NKM A;  3T00 A;  1ELZ A;  1KH4 A;  4FDI A;  4LR8 A;  4LRA A;  5GOV A;  4ZG6 A;  4UOP A;  5LRM A;  4KJG A;  2W5T A;  3BDH A;  3LXQ A;  1HJK A;  3IGZ B;  3NKO A;  3SZY A;  3A52 A;  2W5S A;  3TWZ A;  2GLQ A;  1HQA A;  5L0K A;  3UN2 A;  5AJ9 A;  3UN5 A;  1Y7A A;  1ZEB A;  5DLV A;  4UPI A;  5KXA A;  5DLW A;  3MK1 A;  1Y6V A;  3UNY A;  1O99 A;  3BDF A;  1ZEF A;  4GTZ A;  4LR2 A;  3DPC A;  3NKQ A;  1ELY A;  1E3C P;  5EGH A;  4ZGA A;  5IJS A;  1KH7 A;  2GSU A;  3Q3Q A;  4QAX A;  3TX0 A;  2ANH A;  5L0E A;  3NKR A;  1EI6 A;  4LRE A;  3MK2 A;  1E2S P;  1P49 A;  2VQR A;  3M7V A;  5INH A;  1EW9 A;  4ZG7 A;  4LRD A;  5C66 A;  4UPH A;  4UPK A;  4TN0 A;  1HDH A;  1KHL A;  2W5V A;  1AJD A;  1B8J A;  4LQY A;  3CMR A;  4MHX A;  3B5Q A;  3T01 A;  4CXK A;  4NWJ A;  5IJQ A;  1KHK A;  4CYS A;  3WBH A;  4FDJ A;  4KAY A;  2XR9 A;  3M8W A;  2ZKT A;  3IGY B;  5DLT A;  1KH9 A;  4UPL A;  4NWX A;  2W5R A;  4CYR A;  4LR7 A;  1E1Z P;  1KH5 A;  1AJB A;  3M8Y A;  3SZZ A;  3NKN A;  1URA A;  3UN3 A;  2IFY A;  3DYC A;  5L0B A;  3ED4 A;  4LR9 A;  5EGE A;  2GSN A;  4N7T A;  2D1G A;  4UOR A;  1EJJ A;  3NVL A;  2QZU A;  2IUC A;  1AUK A;  1URB A;  2RH6 A;  2IUC B;  2GSO A;  4KAV A;  2W5X A;  3NKP A;  4KM4 A;  1ANJ A;  2XRG A;  1ZED A;  5GRR A;  4GTX A;  1EW8 A;  4LRC A;  4MIV A;  2W8D A;  1ALH A;  3WAV A;  4CXS A;  1ALK A;  1AJA A; 
#chains in the Genus database with same CATH topology
 2W8S A;  4GTW A;  2X98 A;  4B56 A;  3BDG A;  3T02 A;  3OT9 A;  2W5Q A;  3WAW A;  3IDD A;  1E33 P;  1K7H A;  5LRN A;  1ANI A;  2G9Y A;  1FSU A;  1ALJ A;  1O98 A;  4MY4 A;  1KHN A;  5K4P A;  3KD8 A;  1ED9 A;  1ELX A;  4ZG9 A;  1EQJ A;  1EW2 A;  2GA3 A;  1AJC A;  4LRF A;  1ALI A;  3MK0 A;  3M8Z A;  4KJD A;  3TG0 A;  2W5W A;  4UOO A;  4CXU A;  3UO0 A;  1SHN A;  1N2L A;  5TJ3 A;  1N2K A;  5LIA A;  1ED8 A;  3WAY A;  4YR1 A;  1KHJ A;  4GTY A;  5HRT A;  3WAX A;  1SHQ A;  3BDG B;  3E2D A;  4LRB A;  5LQQ A;  3NKM A;  3T00 A;  1ELZ A;  1KH4 A;  4FDI A;  4LR8 A;  4LRA A;  5GOV A;  4ZG6 A;  4UOP A;  5LRM A;  4KJG A;  2W5T A;  3BDH A;  3LXQ A;  1HJK A;  3IGZ B;  3NKO A;  3SZY A;  3A52 A;  2W5S A;  3TWZ A;  2GLQ A;  1HQA A;  5L0K A;  3UN2 A;  5AJ9 A;  3UN5 A;  1Y7A A;  1ZEB A;  5DLV A;  4UPI A;  5KXA A;  5DLW A;  3MK1 A;  1Y6V A;  3UNY A;  1O99 A;  3BDF A;  1ZEF A;  4GTZ A;  4LR2 A;  3DPC A;  3NKQ A;  1ELY A;  1E3C P;  5EGH A;  4ZGA A;  5IJS A;  1KH7 A;  2GSU A;  3Q3Q A;  4QAX A;  3TX0 A;  2ANH A;  5L0E A;  3NKR A;  1EI6 A;  4LRE A;  3MK2 A;  1E2S P;  1P49 A;  2VQR A;  3M7V A;  5INH A;  1EW9 A;  4ZG7 A;  4LRD A;  5C66 A;  4UPH A;  4UPK A;  4TN0 A;  1HDH A;  1KHL A;  2W5V A;  1AJD A;  1B8J A;  4LQY A;  3CMR A;  4MHX A;  3B5Q A;  3T01 A;  4CXK A;  4NWJ A;  5IJQ A;  1KHK A;  4CYS A;  3WBH A;  4FDJ A;  4KAY A;  2XR9 A;  3M8W A;  2ZKT A;  3IGY B;  5DLT A;  1KH9 A;  4UPL A;  4NWX A;  2W5R A;  4CYR A;  4LR7 A;  1E1Z P;  1KH5 A;  1AJB A;  3M8Y A;  3SZZ A;  3NKN A;  1URA A;  3UN3 A;  2IFY A;  3DYC A;  5L0B A;  3ED4 A;  4LR9 A;  5EGE A;  2GSN A;  4N7T A;  2D1G A;  4UOR A;  1EJJ A;  3NVL A;  2QZU A;  2IUC A;  1AUK A;  1URB A;  2RH6 A;  2IUC B;  2GSO A;  4KAV A;  2W5X A;  3NKP A;  4KM4 A;  1ANJ A;  2XRG A;  1ZED A;  5GRR A;  4GTX A;  1EW8 A;  4LRC A;  4MIV A;  2W8D A;  1ALH A;  3WAV A;  4CXS A;  1ALK A;  1AJA A; 
#chains in the Genus database with same CATH homology
 2W8S A;  4GTW A;  2X98 A;  4B56 A;  3BDG A;  3T02 A;  3OT9 A;  2W5Q A;  3WAW A;  3IDD A;  1E33 P;  1K7H A;  5LRN A;  1ANI A;  2G9Y A;  1FSU A;  1ALJ A;  1O98 A;  4MY4 A;  1KHN A;  5K4P A;  3KD8 A;  1ED9 A;  1ELX A;  4ZG9 A;  1EQJ A;  1EW2 A;  2GA3 A;  1AJC A;  4LRF A;  1ALI A;  3MK0 A;  3M8Z A;  4KJD A;  3TG0 A;  2W5W A;  4UOO A;  4CXU A;  3UO0 A;  1SHN A;  1N2L A;  5TJ3 A;  1N2K A;  5LIA A;  1ED8 A;  3WAY A;  4YR1 A;  1KHJ A;  4GTY A;  5HRT A;  3WAX A;  1SHQ A;  3BDG B;  3E2D A;  4LRB A;  5LQQ A;  3NKM A;  3T00 A;  1ELZ A;  1KH4 A;  4FDI A;  4LR8 A;  4LRA A;  5GOV A;  4ZG6 A;  4UOP A;  5LRM A;  4KJG A;  2W5T A;  3BDH A;  3LXQ A;  1HJK A;  3IGZ B;  3NKO A;  3SZY A;  3A52 A;  2W5S A;  3TWZ A;  2GLQ A;  1HQA A;  5L0K A;  3UN2 A;  5AJ9 A;  3UN5 A;  1Y7A A;  1ZEB A;  5DLV A;  4UPI A;  5KXA A;  5DLW A;  3MK1 A;  1Y6V A;  3UNY A;  1O99 A;  3BDF A;  1ZEF A;  4GTZ A;  4LR2 A;  3DPC A;  3NKQ A;  1ELY A;  1E3C P;  5EGH A;  4ZGA A;  5IJS A;  1KH7 A;  2GSU A;  3Q3Q A;  4QAX A;  3TX0 A;  2ANH A;  5L0E A;  3NKR A;  1EI6 A;  4LRE A;  3MK2 A;  1E2S P;  1P49 A;  2VQR A;  3M7V A;  5INH A;  1EW9 A;  4ZG7 A;  4LRD A;  5C66 A;  4UPH A;  4UPK A;  4TN0 A;  1HDH A;  1KHL A;  2W5V A;  1AJD A;  1B8J A;  4LQY A;  3CMR A;  4MHX A;  3B5Q A;  3T01 A;  4CXK A;  4NWJ A;  5IJQ A;  1KHK A;  4CYS A;  3WBH A;  4FDJ A;  4KAY A;  2XR9 A;  3M8W A;  2ZKT A;  3IGY B;  5DLT A;  1KH9 A;  4UPL A;  4NWX A;  2W5R A;  4CYR A;  4LR7 A;  1E1Z P;  1KH5 A;  1AJB A;  3M8Y A;  3SZZ A;  3NKN A;  1URA A;  3UN3 A;  2IFY A;  3DYC A;  5L0B A;  3ED4 A;  4LR9 A;  5EGE A;  2GSN A;  4N7T A;  2D1G A;  4UOR A;  1EJJ A;  3NVL A;  2QZU A;  2IUC A;  1AUK A;  1URB A;  2RH6 A;  2IUC B;  2GSO A;  4KAV A;  2W5X A;  3NKP A;  4KM4 A;  1ANJ A;  2XRG A;  1ZED A;  5GRR A;  4GTX A;  1EW8 A;  4LRC A;  4MIV A;  2W8D A;  1ALH A;  3WAV A;  4CXS A;  1ALK A;  1AJA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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