4O1VA

Spop promotes tumorigenesis by acting as a key regulatory hub in kidney cancer
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
141
structure length
141
Chain Sequence
SGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Speckle-type POZ protein
publication title SPOP Promotes Tumorigenesis by Acting as a Key Regulatory Hub in Kidney Cancer.
pubmed doi rcsb
source organism Homo sapiens
total genus 28
structure length 141
sequence length 141
ec nomenclature
pdb deposition date 2013-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4o1vA01
1L0AA 1LB5A 4KG9A 1CA9A 1F3VB 2F1WA 3HSVA 4O1VA 2A25A 1CA4A 2AN6A 4X3GA 1YZEA 4CA1A 1D01A 4JJQA 1FLLA 1CZYA 4GJHA 5H9MA 1QSCA 2F1XA 3MQRA 1ZMSA 2CR2A 2F1YA 1KZZA 2FOOA 4YSIA 4I7CA 5E1TA 4K8UA 3HQLA 4M4EA 4GWNA 1D00A 4GWMA 2GKWA 2F1ZA 3IVQA 4C9ZA 1D0AA 2FOPA 3HQMA 3ZJBA 4I7BA 3HU6A 3IVVA 4I7DA 4Z8MA 3HQIA 1FLKA 1LB4A 1RF3A 3MQSC 1YY6A 1D0JA 2FOJA 1CZZA 2XXNA 4GHUA 1K2FA 1LB6A 3IVBA 3HQHA
chains in the Genus database with same CATH superfamily
1L0AA 1LB5A 4KG9A 1CA9A 1F3VB 2F1WA 3HSVA 4O1VA 2A25A 1CA4A 2AN6A 4X3GA 1YZEA 4CA1A 1D01A 4JJQA 1FLLA 1CZYA 4GJHA 5H9MA 1QSCA 2F1XA 3MQRA 1ZMSA 2CR2A 2F1YA 1KZZA 2FOOA 4YSIA 4I7CA 5E1TA 4K8UA 3HQLA 4M4EA 4GWNA 1D00A 4GWMA 2GKWA 2F1ZA 3IVQA 4C9ZA 1D0AA 2FOPA 3HQMA 3ZJBA 4I7BA 3HU6A 3IVVA 4I7DA 4Z8MA 3HQIA 1FLKA 1LB4A 1RF3A 3MQSC 1YY6A 1D0JA 2FOJA 1CZZA 2XXNA 4GHUA 1K2FA 1LB6A 3IVBA 3HQHA
chains in the Genus database with same CATH topology
1L0AA 1LB5A 4KG9A 1CA9A 1F3VB 2F1WA 3HSVA 4O1VA 2A25A 1CA4A 2AN6A 4X3GA 1YZEA 4CA1A 1D01A 4JJQA 1FLLA 1CZYA 4GJHA 5H9MA 1QSCA 2F1XA 3MQRA 1ZMSA 2CR2A 2F1YA 1KZZA 2FOOA 4YSIA 4I7CA 5E1TA 4K8UA 3HQLA 4M4EA 4GWNA 1D00A 4GWMA 2GKWA 2F1ZA 3IVQA 4C9ZA 1D0AA 2FOPA 3HQMA 3ZJBA 4I7BA 3HU6A 3IVVA 4I7DA 4Z8MA 3HQIA 1FLKA 1LB4A 1RF3A 3MQSC 1YY6A 1D0JA 2FOJA 1CZZA 2XXNA 4GHUA 1K2FA 1LB6A 3IVBA 3HQHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L0A A;  1LB5 A;  4KG9 A;  1CA9 A;  1F3V B;  2F1W A;  3HSV A;  4O1V A;  2A25 A;  1CA4 A;  2AN6 A;  4X3G A;  1YZE A;  4CA1 A;  1D01 A;  4JJQ A;  1FLL A;  1CZY A;  4GJH A;  5H9M A;  1QSC A;  2F1X A;  3MQR A;  1ZMS A;  2CR2 A;  2F1Y A;  1KZZ A;  2FOO A;  4YSI A;  4I7C A;  5E1T A;  4K8U A;  3HQL A;  4M4E A;  4GWN A;  1D00 A;  4GWM A;  2GKW A;  2F1Z A;  3IVQ A;  4C9Z A;  1D0A A;  2FOP A;  3HQM A;  3ZJB A;  4I7B A;  3HU6 A;  3IVV A;  4I7D A;  4Z8M A;  3HQI A;  1FLK A;  1LB4 A;  1RF3 A;  3MQS C;  1YY6 A;  1D0J A;  2FOJ A;  1CZZ A;  2XXN A;  4GHU A;  1K2F A;  1LB6 A;  3IVB A;  3HQH A; 
#chains in the Genus database with same CATH topology
 1L0A A;  1LB5 A;  4KG9 A;  1CA9 A;  1F3V B;  2F1W A;  3HSV A;  4O1V A;  2A25 A;  1CA4 A;  2AN6 A;  4X3G A;  1YZE A;  4CA1 A;  1D01 A;  4JJQ A;  1FLL A;  1CZY A;  4GJH A;  5H9M A;  1QSC A;  2F1X A;  3MQR A;  1ZMS A;  2CR2 A;  2F1Y A;  1KZZ A;  2FOO A;  4YSI A;  4I7C A;  5E1T A;  4K8U A;  3HQL A;  4M4E A;  4GWN A;  1D00 A;  4GWM A;  2GKW A;  2F1Z A;  3IVQ A;  4C9Z A;  1D0A A;  2FOP A;  3HQM A;  3ZJB A;  4I7B A;  3HU6 A;  3IVV A;  4I7D A;  4Z8M A;  3HQI A;  1FLK A;  1LB4 A;  1RF3 A;  3MQS C;  1YY6 A;  1D0J A;  2FOJ A;  1CZZ A;  2XXN A;  4GHU A;  1K2F A;  1LB6 A;  3IVB A;  3HQH A; 
#chains in the Genus database with same CATH homology
 1L0A A;  1LB5 A;  4KG9 A;  1CA9 A;  1F3V B;  2F1W A;  3HSV A;  4O1V A;  2A25 A;  1CA4 A;  2AN6 A;  4X3G A;  1YZE A;  4CA1 A;  1D01 A;  4JJQ A;  1FLL A;  1CZY A;  4GJH A;  5H9M A;  1QSC A;  2F1X A;  3MQR A;  1ZMS A;  2CR2 A;  2F1Y A;  1KZZ A;  2FOO A;  4YSI A;  4I7C A;  5E1T A;  4K8U A;  3HQL A;  4M4E A;  4GWN A;  1D00 A;  4GWM A;  2GKW A;  2F1Z A;  3IVQ A;  4C9Z A;  1D0A A;  2FOP A;  3HQM A;  3ZJB A;  4I7B A;  3HU6 A;  3IVV A;  4I7D A;  4Z8M A;  3HQI A;  1FLK A;  1LB4 A;  1RF3 A;  3MQS C;  1YY6 A;  1D0J A;  2FOJ A;  1CZZ A;  2XXN A;  4GHU A;  1K2F A;  1LB6 A;  3IVB A;  3HQH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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