The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
104
|
sequence length |
235
|
structure length |
235
|
Chain Sequence |
VDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for histone mimicry and hijacking of host proteins by influenza virus protein NS1.
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| source organism |
Homo sapiens
|
| molecule keywords |
14-3-3 protein gamma
|
| total genus |
104
|
| structure length |
235
|
| sequence length |
235
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2013-12-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00244 | 14-3-3 | 14-3-3 protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Delta-Endotoxin; domain 1 | 14-3-3 domain |
#chains in the Genus database with same CATH superfamily 4FJ3 A; 4Y32 A; 2BR9 A; 3T0M A; 3SML A; 4DHR A; 4DAU A; 4DHP A; 3T0L A; 5F74 A; 3IQU A; 1QJA A; 4FR3 A; 4Y3B A; 1A38 A; 4F7R A; 3P1P A; 1IB1 A; 5LU2 A; 1A37 A; 4GNT A; 4Y5I A; 3EFZ A; 1QJB A; 2C1J A; 3E6Y A; 5D3E A; 4IEA A; 2B05 A; 4N7G A; 4N7Y A; 5HF3 A; 4J6S A; 3O8I A; 2NPM A; 3P1Q A; 3P1O A; 1O9D A; 3SMN A; 1O9F A; 3SPR A; 1O9E A; 2O98 A; 4DHO A; 3SMO A; 5BY9 A; 2C1N A; 3U9X A; 3UBW A; 4E2E A; 4DHM A; 3CU8 A; 4N84 A; 1O9C A; 5LVZ A; 4DNK A; 2V7D A; 4FL5 A; 4DHQ A; 2C63 A; 5EWZ A; 3SMK A; 3AXY C; 3NKX A; 4HKC A; 2O02 A; 3SMM A; 5LU1 A; 4DHS A; 2BTP A; 3M51 A; 2C74 A; 3UAL A; 4ZQ0 A; 5D2D A; 3SP5 A; 3IQJ A; 3P1S A; 3P1R A; 5D3F A; 3UX0 A; 4BG6 A; 4JC3 A; 1YZ5 A; 3IQV A; 3UZD A; 5IQP A; 4DX0 A; 4QLI A; 3RDH A; 3M50 A; 5EXA A; 5BTV A; 4DHT A; 5LHO A; 4DHU A; 4IHL A; 4DHN A; 4O46 A; 4DAT A; 2O8P A; 2BQ0 A; 4ZDR A; 3LW1 A; 5J31 A; 5LX2 A; 4WRQ A; 4JDD A; 1A4O A; 3P1N A; 2WH0 A; 3MHR A; 2C23 A; 1YWT A; #chains in the Genus database with same CATH topology 4FJ3 A; 4Y32 A; 2BR9 A; 3T0M A; 3SML A; 4DHR A; 4DAU A; 4DHP A; 3T0L A; 5F74 A; 3IQU A; 1QJA A; 4FR3 A; 3CQC A; 4Y3B A; 1A38 A; 4F7R A; 3ZHE B; 1DLC A; 3P1P A; 1IB1 A; 5LU2 A; 1A37 A; 4GNT A; 4Y5I A; 3EFZ A; 1QJB A; 2C1J A; 3E6Y A; 5D3E A; 4IEA A; 4QX1 A; 2B05 A; 4ARX A; 4N7G A; 4N7Y A; 5HF3 A; 4J6S A; 1URJ A; 3O8I A; 4QX0 A; 2NPM A; 3P1Q A; 3P1O A; 4W8J A; 1O9D A; 3SMN A; 1O9F A; 3SPR A; 1O9E A; 2O98 A; 3I4R A; 3SMO A; 4DHO A; 5BY9 A; 2C1N A; 3U9X A; 3UBW A; 4D8M A; 4E2E A; 4DHM A; 3CU8 A; 4N84 A; 1O9C A; 5LVZ A; 4QX2 A; 4DNK A; 2V7D A; 4MOA A; 4FL5 A; 4DHQ A; 2C63 A; 5EWZ A; 3SMK A; 3AXY C; 3NKX A; 4HKC A; 2O02 A; 3SMM A; 5LU1 A; 4DHS A; 2BTP A; 3M51 A; 2C74 A; 3UAL A; 4ZQ0 A; 1S2X A; 5D2D A; 3SP5 A; 3IQJ A; 1CIY A; 4ARY A; 3P1S A; 3P1R A; 5D3F A; 3UX0 A; 4BG6 A; 4JC3 A; 1YZ5 A; 3IQV A; 3UZD A; 5IQP A; 1W99 A; 4DX0 A; 4QLI A; 2C9K A; 3RDH A; 3M50 A; 5EXA A; 5BTV A; 4DHT A; 5LHO A; 4DHU A; 4IHL A; 1I5P A; 4DHN A; 4O46 A; 3X0U A; 4DAT A; 2O8P A; 1JI6 A; 2BQ0 A; 3CQG A; 4ZDR A; 3LW1 A; 5J31 A; 4QX3 A; 5LX2 A; 4WRQ A; 4JDD A; 1A4O A; 3EB7 A; 3P1N A; 2WH0 A; 3MHR A; 2C23 A; 1YWT A; #chains in the Genus database with same CATH homology 4FJ3 A; 4Y32 A; 2BR9 A; 3T0M A; 3SML A; 4DHR A; 4DAU A; 4DHP A; 3T0L A; 5F74 A; 3IQU A; 1QJA A; 4FR3 A; 4Y3B A; 1A38 A; 4F7R A; 3P1P A; 1IB1 A; 5LU2 A; 1A37 A; 4GNT A; 4Y5I A; 3EFZ A; 1QJB A; 2C1J A; 3E6Y A; 5D3E A; 4IEA A; 2B05 A; 4N7G A; 4N7Y A; 5HF3 A; 4J6S A; 3O8I A; 2NPM A; 3P1Q A; 3P1O A; 1O9D A; 3SMN A; 1O9F A; 3SPR A; 1O9E A; 2O98 A; 4DHO A; 3SMO A; 5BY9 A; 2C1N A; 3U9X A; 3UBW A; 4E2E A; 4DHM A; 3CU8 A; 4N84 A; 1O9C A; 5LVZ A; 4DNK A; 2V7D A; 4FL5 A; 4DHQ A; 2C63 A; 5EWZ A; 3SMK A; 3AXY C; 3NKX A; 4HKC A; 2O02 A; 3SMM A; 5LU1 A; 4DHS A; 2BTP A; 3M51 A; 2C74 A; 3UAL A; 4ZQ0 A; 5D2D A; 3SP5 A; 3IQJ A; 3P1S A; 3P1R A; 5D3F A; 3UX0 A; 4BG6 A; 4JC3 A; 1YZ5 A; 3IQV A; 3UZD A; 5IQP A; 4DX0 A; 4QLI A; 3RDH A; 3M50 A; 5EXA A; 5BTV A; 4DHT A; 5LHO A; 4DHU A; 4IHL A; 4DHN A; 4O46 A; 4DAT A; 2O8P A; 2BQ0 A; 4ZDR A; 3LW1 A; 5J31 A; 5LX2 A; 4WRQ A; 4JDD A; 1A4O A; 3P1N A; 2WH0 A; 3MHR A; 2C23 A; 1YWT A;
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