4O8YB

Zinc-free rpn11 in complex with rpn8
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
197
structure length
166
Chain Sequence
KETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDLNRHYYSLNIDYHKTAKETKMLMNLHKEQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords 26S proteasome regulatory subunit RPN8
publication title Structure of the Rpn11-Rpn8 dimer reveals mechanisms of substrate deubiquitination during proteasomal degradation.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 50
structure length 166
sequence length 197
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2013-12-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01398 JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 4o8yB00
3G8QA 1OX7A 1ZABA 2D5NA 3ZEFB 1R5XA 2O7PA 4EG2A 4ZD5A 1TIYA 1JTKA 2Z3GA 4HRWA 4MSJA 2Z3JA 2B3ZA 2Z3IA 1WKQA 2W4LA 4P9EA 4NQLA 1ALNA 4E0QA 2O3KA 4MS7A 4OCMA 2G6VA 4OWPB 1Z3AA 4QFTA 4MSDA 4MSMA 3OJ6A 4O8YA 4F3WA 2NYTA 2P8RA 4WIGA 5CW6A 2OBCA 4P9DA 4KITC 4ZD4A 2FR6A 4OCMB 1YSBA 3SBGA 4I43B 3E1UA 2NX8A 2RPZA 4PQTA 2P87A 2O96A 2HXVA 4LD2A 4O8XA 3OCQA 1RB7A 2QLCA 4OCNA 5DCAJ 3MPZA 3ZPGA 4F7OA 4D10F 4BGDC 3RZUA 4JXEA 1CTUA 3DMOA 3R2NA 2G84A 4WIFA 1UWZA 4O8XB 1WN6A 1OI0A 2FR5A 2KCQA 1P6OA 4OCNB 4ZFRA 1UX1A 4P9CA 4ZFTA 1VQ2A 4LCPA 1WN5A 2HVVA 4ILGC 4OCLA 4HRQA 5C2OA 4O8YB 2HVWA 2PW9A 2OG4A 4G3MA 5GAOA 4K1RA 2Z3HA 3EX8A 5M52C 3B8FA 4LD4A 4OCLB 2KKSA 2D30A 1CTTA 5M59B 2ZNRA 3RZVA 3IJFX 1UX0A 1AF2A 3ZPCA 1UAQA 2B3JA 4MSQA 2ZNVA 1YSDA 1R5TA 1MQ0A 2O95A 4LC5A 2A8NA 3DH1A 4LCNA 1WWRA 4LCOA 4OWPA
chains in the Genus database with same CATH superfamily
3G8QA 1OX7A 1ZABA 2D5NA 3ZEFB 1R5XA 1THZA 2O7PA 4EG2A 4ZD5A 1TIYA 1JTKA 2Z3GA 4HRWA 4MSJA 2Z3JA 2B3ZA 2Z3IA 1WKQA 2W4LA 4P9EA 4NQLA 1ALNA 4E0QA 2O3KA 4MS7A 4OCMA 2G6VA 4OWPB 1PKXA 1Z3AA 4QFTA 4MSDA 4MSMA 3OJ6A 4O8YA 4F3WA 2NYTA 2P8RA 4WIGA 5CW6A 4A1OA 2OBCA 4P9DA 2B1GA 2IU3A 4KITC 4ZD4A 2FR6A 4OCMB 1YSBA 3SBGA 4I43B 3E1UA 2NX8A 1ZCZA 2RPZA 4PQTA 2P87A 2O96A 4J6EA 2HXVA 4LD2A 4O8XA 3OCQA 1RB7A 2QLCA 4OCNA 5DCAJ 3MPZA 3ZPGA 3ZZMA 4F7OA 4D10F 4BGDC 3VX8A 3RZUA 4JXEA 1CTUA 3DMOA 1G8MA 2G84A 3R2NA 4WIFA 1UWZA 4O8XB 1WN6A 1OI0A 2FR5A 2KCQA 1P6OA 4OCNB 4ZFRA 1UX1A 4P9CA 4ZFTA 1VQ2A 4LCPA 1WN5A 2HVVA 4ILGC 4OCLA 4HRQA 5C2OA 4O8YB 1M9NA 2HVWA 2PW9A 2OG4A 4G3MA 5GAOA 4K1RA 2Z3HA 3EX8A 5M52C 3B8FA 4LD4A 4OCLB 2KKSA 2D30A 2IU0A 1CTTA 5M59B 2ZNRA 3RZVA 4GGMX 3IJFX 1UX0A 1PL0A 1AF2A 2B1IA 3ZPCA 1VK9A 1OZ0A 1UAQA 2B3JA 4MSQA 2ZNVA 1YSDA 1P4RA 3BH1A 1R5TA 1MQ0A 4EHIA 2O95A 4LC5A 2A8NA 3DH1A 4LCNA 1WWRA 4LCOA 4OWPA
chains in the Genus database with same CATH topology
3G8QA 1OX7A 1ZABA 2D5NA 3ZEFB 1R5XA 2O7PA 4EG2A 4ZD5A 1TIYA 1JTKA 2Z3GA 4HRWA 4MSJA 2Z3JA 2B3ZA 2Z3IA 1WKQA 2W4LA 4P9EA 4NQLA 1ALNA 4E0QA 2O3KA 4MS7A 4OCMA 2G6VA 4OWPB 1Z3AA 4QFTA 4MSDA 4MSMA 3OJ6A 4O8YA 4F3WA 2NYTA 2P8RA 4WIGA 5CW6A 2OBCA 4P9DA 4KITC 4ZD4A 2FR6A 4OCMB 1YSBA 3SBGA 4I43B 3E1UA 2NX8A 2RPZA 4PQTA 2P87A 2O96A 2HXVA 4LD2A 4O8XA 3OCQA 1RB7A 2QLCA 4OCNA 5DCAJ 3MPZA 3ZPGA 4F7OA 4D10F 4BGDC 3RZUA 4JXEA 1CTUA 3DMOA 3R2NA 2G84A 4WIFA 1UWZA 4O8XB 1WN6A 1OI0A 2FR5A 2KCQA 1P6OA 4OCNB 4ZFRA 1UX1A 4P9CA 4ZFTA 1VQ2A 4LCPA 1WN5A 2HVVA 4ILGC 4OCLA 4HRQA 5C2OA 4O8YB 2HVWA 2PW9A 2OG4A 4G3MA 5GAOA 4K1RA 2Z3HA 3EX8A 5M52C 3B8FA 4LD4A 4OCLB 2KKSA 2D30A 1CTTA 5M59B 2ZNRA 3RZVA 3IJFX 1UX0A 1AF2A 3ZPCA 1UAQA 2B3JA 4MSQA 2ZNVA 1YSDA 1R5TA 1MQ0A 2O95A 4LC5A 2A8NA 3DH1A 4LCNA 1WWRA 4LCOA 4OWPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3G8Q A;  1OX7 A;  1ZAB A;  2D5N A;  3ZEF B;  1R5X A;  2O7P A;  4EG2 A;  4ZD5 A;  1TIY A;  1JTK A;  2Z3G A;  4HRW A;  4MSJ A;  2Z3J A;  2B3Z A;  2Z3I A;  1WKQ A;  2W4L A;  4P9E A;  4NQL A;  1ALN A;  4E0Q A;  2O3K A;  4MS7 A;  4OCM A;  2G6V A;  4OWP B;  1Z3A A;  4QFT A;  4MSD A;  4MSM A;  3OJ6 A;  4O8Y A;  4F3W A;  2NYT A;  2P8R A;  4WIG A;  5CW6 A;  2OBC A;  4P9D A;  4KIT C;  4ZD4 A;  2FR6 A;  4OCM B;  1YSB A;  3SBG A;  4I43 B;  3E1U A;  2NX8 A;  2RPZ A;  4PQT A;  2P87 A;  2O96 A;  2HXV A;  4LD2 A;  4O8X A;  3OCQ A;  1RB7 A;  2QLC A;  4OCN A;  5DCA J;  3MPZ A;  3ZPG A;  4F7O A;  4D10 F;  4BGD C;  3RZU A;  4JXE A;  1CTU A;  3DMO A;  3R2N A;  2G84 A;  4WIF A;  1UWZ A;  4O8X B;  1WN6 A;  1OI0 A;  2FR5 A;  2KCQ A;  1P6O A;  4OCN B;  4ZFR A;  1UX1 A;  4P9C A;  4ZFT A;  1VQ2 A;  4LCP A;  1WN5 A;  2HVV A;  4ILG C;  4OCL A;  4HRQ A;  5C2O A;  4O8Y B;  2HVW A;  2PW9 A;  2OG4 A;  4G3M A;  5GAO A;  4K1R A;  2Z3H A;  3EX8 A;  5M52 C;  3B8F A;  4LD4 A;  4OCL B;  2KKS A;  2D30 A;  1CTT A;  5M59 B;  2ZNR A;  3RZV A;  3IJF X;  1UX0 A;  1AF2 A;  3ZPC A;  1UAQ A;  2B3J A;  4MSQ A;  2ZNV A;  1YSD A;  1R5T A;  1MQ0 A;  2O95 A;  4LC5 A;  2A8N A;  3DH1 A;  4LCN A;  1WWR A;  4LCO A;  4OWP A; 
#chains in the Genus database with same CATH topology
 3G8Q A;  1OX7 A;  1ZAB A;  2D5N A;  3ZEF B;  1R5X A;  1THZ A;  2O7P A;  4EG2 A;  4ZD5 A;  1TIY A;  1JTK A;  2Z3G A;  4HRW A;  4MSJ A;  2Z3J A;  2B3Z A;  2Z3I A;  1WKQ A;  2W4L A;  4P9E A;  4NQL A;  1ALN A;  4E0Q A;  2O3K A;  4MS7 A;  4OCM A;  2G6V A;  4OWP B;  1PKX A;  1Z3A A;  4QFT A;  4MSD A;  4MSM A;  3OJ6 A;  4O8Y A;  4F3W A;  2NYT A;  2P8R A;  4WIG A;  5CW6 A;  4A1O A;  2OBC A;  4P9D A;  2B1G A;  2IU3 A;  4KIT C;  4ZD4 A;  2FR6 A;  4OCM B;  1YSB A;  3SBG A;  4I43 B;  3E1U A;  2NX8 A;  1ZCZ A;  2RPZ A;  4PQT A;  2P87 A;  2O96 A;  4J6E A;  2HXV A;  4LD2 A;  4O8X A;  3OCQ A;  1RB7 A;  2QLC A;  4OCN A;  5DCA J;  3MPZ A;  3ZPG A;  3ZZM A;  4F7O A;  4D10 F;  4BGD C;  3VX8 A;  3RZU A;  4JXE A;  1CTU A;  3DMO A;  1G8M A;  2G84 A;  3R2N A;  4WIF A;  1UWZ A;  4O8X B;  1WN6 A;  1OI0 A;  2FR5 A;  2KCQ A;  1P6O A;  4OCN B;  4ZFR A;  1UX1 A;  4P9C A;  4ZFT A;  1VQ2 A;  4LCP A;  1WN5 A;  2HVV A;  4ILG C;  4OCL A;  4HRQ A;  5C2O A;  4O8Y B;  1M9N A;  2HVW A;  2PW9 A;  2OG4 A;  4G3M A;  5GAO A;  4K1R A;  2Z3H A;  3EX8 A;  5M52 C;  3B8F A;  4LD4 A;  4OCL B;  2KKS A;  2D30 A;  2IU0 A;  1CTT A;  5M59 B;  2ZNR A;  3RZV A;  4GGM X;  3IJF X;  1UX0 A;  1PL0 A;  1AF2 A;  2B1I A;  3ZPC A;  1VK9 A;  1OZ0 A;  1UAQ A;  2B3J A;  4MSQ A;  2ZNV A;  1YSD A;  1P4R A;  3BH1 A;  1R5T A;  1MQ0 A;  4EHI A;  2O95 A;  4LC5 A;  2A8N A;  3DH1 A;  4LCN A;  1WWR A;  4LCO A;  4OWP A; 
#chains in the Genus database with same CATH homology
 3G8Q A;  1OX7 A;  1ZAB A;  2D5N A;  3ZEF B;  1R5X A;  2O7P A;  4EG2 A;  4ZD5 A;  1TIY A;  1JTK A;  2Z3G A;  4HRW A;  4MSJ A;  2Z3J A;  2B3Z A;  2Z3I A;  1WKQ A;  2W4L A;  4P9E A;  4NQL A;  1ALN A;  4E0Q A;  2O3K A;  4MS7 A;  4OCM A;  2G6V A;  4OWP B;  1Z3A A;  4QFT A;  4MSD A;  4MSM A;  3OJ6 A;  4O8Y A;  4F3W A;  2NYT A;  2P8R A;  4WIG A;  5CW6 A;  2OBC A;  4P9D A;  4KIT C;  4ZD4 A;  2FR6 A;  4OCM B;  1YSB A;  3SBG A;  4I43 B;  3E1U A;  2NX8 A;  2RPZ A;  4PQT A;  2P87 A;  2O96 A;  2HXV A;  4LD2 A;  4O8X A;  3OCQ A;  1RB7 A;  2QLC A;  4OCN A;  5DCA J;  3MPZ A;  3ZPG A;  4F7O A;  4D10 F;  4BGD C;  3RZU A;  4JXE A;  1CTU A;  3DMO A;  3R2N A;  2G84 A;  4WIF A;  1UWZ A;  4O8X B;  1WN6 A;  1OI0 A;  2FR5 A;  2KCQ A;  1P6O A;  4OCN B;  4ZFR A;  1UX1 A;  4P9C A;  4ZFT A;  1VQ2 A;  4LCP A;  1WN5 A;  2HVV A;  4ILG C;  4OCL A;  4HRQ A;  5C2O A;  4O8Y B;  2HVW A;  2PW9 A;  2OG4 A;  4G3M A;  5GAO A;  4K1R A;  2Z3H A;  3EX8 A;  5M52 C;  3B8F A;  4LD4 A;  4OCL B;  2KKS A;  2D30 A;  1CTT A;  5M59 B;  2ZNR A;  3RZV A;  3IJF X;  1UX0 A;  1AF2 A;  3ZPC A;  1UAQ A;  2B3J A;  4MSQ A;  2ZNV A;  1YSD A;  1R5T A;  1MQ0 A;  2O95 A;  4LC5 A;  2A8N A;  3DH1 A;  4LCN A;  1WWR A;  4LCO A;  4OWP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...