4O9KA

Crystal structure of the cbs pair of a putative d-arabinose 5-phosphate isomerase from methylococcus capsulatus in complex with cmp-kdo
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
130
structure length
130
Chain Sequence
GRRLLTFVRDIMHTGDDTPVIGLEASVRDALLEMTAKKLGMTAIVDGAGTIQGVFTDGDLRRLLEKAQDIHATPITAVMTRSCVTVEGSLLAAEAVRIMEQKRINALPVVENGRLIGAINMHDLLRAGVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure and kinetic properties of D-arabinose 5-phosphate isomerase from Methylococcus capsulatus
rcsb
molecule keywords Arabinose 5-phosphate isomerase
molecule tags Isomerase
source organism Methylococcus capsulatus
total genus 30
structure length 130
sequence length 130
chains with identical sequence B
ec nomenclature ec 5.3.1.13: Arabinose-5-phosphate isomerase.
pdb deposition date 2014-01-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 4o9kA00
3TDHC 2NYEA 2OUXA 4IY2A 2QR1E 2YVXA 2YZQA 2OOXE 4PCUA 4DQWA 4IYSA 3TE5C 2ZY9A 5K22B 3KPDA 4GQYA 2P9MA 2YZIA 2QLVC 3DDJA 2YVZA 1Y5HA 3GBYA 3SL7A 4L27A 2UV7A 4P1GA 5LXQA 1XKFA 3KH5A 2RIFA 3OCMA 5IIPA 2EMQA 3PC2A 5K24C 5MMZA 3FHMA 2QREE 3KPBA 3KXRA 2D4ZA 3OCOA 3OI8A 3K2VA 1PVMA 3LQNA 2EF7A 4P1OA 3FWRA 3PC4A 3L2BA 4UUUA 2QH1A 2OOYE 2RC3A 3T4NC 4L0DA 3PC3A 3LV9A 4ESYB 4COOA 2QRDE 4IY4A 4L3VA 3KPCA 4FRYA 3LHHA 4GQVA 5K25C 2UV4A 4L28A 3I8NA 4GQWA 3LFZA 4FXSA 2UV5A 2O16A 3FV6A 2YVYA 3FWSA 4NOCA 4HG0A 2NYCA 3K6EA 4IY0A 1PBJA 1YAVA 3L31A 2UV6A 4ESYA 2PFIA 2QRCE 1O50A 3HF7A 3FNAA 3ORGA 2RIHA 4O9KA 5KS7A 4IY3A 5K23C
chains in the Genus database with same CATH superfamily
3TDHC 2NYEA 2OUXA 4IY2A 2J9LA 2QR1E 2YVXA 2YZQA 2OOXE 4PCUA 4DQWA 4IYSA 3TE5C 2ZY9A 5K22B 3KPDA 4GQYA 2P9MA 2YZIA 2QLVC 3DDJA 2YVZA 1Y5HA 3GBYA 3SL7A 4L27A 2UV7A 4P1GA 5LXQA 1XKFA 3KH5A 2RIFA 3OCMA 5IIPA 2EMQA 3PC2A 5K24C 5MMZA 3FHMA 2QREE 3KPBA 3KXRA 2D4ZA 3OCOA 3OI8A 3K2VA 1PVMA 3LQNA 2EF7A 4P1OA 3FWRA 3PC4A 3L2BA 4UUUA 2QH1A 2OOYE 2RC3A 3T4NC 4L0DA 3PC3A 3LV9A 4ESYB 4COOA 2QRDE 4IY4A 4L3VA 3KPCA 4FRYA 3LHHA 4GQVA 5K25C 2UV4A 4L28A 3I8NA 4GQWA 3LFZA 4FXSA 2UV5A 2O16A 3FV6A 2YVYA 3FWSA 4NOCA 4HG0A 2NYCA 3K6EA 4IY0A 1PBJA 1YAVA 3L31A 2UV6A 4ESYA 2PFIA 2JA3A 2QRCE 1O50A 3HF7A 3FNAA 3ORGA 2RIHA 4O9KA 5KS7A 4IY3A 5K23C
chains in the Genus database with same CATH topology
3TDHC 2NYEA 2OUXA 4IY2A 2J9LA 2QR1E 2YVXA 2YZQA 2OOXE 4PCUA 4DQWA 4IYSA 3TE5C 2ZY9A 5K22B 3KPDA 4GQYA 2P9MA 2YZIA 2QLVC 3DDJA 2YVZA 1Y5HA 3GBYA 3SL7A 4L27A 2UV7A 4P1GA 5LXQA 1XKFA 3KH5A 2RIFA 3OCMA 5IIPA 2EMQA 3PC2A 5K24C 5MMZA 3FHMA 2QREE 3KPBA 3KXRA 2D4ZA 3OCOA 3OI8A 3K2VA 1PVMA 3LQNA 2EF7A 4P1OA 3FWRA 3PC4A 3L2BA 4UUUA 2QH1A 2OOYE 2RC3A 3T4NC 4L0DA 3PC3A 3LV9A 4ESYB 4COOA 2QRDE 4IY4A 4L3VA 3KPCA 4FRYA 3LHHA 4GQVA 5K25C 2UV4A 4L28A 3I8NA 4GQWA 3LFZA 4FXSA 2UV5A 2O16A 3FV6A 2YVYA 3FWSA 4NOCA 4HG0A 2NYCA 3K6EA 4IY0A 1PBJA 1YAVA 3L31A 2UV6A 4ESYA 2PFIA 2JA3A 2QRCE 1O50A 3HF7A 3FNAA 3ORGA 2RIHA 4O9KA 5KS7A 4IY3A 5K23C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TDH C;  2NYE A;  2OUX A;  4IY2 A;  2QR1 E;  2YVX A;  2YZQ A;  2OOX E;  4PCU A;  4DQW A;  4IYS A;  3TE5 C;  2ZY9 A;  5K22 B;  3KPD A;  4GQY A;  2P9M A;  2YZI A;  2QLV C;  3DDJ A;  2YVZ A;  1Y5H A;  3GBY A;  3SL7 A;  4L27 A;  2UV7 A;  4P1G A;  5LXQ A;  1XKF A;  3KH5 A;  2RIF A;  3OCM A;  5IIP A;  2EMQ A;  3PC2 A;  5K24 C;  5MMZ A;  3FHM A;  2QRE E;  3KPB A;  3KXR A;  2D4Z A;  3OCO A;  3OI8 A;  3K2V A;  1PVM A;  3LQN A;  2EF7 A;  4P1O A;  3FWR A;  3PC4 A;  3L2B A;  4UUU A;  2QH1 A;  2OOY E;  2RC3 A;  3T4N C;  4L0D A;  3PC3 A;  3LV9 A;  4ESY B;  4COO A;  2QRD E;  4IY4 A;  4L3V A;  3KPC A;  4FRY A;  3LHH A;  4GQV A;  5K25 C;  2UV4 A;  4L28 A;  3I8N A;  4GQW A;  3LFZ A;  4FXS A;  2UV5 A;  2O16 A;  3FV6 A;  2YVY A;  3FWS A;  4NOC A;  4HG0 A;  2NYC A;  3K6E A;  4IY0 A;  1PBJ A;  1YAV A;  3L31 A;  2UV6 A;  4ESY A;  2PFI A;  2QRC E;  1O50 A;  3HF7 A;  3FNA A;  3ORG A;  2RIH A;  4O9K A;  5KS7 A;  4IY3 A;  5K23 C; 
#chains in the Genus database with same CATH topology
 3TDH C;  2NYE A;  2OUX A;  4IY2 A;  2J9L A;  2QR1 E;  2YVX A;  2YZQ A;  2OOX E;  4PCU A;  4DQW A;  4IYS A;  3TE5 C;  2ZY9 A;  5K22 B;  3KPD A;  4GQY A;  2P9M A;  2YZI A;  2QLV C;  3DDJ A;  2YVZ A;  1Y5H A;  3GBY A;  3SL7 A;  4L27 A;  2UV7 A;  4P1G A;  5LXQ A;  1XKF A;  3KH5 A;  2RIF A;  3OCM A;  5IIP A;  2EMQ A;  3PC2 A;  5K24 C;  5MMZ A;  3FHM A;  2QRE E;  3KPB A;  3KXR A;  2D4Z A;  3OCO A;  3OI8 A;  3K2V A;  1PVM A;  3LQN A;  2EF7 A;  4P1O A;  3FWR A;  3PC4 A;  3L2B A;  4UUU A;  2QH1 A;  2OOY E;  2RC3 A;  3T4N C;  4L0D A;  3PC3 A;  3LV9 A;  4ESY B;  4COO A;  2QRD E;  4IY4 A;  4L3V A;  3KPC A;  4FRY A;  3LHH A;  4GQV A;  5K25 C;  2UV4 A;  4L28 A;  3I8N A;  4GQW A;  3LFZ A;  4FXS A;  2UV5 A;  2O16 A;  3FV6 A;  2YVY A;  3FWS A;  4NOC A;  4HG0 A;  2NYC A;  3K6E A;  4IY0 A;  1PBJ A;  1YAV A;  3L31 A;  2UV6 A;  4ESY A;  2PFI A;  2JA3 A;  2QRC E;  1O50 A;  3HF7 A;  3FNA A;  3ORG A;  2RIH A;  4O9K A;  5KS7 A;  4IY3 A;  5K23 C; 
#chains in the Genus database with same CATH homology
 3TDH C;  2NYE A;  2OUX A;  4IY2 A;  2J9L A;  2QR1 E;  2YVX A;  2YZQ A;  2OOX E;  4PCU A;  4DQW A;  4IYS A;  3TE5 C;  2ZY9 A;  5K22 B;  3KPD A;  4GQY A;  2P9M A;  2YZI A;  2QLV C;  3DDJ A;  2YVZ A;  1Y5H A;  3GBY A;  3SL7 A;  4L27 A;  2UV7 A;  4P1G A;  5LXQ A;  1XKF A;  3KH5 A;  2RIF A;  3OCM A;  5IIP A;  2EMQ A;  3PC2 A;  5K24 C;  5MMZ A;  3FHM A;  2QRE E;  3KPB A;  3KXR A;  2D4Z A;  3OCO A;  3OI8 A;  3K2V A;  1PVM A;  3LQN A;  2EF7 A;  4P1O A;  3FWR A;  3PC4 A;  3L2B A;  4UUU A;  2QH1 A;  2OOY E;  2RC3 A;  3T4N C;  4L0D A;  3PC3 A;  3LV9 A;  4ESY B;  4COO A;  2QRD E;  4IY4 A;  4L3V A;  3KPC A;  4FRY A;  3LHH A;  4GQV A;  5K25 C;  2UV4 A;  4L28 A;  3I8N A;  4GQW A;  3LFZ A;  4FXS A;  2UV5 A;  2O16 A;  3FV6 A;  2YVY A;  3FWS A;  4NOC A;  4HG0 A;  2NYC A;  3K6E A;  4IY0 A;  1PBJ A;  1YAV A;  3L31 A;  2UV6 A;  4ESY A;  2PFI A;  2JA3 A;  2QRC E;  1O50 A;  3HF7 A;  3FNA A;  3ORG A;  2RIH A;  4O9K A;  5KS7 A;  4IY3 A;  5K23 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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