4O9KA

Crystal structure of the cbs pair of a putative d-arabinose 5-phosphate isomerase from methylococcus capsulatus in complex with cmp-kdo
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
130
structure length
130
Chain Sequence
GRRLLTFVRDIMHTGDDTPVIGLEASVRDALLEMTAKKLGMTAIVDGAGTIQGVFTDGDLRRLLEKAQDIHATPITAVMTRSCVTVEGSLLAAEAVRIMEQKRINALPVVENGRLIGAINMHDLLRAGVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords Arabinose 5-phosphate isomerase
publication title Crystal structure and kinetic properties of D-arabinose 5-phosphate isomerase from Methylococcus capsulatus
rcsb
source organism Methylococcus capsulatus
total genus 30
structure length 130
sequence length 130
chains with identical sequence B
ec nomenclature ec 5.3.1.13: Arabinose-5-phosphate isomerase.
pdb deposition date 2014-01-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 4o9kA00
3KPDA 3FHMA 2UV7A 5K22B 2UV4A 4IYSA 5K24C 5IIPA 5LXQA 2QH1A 4GQYA 3GBYA 2YZIA 3I8NA 4P1GA 5K25C 3KPBA 2QR1E 4O9KA 2PFIA 4L0DA 3K2VA 3L2BA 3PC2A 2QLVC 2OOYE 2NYEA 4FXSA 3L31A 3TE5C 3KPCA 3KXRA 3KH5A 2RC3A 3K6EA 3LFZA 3LHHA 3FWSA 4GQWA 3TDHC 3LV9A 2YVYA 2YVXA 4ESYA 3PC3A 5MMZA 2ZY9A 4ESYB 5K23C 2O16A 2RIHA 2UV5A 3FNAA 3ORGA 4L28A 2D4ZA 3OCMA 3LQNA 4L3VA 2EF7A 1O50A 2OOXE 1Y5HA 3FV6A 2P9MA 2UV6A 2QRDE 3HF7A 3PC4A 4PCUA 4HG0A 1PBJA 4DQWA 3FWRA 4IY3A 4NOCA 1XKFA 4IY0A 1YAVA 2QRCE 2NYCA 2YZQA 5KS7A 2EMQA 3DDJA 3OI8A 4IY4A 4COOA 2OUXA 4FRYA 1PVMA 4UUUA 4L27A 4P1OA 3OCOA 3SL7A 3T4NC 4GQVA 4IY2A 2YVZA 2QREE 2RIFA
chains in the Genus database with same CATH superfamily
3KPDA 3FHMA 2UV7A 5K22B 2UV4A 4IYSA 5K24C 5IIPA 5LXQA 2QH1A 4GQYA 3GBYA 2YZIA 3I8NA 4P1GA 5K25C 3KPBA 2QR1E 4O9KA 2PFIA 4L0DA 3K2VA 3L2BA 3PC2A 2QLVC 2J9LA 2JA3A 2OOYE 2NYEA 4FXSA 3L31A 3TE5C 3KPCA 3KXRA 3KH5A 2RC3A 3K6EA 3LFZA 3LHHA 3FWSA 4GQWA 3TDHC 3LV9A 2YVYA 2YVXA 4ESYA 3PC3A 5MMZA 2ZY9A 4ESYB 5K23C 2O16A 2RIHA 2UV5A 3FNAA 3ORGA 4L28A 2D4ZA 3OCMA 3LQNA 4L3VA 2EF7A 1O50A 2OOXE 1Y5HA 3FV6A 2P9MA 2UV6A 2QRDE 3HF7A 3PC4A 4PCUA 4HG0A 1PBJA 4DQWA 3FWRA 4IY3A 4NOCA 1XKFA 4IY0A 1YAVA 2QRCE 2NYCA 2YZQA 5KS7A 2EMQA 3DDJA 3OI8A 4IY4A 4COOA 2OUXA 4FRYA 1PVMA 4UUUA 4L27A 4P1OA 3OCOA 3SL7A 3T4NC 4GQVA 4IY2A 2YVZA 2QREE 2RIFA
chains in the Genus database with same CATH topology
3KPDA 3FHMA 2UV7A 5K22B 2UV4A 4IYSA 5K24C 5IIPA 5LXQA 2QH1A 4GQYA 3GBYA 2YZIA 3I8NA 4P1GA 5K25C 3KPBA 2QR1E 4O9KA 2PFIA 4L0DA 3K2VA 3L2BA 3PC2A 2QLVC 2J9LA 2JA3A 2OOYE 2NYEA 4FXSA 3L31A 3TE5C 3KPCA 3KXRA 3KH5A 2RC3A 3K6EA 3LFZA 3LHHA 3FWSA 4GQWA 3TDHC 3LV9A 2YVYA 2YVXA 4ESYA 3PC3A 5MMZA 2ZY9A 4ESYB 5K23C 2O16A 2RIHA 2UV5A 3FNAA 3ORGA 4L28A 2D4ZA 3OCMA 3LQNA 4L3VA 2EF7A 1O50A 2OOXE 1Y5HA 3FV6A 2P9MA 2UV6A 2QRDE 3HF7A 3PC4A 4PCUA 4HG0A 1PBJA 4DQWA 3FWRA 4IY3A 4NOCA 1XKFA 4IY0A 1YAVA 2QRCE 2NYCA 2YZQA 5KS7A 2EMQA 3DDJA 3OI8A 4IY4A 4COOA 2OUXA 4FRYA 1PVMA 4UUUA 4L27A 4P1OA 3OCOA 3SL7A 3T4NC 4GQVA 4IY2A 2YVZA 2QREE 2RIFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KPD A;  3FHM A;  2UV7 A;  5K22 B;  2UV4 A;  4IYS A;  5K24 C;  5IIP A;  5LXQ A;  2QH1 A;  4GQY A;  3GBY A;  2YZI A;  3I8N A;  4P1G A;  5K25 C;  3KPB A;  2QR1 E;  4O9K A;  2PFI A;  4L0D A;  3K2V A;  3L2B A;  3PC2 A;  2QLV C;  2OOY E;  2NYE A;  4FXS A;  3L31 A;  3TE5 C;  3KPC A;  3KXR A;  3KH5 A;  2RC3 A;  3K6E A;  3LFZ A;  3LHH A;  3FWS A;  4GQW A;  3TDH C;  3LV9 A;  2YVY A;  2YVX A;  4ESY A;  3PC3 A;  5MMZ A;  2ZY9 A;  4ESY B;  5K23 C;  2O16 A;  2RIH A;  2UV5 A;  3FNA A;  3ORG A;  4L28 A;  2D4Z A;  3OCM A;  3LQN A;  4L3V A;  2EF7 A;  1O50 A;  2OOX E;  1Y5H A;  3FV6 A;  2P9M A;  2UV6 A;  2QRD E;  3HF7 A;  3PC4 A;  4PCU A;  4HG0 A;  1PBJ A;  4DQW A;  3FWR A;  4IY3 A;  4NOC A;  1XKF A;  4IY0 A;  1YAV A;  2QRC E;  2NYC A;  2YZQ A;  5KS7 A;  2EMQ A;  3DDJ A;  3OI8 A;  4IY4 A;  4COO A;  2OUX A;  4FRY A;  1PVM A;  4UUU A;  4L27 A;  4P1O A;  3OCO A;  3SL7 A;  3T4N C;  4GQV A;  4IY2 A;  2YVZ A;  2QRE E;  2RIF A; 
#chains in the Genus database with same CATH topology
 3KPD A;  3FHM A;  2UV7 A;  5K22 B;  2UV4 A;  4IYS A;  5K24 C;  5IIP A;  5LXQ A;  2QH1 A;  4GQY A;  3GBY A;  2YZI A;  3I8N A;  4P1G A;  5K25 C;  3KPB A;  2QR1 E;  4O9K A;  2PFI A;  4L0D A;  3K2V A;  3L2B A;  3PC2 A;  2QLV C;  2J9L A;  2JA3 A;  2OOY E;  2NYE A;  4FXS A;  3L31 A;  3TE5 C;  3KPC A;  3KXR A;  3KH5 A;  2RC3 A;  3K6E A;  3LFZ A;  3LHH A;  3FWS A;  4GQW A;  3TDH C;  3LV9 A;  2YVY A;  2YVX A;  4ESY A;  3PC3 A;  5MMZ A;  2ZY9 A;  4ESY B;  5K23 C;  2O16 A;  2RIH A;  2UV5 A;  3FNA A;  3ORG A;  4L28 A;  2D4Z A;  3OCM A;  3LQN A;  4L3V A;  2EF7 A;  1O50 A;  2OOX E;  1Y5H A;  3FV6 A;  2P9M A;  2UV6 A;  2QRD E;  3HF7 A;  3PC4 A;  4PCU A;  4HG0 A;  1PBJ A;  4DQW A;  3FWR A;  4IY3 A;  4NOC A;  1XKF A;  4IY0 A;  1YAV A;  2QRC E;  2NYC A;  2YZQ A;  5KS7 A;  2EMQ A;  3DDJ A;  3OI8 A;  4IY4 A;  4COO A;  2OUX A;  4FRY A;  1PVM A;  4UUU A;  4L27 A;  4P1O A;  3OCO A;  3SL7 A;  3T4N C;  4GQV A;  4IY2 A;  2YVZ A;  2QRE E;  2RIF A; 
#chains in the Genus database with same CATH homology
 3KPD A;  3FHM A;  2UV7 A;  5K22 B;  2UV4 A;  4IYS A;  5K24 C;  5IIP A;  5LXQ A;  2QH1 A;  4GQY A;  3GBY A;  2YZI A;  3I8N A;  4P1G A;  5K25 C;  3KPB A;  2QR1 E;  4O9K A;  2PFI A;  4L0D A;  3K2V A;  3L2B A;  3PC2 A;  2QLV C;  2J9L A;  2JA3 A;  2OOY E;  2NYE A;  4FXS A;  3L31 A;  3TE5 C;  3KPC A;  3KXR A;  3KH5 A;  2RC3 A;  3K6E A;  3LFZ A;  3LHH A;  3FWS A;  4GQW A;  3TDH C;  3LV9 A;  2YVY A;  2YVX A;  4ESY A;  3PC3 A;  5MMZ A;  2ZY9 A;  4ESY B;  5K23 C;  2O16 A;  2RIH A;  2UV5 A;  3FNA A;  3ORG A;  4L28 A;  2D4Z A;  3OCM A;  3LQN A;  4L3V A;  2EF7 A;  1O50 A;  2OOX E;  1Y5H A;  3FV6 A;  2P9M A;  2UV6 A;  2QRD E;  3HF7 A;  3PC4 A;  4PCU A;  4HG0 A;  1PBJ A;  4DQW A;  3FWR A;  4IY3 A;  4NOC A;  1XKF A;  4IY0 A;  1YAV A;  2QRC E;  2NYC A;  2YZQ A;  5KS7 A;  2EMQ A;  3DDJ A;  3OI8 A;  4IY4 A;  4COO A;  2OUX A;  4FRY A;  1PVM A;  4UUU A;  4L27 A;  4P1O A;  3OCO A;  3SL7 A;  3T4N C;  4GQV A;  4IY2 A;  2YVZ A;  2QRE E;  2RIF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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