4OAAA

Crystal structure of e. coli lactose permease g46w,g262w bound to sugar
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
407
structure length
391
Chain Sequence
LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTWIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFWYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Lactose/galactose transporter
publication title Structure of sugar-bound LacY.
pubmed doi rcsb
source organism Escherichia coli
total genus 121
structure length 391
sequence length 407
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4oaaA02
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4oaaA01
4LEPA 5A2OA 4W6VA 4IKVA 4Q65A 4D2CA 4IKYA 2V8NA 4U4TA 4TPHA 4QIQA 4APSA 1PV7A 1PV6A 5D6KA 4D2BA 2XUTA 4JR9A 4TPGA 5EQHA 4U4VA 4LDSA 4D2DA 4XNIA 5D59A 4ZWBA 4GC0A 4J05A 4JA3A 4YBQA 3O7QA 4GBYA 4XNJA 4JREA 2CFQA 4IKWA 4OAAA 4IU9A 5A2NA 2CFPA 4IU8A 4ZYRA 4U4WA 4IKXA 1PW4A 4ZW9A 4PYPA 4GBZA 4OH3A 4ZWCA 4IKZA 2Y5YA 5EQGA 4UVMA 5EQIA 3WDOA 3O7PA 4YB9D 5C65A 4TPJA 5D58A 5GXBA
chains in the Genus database with same CATH superfamily
3I4ND 3I4MD 1CD9A 4DKDA 4U4VA 2B90A 5D59A 4ZWBA 4J05A 1AU1A 4XNJA 3BPOA 3UX9A 3DI2A 4YPGC 3G6DA 1KF9A 3AYHA 5EQIA 1RFBA 4A3FD 1GA3A 5D28B 2GMFA 1HGUA 1EMRA 3EJJA 3H0GD 3QAZA 4BY1D 1D9GA 5TS9A 4DKFA 4YQXA 3INKC 3QB1A 1ALUA 2OQPA 4IKZA 3LB6B 2Q98A 4NN5A 5D72A 3HOYD 1HWHA 4GRWA 4D2BA 2ERJD 4LRLA 1HIKA 3TGXB 4IU9A 4J4LC 2B5IA 3HOWD 1Y14A 3PO3D 4A3DD 4O9HA 1BGCA 1LKIA 2Q14A 1VLKA 1IL6A 2LAGA 3FKID 2L3OA 3NCBA 4MHLA 1Y6ML 1M4RA 5D6KA 3OQ3A 3HHRA 4GC0A 4GS7A 4A3CD 1JLIA 5IP9D 3B5KA 1SCFA 1V7NV 4GBZA 1BCNA 3H3VE 4BBRD 2Y5YA 4O6KA 1HULA 3WDOA 2L3YA 1I1RB 3Q1SI 1BP3A 3D87A 1ITLA 1M47A 1CSGA 5IYDD 5C3ED 5D70A 1BGDA 1NBPA 4JREA 3DI3A 2JA6D 3QWRB 4ZWCA 1BGEA 5EQGA 1J7VL 3DLQI 1HWGA 3UEZE 4NN6A 1M4AA 1Y1VD 1Y6KL 3SE3B 3NCCA 1ITMA 3HOVD 4DKCA 1A7MA 1M49A 1HZIA 3IRHA 1PW4A 1EVSA 1INRA 1IARA 3DUHC 1HUWA 1BUYA 5A2OA 5IYBD 2B8XA 4IKYA 1ILKA 1Z7CA 2D9QA 1FYHA 1HIJA 4A3BD 4D2DA 4A93D 5D22A 4RS1A 5IYCD 4IKWA 4IU8A 1Y1WD 2B91A 4BBSD 1PY2A 1F45B 3BPLA 1RHGA 1IJZA 1RCBA 1EXZA 2HYMB 4FA8E 2JA8D 3D85C 5L6YC 3D48P 1ETEA 1A22A 3BPNA 4IKXA 4U4WA 3LB6A 1P9MB 1FG9A 3O7PA 4EXNA 2IL6A 4TPJA 1YKBA 4BXXD 5EQHA 3G9VB 4XNIA 2JA7D 4YBQA 3HOZD 3HHCA 4A3ED 5E4EA 5D71A 4A3JD 1GNCA 1M48A 2XQBA 5KNHI 4IKVA 4D2CA 4DKEA 4NI7A 3NPZA 5C44D 4TPGA 3L5XA 1ITFA 1PVHB 3VA2A 1Y6NL 1M4BA 4OAAA 5A2NA 3QT2C 2CFPA 3HOUD 3UF2A 4PYPA 3OG4A 1EERA 1PGRA 1WCMD 4Z5RD 4X51A 1N1FA 2R92D 3S9DA 2B8ZA 2LMSA 2ILKA 4NEMA 4QIQA 1PV6A 1CYLA 2H24A 1LK3A 4LDSA 4JA3A 2Q7NB 3QB7A 2B8UA 4A3MD 4A3KD 2R93D 4EXPA 4ZS7A 5D58A 2R7ZD 1M4CA 4YDYI 2E9WC 4DOHA 1ITIA 5FUCA 2B63D 5IP7D 1AXIA 3OG6A 3O7QA 1EKUA 2Z3RA 4GBYA 2VUMD 2D48A 4BY7D 3MZGA 4NEJA 3N06A 3BESL 4NI9A 2B8YA 5GXBA 4CNIC 4A3ID 3PIWA 2V8NA 4U4TA 3NCEA 4APSA 2CYKA 1F6FA 3HMXB 1CN4C 5LQBA 4I77Z 3PIVA 3UF5A 1IK0A 5C7XA 2O27A 3N0PA 3DGCL 1PV7A 4ZF7A 2XUTA 1AX8A 2O26A 2KZ1A 1WU3I 4ZYRA 4YUEC 2Z3QA 1Z92A 1V7MV 1PW6A 4LEPA 1QVNA 3PO2D 4PS4A 4Q65A 2INTA 4TPHA 1B5LA 4JR9A 1RW5A 3L5WI 3SE4B 1CNT1 2CFQA 3WCYI 4A3GD 3NCFA 4A3LD 4WRLB 4YB9D 3HOXD 3EW3A 4W6VA 1LQSL 2PSMA 1IRLA 1D9CA 4NKQC 2C35A 2JA5D 1BBNA 2O6IA 5FHXA 4ZW9A 4OH3A 5C4XD 4UVMA 4NN7A 5FLMD 5C65A
chains in the Genus database with same CATH topology
4LEPA 5A2OA 4W6VA 4IKVA 4Q65A 4D2CA 4IKYA 2V8NA 4U4TA 4TPHA 4QIQA 4APSA 1PV7A 1PV6A 5D6KA 4D2BA 2XUTA 4JR9A 4TPGA 5EQHA 4U4VA 4LDSA 4D2DA 4XNIA 5D59A 4ZWBA 4GC0A 4J05A 4JA3A 4YBQA 3O7QA 4GBYA 4XNJA 4JREA 2CFQA 4IKWA 4OAAA 4IU9A 5A2NA 2CFPA 4IU8A 4ZYRA 4U4WA 4IKXA 1PW4A 4ZW9A 4PYPA 4GBZA 4OH3A 4ZWCA 4IKZA 2Y5YA 5EQGA 4UVMA 5EQIA 3WDOA 3O7PA 4YB9D 5C65A 4TPJA 5D58A 5GXBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LEP A;  5A2O A;  4W6V A;  4IKV A;  4Q65 A;  4D2C A;  4IKY A;  2V8N A;  4U4T A;  4TPH A;  4QIQ A;  4APS A;  1PV7 A;  1PV6 A;  5D6K A;  4D2B A;  2XUT A;  4JR9 A;  4TPG A;  5EQH A;  4U4V A;  4LDS A;  4D2D A;  4XNI A;  5D59 A;  4ZWB A;  4GC0 A;  4J05 A;  4JA3 A;  4YBQ A;  3O7Q A;  4GBY A;  4XNJ A;  4JRE A;  2CFQ A;  4IKW A;  4OAA A;  4IU9 A;  5A2N A;  2CFP A;  4IU8 A;  4ZYR A;  4U4W A;  4IKX A;  1PW4 A;  4ZW9 A;  4PYP A;  4GBZ A;  4OH3 A;  4ZWC A;  4IKZ A;  2Y5Y A;  5EQG A;  4UVM A;  5EQI A;  3WDO A;  3O7P A;  4YB9 D;  5C65 A;  4TPJ A;  5D58 A;  5GXB A; 
#chains in the Genus database with same CATH topology
 3I4N D;  3I4M D;  1CD9 A;  4DKD A;  4U4V A;  2B90 A;  5D59 A;  4ZWB A;  4J05 A;  1AU1 A;  4XNJ A;  3BPO A;  3UX9 A;  3DI2 A;  4YPG C;  3G6D A;  1KF9 A;  3AYH A;  5EQI A;  1RFB A;  4A3F D;  1GA3 A;  5D28 B;  2GMF A;  1HGU A;  1EMR A;  3EJJ A;  3H0G D;  3QAZ A;  4BY1 D;  1D9G A;  5TS9 A;  4DKF A;  4YQX A;  3INK C;  3QB1 A;  1ALU A;  2OQP A;  4IKZ A;  3LB6 B;  2Q98 A;  4NN5 A;  5D72 A;  3HOY D;  1HWH A;  4GRW A;  4D2B A;  2ERJ D;  4LRL A;  1HIK A;  3TGX B;  4IU9 A;  4J4L C;  2B5I A;  3HOW D;  1Y14 A;  3PO3 D;  4A3D D;  4O9H A;  1BGC A;  1LKI A;  2Q14 A;  1VLK A;  1IL6 A;  2LAG A;  3FKI D;  2L3O A;  3NCB A;  4MHL A;  1Y6M L;  1M4R A;  5D6K A;  3OQ3 A;  3HHR A;  4GC0 A;  4GS7 A;  4A3C D;  1JLI A;  5IP9 D;  3B5K A;  1SCF A;  1V7N V;  4GBZ A;  1BCN A;  3H3V E;  4BBR D;  2Y5Y A;  4O6K A;  1HUL A;  3WDO A;  2L3Y A;  1I1R B;  3Q1S I;  1BP3 A;  3D87 A;  1ITL A;  1M47 A;  1CSG A;  5IYD D;  5C3E D;  5D70 A;  1BGD A;  1NBP A;  4JRE A;  3DI3 A;  2JA6 D;  3QWR B;  4ZWC A;  1BGE A;  5EQG A;  1J7V L;  3DLQ I;  1HWG A;  3UEZ E;  4NN6 A;  1M4A A;  1Y1V D;  1Y6K L;  3SE3 B;  3NCC A;  1ITM A;  3HOV D;  4DKC A;  1A7M A;  1M49 A;  1HZI A;  3IRH A;  1PW4 A;  1EVS A;  1INR A;  1IAR A;  3DUH C;  1HUW A;  1BUY A;  5A2O A;  5IYB D;  2B8X A;  4IKY A;  1ILK A;  1Z7C A;  2D9Q A;  1FYH A;  1HIJ A;  4A3B D;  4D2D A;  4A93 D;  5D22 A;  4RS1 A;  5IYC D;  4IKW A;  4IU8 A;  1Y1W D;  2B91 A;  4BBS D;  1PY2 A;  1F45 B;  3BPL A;  1RHG A;  1IJZ A;  1RCB A;  1EXZ A;  2HYM B;  4FA8 E;  2JA8 D;  3D85 C;  5L6Y C;  3D48 P;  1ETE A;  1A22 A;  3BPN A;  4IKX A;  4U4W A;  3LB6 A;  1P9M B;  1FG9 A;  3O7P A;  4EXN A;  2IL6 A;  4TPJ A;  1YKB A;  4BXX D;  5EQH A;  3G9V B;  4XNI A;  2JA7 D;  4YBQ A;  3HOZ D;  3HHC A;  4A3E D;  5E4E A;  5D71 A;  4A3J D;  1GNC A;  1M48 A;  2XQB A;  5KNH I;  4IKV A;  4D2C A;  4DKE A;  4NI7 A;  3NPZ A;  5C44 D;  4TPG A;  3L5X A;  1ITF A;  1PVH B;  3VA2 A;  1Y6N L;  1M4B A;  4OAA A;  5A2N A;  3QT2 C;  2CFP A;  3HOU D;  3UF2 A;  4PYP A;  3OG4 A;  1EER A;  1PGR A;  1WCM D;  4Z5R D;  4X51 A;  1N1F A;  2R92 D;  3S9D A;  2B8Z A;  2LMS A;  2ILK A;  4NEM A;  4QIQ A;  1PV6 A;  1CYL A;  2H24 A;  1LK3 A;  4LDS A;  4JA3 A;  2Q7N B;  3QB7 A;  2B8U A;  4A3M D;  4A3K D;  2R93 D;  4EXP A;  4ZS7 A;  5D58 A;  2R7Z D;  1M4C A;  4YDY I;  2E9W C;  4DOH A;  1ITI A;  5FUC A;  2B63 D;  5IP7 D;  1AXI A;  3OG6 A;  3O7Q A;  1EKU A;  2Z3R A;  4GBY A;  2VUM D;  2D48 A;  4BY7 D;  3MZG A;  4NEJ A;  3N06 A;  3BES L;  4NI9 A;  2B8Y A;  5GXB A;  4CNI C;  4A3I D;  3PIW A;  2V8N A;  4U4T A;  3NCE A;  4APS A;  2CYK A;  1F6F A;  3HMX B;  1CN4 C;  5LQB A;  4I77 Z;  3PIV A;  3UF5 A;  1IK0 A;  5C7X A;  2O27 A;  3N0P A;  3DGC L;  1PV7 A;  4ZF7 A;  2XUT A;  1AX8 A;  2O26 A;  2KZ1 A;  1WU3 I;  4ZYR A;  4YUE C;  2Z3Q A;  1Z92 A;  1V7M V;  1PW6 A;  4LEP A;  1QVN A;  3PO2 D;  4PS4 A;  4Q65 A;  2INT A;  4TPH A;  1B5L A;  4JR9 A;  1RW5 A;  3L5W I;  3SE4 B;  1CNT 1;  2CFQ A;  3WCY I;  4A3G D;  3NCF A;  4A3L D;  4WRL B;  4YB9 D;  3HOX D;  3EW3 A;  4W6V A;  1LQS L;  2PSM A;  1IRL A;  1D9C A;  4NKQ C;  2C35 A;  2JA5 D;  1BBN A;  2O6I A;  5FHX A;  4ZW9 A;  4OH3 A;  5C4X D;  4UVM A;  4NN7 A;  5FLM D;  5C65 A; 
#chains in the Genus database with same CATH homology
 4LEP A;  5A2O A;  4W6V A;  4IKV A;  4Q65 A;  4D2C A;  4IKY A;  2V8N A;  4U4T A;  4TPH A;  4QIQ A;  4APS A;  1PV7 A;  1PV6 A;  5D6K A;  4D2B A;  2XUT A;  4JR9 A;  4TPG A;  5EQH A;  4U4V A;  4LDS A;  4D2D A;  4XNI A;  5D59 A;  4ZWB A;  4GC0 A;  4J05 A;  4JA3 A;  4YBQ A;  3O7Q A;  4GBY A;  4XNJ A;  4JRE A;  2CFQ A;  4IKW A;  4OAA A;  4IU9 A;  5A2N A;  2CFP A;  4IU8 A;  4ZYR A;  4U4W A;  4IKX A;  1PW4 A;  4ZW9 A;  4PYP A;  4GBZ A;  4OH3 A;  4ZWC A;  4IKZ A;  2Y5Y A;  5EQG A;  4UVM A;  5EQI A;  3WDO A;  3O7P A;  4YB9 D;  5C65 A;  4TPJ A;  5D58 A;  5GXB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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