4OAAA

Crystal structure of e. coli lactose permease g46w,g262w bound to sugar
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
407
structure length
391
Chain Sequence
LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTWIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFWYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Lactose/galactose transporter
publication title Structure of sugar-bound LacY.
pubmed doi rcsb
source organism Escherichia coli
total genus 121
structure length 391
sequence length 407
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4oaaA02
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4oaaA01
4IKVA 4XNIA 2CFQA 2Y5YA 4Q65A 4XNJA 4W6VA 4YBQA 2XUTA 3O7PA 4ZWCA 4D2CA 4TPHA 2V8NA 4UVMA 4YB9D 1PW4A 4IKZA 2CFPA 4IU9A 4IKWA 4JA3A 5D59A 3WDOA 4TPGA 5D58A 5C65A 4PYPA 1PV6A 4IU8A 4U4TA 5EQIA 4IKYA 5EQHA 4APSA 5A2OA 4LEPA 4GBZA 4D2BA 4QIQA 5EQGA 4TPJA 1PV7A 4OH3A 4ZW9A 5GXBA 5A2NA 4U4WA 4J05A 4JREA 4D2DA 4GBYA 4IKXA 4LDSA 4JR9A 4U4VA 4ZYRA 4GC0A 3O7QA 4ZWBA 5D6KA 4OAAA
chains in the Genus database with same CATH superfamily
2O26A 3EJJA 2GMFA 4I77Z 3S9DA 1D9CA 4DKFA 4WRLB 3HOYD 1HUWA 1LK3A 1HGUA 1PV6A 3NCBA 5EQIA 5D72A 2Z3QA 2C35A 5FLMD 2Q98A 3VA2A 1RCBA 1M49A 1IL6A 5C7XA 1AU1A 2PSMA 2XUTA 1LKIA 1V7NV 2B63D 1NBPA 2CYKA 3OQ3A 1M47A 1EMRA 5D58A 1LQSL 4ZS7A 4PYPA 3QT2C 1Y1VD 4A3ID 1PW6A 3UX9A 1BBNA 4A3GD 4A3FD 1YKBA 2O27A 4GC0A 2E9WC 4XNJA 3O7PA 4NI7A 4YB9D 4YPGC 3HOWD 4A3KD 4A3ED 4EXNA 3WDOA 1F45B 3HOUD 1PVHB 4GBZA 5FUCA 3LB6B 4A3MD 4NI9A 1AX8A 1M4BA 2B91A 4OAAA 1BGDA 2B8YA 5E4EA 5L6YC 2CFPA 3UF2A 5D28B 2B8UA 3G6DA 1RFBA 4YUEC 1M4RA 3BPLA 2LMSA 1HWGA 3BESL 1CD9A 3HHCA 3PIWA 1M4CA 5C4XD 1GNCA 1Z92A 3I4MD 1IARA 4BY7D 5D70A 1Y6ML 4GBYA 1HIJA 1Y6KL 4XNIA 1ITMA 4Q65A 4D2CA 1CSGA 4IU9A 1BCNA 3H0GD 1IRLA 3EW3A 3NPZA 4IU8A 5C44D 3FKID 5A2OA 1EERA 3LB6A 5EQGA 4ZW9A 3INKC 2XQBA 3NCFA 4IKXA 3WCYI 4LDSA 4CNIC 4EXPA 1N1FA 3AYHA 4GS7A 1Y1WD 3L5XA 1A7MA 2VUMD 3N06A 1KF9A 1AXIA 1HULA 3BPNA 1Y6NL 2B8ZA 3SE4B 1CN4C 4U4VA 4ZYRA 3QWRB 4DKEA 3B5KA 4YQXA 1GA3A 2JA7D 3SE3B 4YDYI 3OG6A 1D9GA 5D71A 1WU3I 4FA8E 3MZGA 3QB7A 4MHLA 4GRWA 1Z7CA 2ILKA 3NCEA 1J7VL 2IL6A 3DI3A 1FG9A 1F6FA 3TGXB 4DKDA 5IP9D 1CNT1 3NCCA 4A3CD 3UF5A 1WCMD 4TPHA 4BBSD 3DGCL 3PIVA 2JA5D 2R92D 3HMXB 3QB1A 1ALUA 4NN6A 3HHRA 2H24A 4OH3A 5IYBD 4JREA 2JA8D 4LRLA 4JR9A 4ZWBA 1EXZA 1V7MV 4NN7A 2CFQA 2Y5YA 5KNHI 1BGEA 5IP7D 1FYHA 3Q1SI 2Q7NB 1ITIA 4UVMA 1Y14A 4BY1D 4JA3A 1IK0A 4APSA 4QIQA 5GXBA 4U4WA 2Q14A 4D2DA 1INRA 4NN5A 2JA6D 4PS4A 3DLQI 5LQBA 4Z5RD 1IJZA 4W6VA 4BXXD 4IKZA 4X51A 3D48P 3QAZA 5TS9A 1VLKA 2D48A 3N0PA 1SCFA 2O6IA 5D22A 3OG4A 3O7QA 4IKVA 4YBQA 3L5WI 3UEZE 3DI2A 4DKCA 1M48A 4A3JD 1HIKA 3HOZD 3G9VB 1EKUA 2B90A 1PGRA 5C3ED 3DUHC 1QVNA 1B5LA 3H3VE 1PW4A 1ITLA 2R7ZD 1BP3A 4A3LD 1ILKA 5IYDD 4LEPA 1ETEA 4D2BA 4BBRD 2ERJD 2LAGA 2D9QA 4O9HA 5D6KA 3BPOA 4A3BD 4NKQC 4ZWCA 2V8NA 2KZ1A 4DOHA 1ITFA 4TPGA 1A22A 2HYMB 2R93D 3PO2D 4J4LC 1PV7A 4NEMA 4J05A 1CYLA 2L3OA 3PO3D 1PY2A 3I4ND 3IRHA 1RW5A 2B8XA 4ZF7A 1M4AA 1HZIA 3D85C 4IKWA 3HOXD 4A3DD 4A93D 4U4TA 4IKYA 5EQHA 2L3YA 3D87A 5A2NA 1I1RB 4RS1A 1RHGA 1BUYA 2OQPA 1EVSA 2INTA 5IYCD 3HOVD 5D59A 4O6KA 5FHXA 1JLIA 5C65A 1P9MB 1HWHA 4NEJA 4TPJA 2B5IA 1BGCA 2Z3RA
chains in the Genus database with same CATH topology
4IKVA 4XNIA 2CFQA 2Y5YA 4Q65A 4XNJA 4W6VA 4YBQA 2XUTA 3O7PA 4ZWCA 4D2CA 4TPHA 2V8NA 4UVMA 4YB9D 1PW4A 4IKZA 2CFPA 4IU9A 4IKWA 4JA3A 5D59A 3WDOA 4TPGA 5D58A 5C65A 4PYPA 1PV6A 4IU8A 4U4TA 5EQIA 4IKYA 5EQHA 4APSA 5A2OA 4LEPA 4GBZA 4D2BA 4QIQA 5EQGA 4TPJA 1PV7A 4OH3A 4ZW9A 5GXBA 5A2NA 4U4WA 4J05A 4JREA 4D2DA 4GBYA 4IKXA 4LDSA 4JR9A 4U4VA 4ZYRA 4GC0A 3O7QA 4ZWBA 5D6KA 4OAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IKV A;  4XNI A;  2CFQ A;  2Y5Y A;  4Q65 A;  4XNJ A;  4W6V A;  4YBQ A;  2XUT A;  3O7P A;  4ZWC A;  4D2C A;  4TPH A;  2V8N A;  4UVM A;  4YB9 D;  1PW4 A;  4IKZ A;  2CFP A;  4IU9 A;  4IKW A;  4JA3 A;  5D59 A;  3WDO A;  4TPG A;  5D58 A;  5C65 A;  4PYP A;  1PV6 A;  4IU8 A;  4U4T A;  5EQI A;  4IKY A;  5EQH A;  4APS A;  5A2O A;  4LEP A;  4GBZ A;  4D2B A;  4QIQ A;  5EQG A;  4TPJ A;  1PV7 A;  4OH3 A;  4ZW9 A;  5GXB A;  5A2N A;  4U4W A;  4J05 A;  4JRE A;  4D2D A;  4GBY A;  4IKX A;  4LDS A;  4JR9 A;  4U4V A;  4ZYR A;  4GC0 A;  3O7Q A;  4ZWB A;  5D6K A;  4OAA A; 
#chains in the Genus database with same CATH topology
 2O26 A;  3EJJ A;  2GMF A;  4I77 Z;  3S9D A;  1D9C A;  4DKF A;  4WRL B;  3HOY D;  1HUW A;  1LK3 A;  1HGU A;  1PV6 A;  3NCB A;  5EQI A;  5D72 A;  2Z3Q A;  2C35 A;  5FLM D;  2Q98 A;  3VA2 A;  1RCB A;  1M49 A;  1IL6 A;  5C7X A;  1AU1 A;  2PSM A;  2XUT A;  1LKI A;  1V7N V;  2B63 D;  1NBP A;  2CYK A;  3OQ3 A;  1M47 A;  1EMR A;  5D58 A;  1LQS L;  4ZS7 A;  4PYP A;  3QT2 C;  1Y1V D;  4A3I D;  1PW6 A;  3UX9 A;  1BBN A;  4A3G D;  4A3F D;  1YKB A;  2O27 A;  4GC0 A;  2E9W C;  4XNJ A;  3O7P A;  4NI7 A;  4YB9 D;  4YPG C;  3HOW D;  4A3K D;  4A3E D;  4EXN A;  3WDO A;  1F45 B;  3HOU D;  1PVH B;  4GBZ A;  5FUC A;  3LB6 B;  4A3M D;  4NI9 A;  1AX8 A;  1M4B A;  2B91 A;  4OAA A;  1BGD A;  2B8Y A;  5E4E A;  5L6Y C;  2CFP A;  3UF2 A;  5D28 B;  2B8U A;  3G6D A;  1RFB A;  4YUE C;  1M4R A;  3BPL A;  2LMS A;  1HWG A;  3BES L;  1CD9 A;  3HHC A;  3PIW A;  1M4C A;  5C4X D;  1GNC A;  1Z92 A;  3I4M D;  1IAR A;  4BY7 D;  5D70 A;  1Y6M L;  4GBY A;  1HIJ A;  1Y6K L;  4XNI A;  1ITM A;  4Q65 A;  4D2C A;  1CSG A;  4IU9 A;  1BCN A;  3H0G D;  1IRL A;  3EW3 A;  3NPZ A;  4IU8 A;  5C44 D;  3FKI D;  5A2O A;  1EER A;  3LB6 A;  5EQG A;  4ZW9 A;  3INK C;  2XQB A;  3NCF A;  4IKX A;  3WCY I;  4LDS A;  4CNI C;  4EXP A;  1N1F A;  3AYH A;  4GS7 A;  1Y1W D;  3L5X A;  1A7M A;  2VUM D;  3N06 A;  1KF9 A;  1AXI A;  1HUL A;  3BPN A;  1Y6N L;  2B8Z A;  3SE4 B;  1CN4 C;  4U4V A;  4ZYR A;  3QWR B;  4DKE A;  3B5K A;  4YQX A;  1GA3 A;  2JA7 D;  3SE3 B;  4YDY I;  3OG6 A;  1D9G A;  5D71 A;  1WU3 I;  4FA8 E;  3MZG A;  3QB7 A;  4MHL A;  4GRW A;  1Z7C A;  2ILK A;  3NCE A;  1J7V L;  2IL6 A;  3DI3 A;  1FG9 A;  1F6F A;  3TGX B;  4DKD A;  5IP9 D;  1CNT 1;  3NCC A;  4A3C D;  3UF5 A;  1WCM D;  4TPH A;  4BBS D;  3DGC L;  3PIV A;  2JA5 D;  2R92 D;  3HMX B;  3QB1 A;  1ALU A;  4NN6 A;  3HHR A;  2H24 A;  4OH3 A;  5IYB D;  4JRE A;  2JA8 D;  4LRL A;  4JR9 A;  4ZWB A;  1EXZ A;  1V7M V;  4NN7 A;  2CFQ A;  2Y5Y A;  5KNH I;  1BGE A;  5IP7 D;  1FYH A;  3Q1S I;  2Q7N B;  1ITI A;  4UVM A;  1Y14 A;  4BY1 D;  4JA3 A;  1IK0 A;  4APS A;  4QIQ A;  5GXB A;  4U4W A;  2Q14 A;  4D2D A;  1INR A;  4NN5 A;  2JA6 D;  4PS4 A;  3DLQ I;  5LQB A;  4Z5R D;  1IJZ A;  4W6V A;  4BXX D;  4IKZ A;  4X51 A;  3D48 P;  3QAZ A;  5TS9 A;  1VLK A;  2D48 A;  3N0P A;  1SCF A;  2O6I A;  5D22 A;  3OG4 A;  3O7Q A;  4IKV A;  4YBQ A;  3L5W I;  3UEZ E;  3DI2 A;  4DKC A;  1M48 A;  4A3J D;  1HIK A;  3HOZ D;  3G9V B;  1EKU A;  2B90 A;  1PGR A;  5C3E D;  3DUH C;  1QVN A;  1B5L A;  3H3V E;  1PW4 A;  1ITL A;  2R7Z D;  1BP3 A;  4A3L D;  1ILK A;  5IYD D;  4LEP A;  1ETE A;  4D2B A;  4BBR D;  2ERJ D;  2LAG A;  2D9Q A;  4O9H A;  5D6K A;  3BPO A;  4A3B D;  4NKQ C;  4ZWC A;  2V8N A;  2KZ1 A;  4DOH A;  1ITF A;  4TPG A;  1A22 A;  2HYM B;  2R93 D;  3PO2 D;  4J4L C;  1PV7 A;  4NEM A;  4J05 A;  1CYL A;  2L3O A;  3PO3 D;  1PY2 A;  3I4N D;  3IRH A;  1RW5 A;  2B8X A;  4ZF7 A;  1M4A A;  1HZI A;  3D85 C;  4IKW A;  3HOX D;  4A3D D;  4A93 D;  4U4T A;  4IKY A;  5EQH A;  2L3Y A;  3D87 A;  5A2N A;  1I1R B;  4RS1 A;  1RHG A;  1BUY A;  2OQP A;  1EVS A;  2INT A;  5IYC D;  3HOV D;  5D59 A;  4O6K A;  5FHX A;  1JLI A;  5C65 A;  1P9M B;  1HWH A;  4NEJ A;  4TPJ A;  2B5I A;  1BGC A;  2Z3R A; 
#chains in the Genus database with same CATH homology
 4IKV A;  4XNI A;  2CFQ A;  2Y5Y A;  4Q65 A;  4XNJ A;  4W6V A;  4YBQ A;  2XUT A;  3O7P A;  4ZWC A;  4D2C A;  4TPH A;  2V8N A;  4UVM A;  4YB9 D;  1PW4 A;  4IKZ A;  2CFP A;  4IU9 A;  4IKW A;  4JA3 A;  5D59 A;  3WDO A;  4TPG A;  5D58 A;  5C65 A;  4PYP A;  1PV6 A;  4IU8 A;  4U4T A;  5EQI A;  4IKY A;  5EQH A;  4APS A;  5A2O A;  4LEP A;  4GBZ A;  4D2B A;  4QIQ A;  5EQG A;  4TPJ A;  1PV7 A;  4OH3 A;  4ZW9 A;  5GXB A;  5A2N A;  4U4W A;  4J05 A;  4JRE A;  4D2D A;  4GBY A;  4IKX A;  4LDS A;  4JR9 A;  4U4V A;  4ZYR A;  4GC0 A;  3O7Q A;  4ZWB A;  5D6K A;  4OAA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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