4OBMA

Crystal structure of a putative transcription regulator (eubsir_01389) from eubacterium siraeum dsm 15702 at 2.15 a resolution
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
258
structure length
258
Chain Sequence
KDATVNVSQNQTAIFTPDSTYDFSVLMTLSADNDKTPDKYMTITYIAKNNTFVLMPYLPNAVIDGGNTIKQICEQSGEAEVAKLLSSKTGLSINKYIRFTKSTLTELFDMVGNTTLTVPSEIKYENKKDNTVTIIKKGTQIFTAEQMYAYLTLPDYGVKDELYPCKLNATVISSFIDQNFIGTSSKTLDEYINFIINFTNTNIEQSDYDAKVKAIVYTLSQNKSSVTDFYIPYGDKSGDDYIIDDNSWNSAKKALGTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator
molecule keywords Uncharacterized protein
publication title Crystal structure of a hypothetical protein (EUBSIR_01389) from Eubacterium siraeum DSM 15702 at 2.15 A resolution
rcsb
source organism Eubacterium siraeum
total genus 77
structure length 258
sequence length 258
ec nomenclature
pdb deposition date 2014-01-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 4obmA00
4OBMA 3NXHA 2XXPA 4DE9A 3TEPA 3OWQA 3QFIA 2XXQA 3OKZA 3MEJA 3TFLA 3NROA 3TELA 4DE8A 3PE5A
chains in the Genus database with same CATH superfamily
1NEQA 2PUGA 3BDNA 4ER5A 1HQ1A 2PXPA 4X4CA 3QOXA 4ER6A 1LLIA 1QQBA 3R1FA 2GRMA 2PUEA 3MEJA 2YBDA 2PXEA 3GN5A 3BD1A 1JFSA 1SQ8A 2BJCA 4I8TA 3QYXA 4EQZA 3F52A 2LYKA 2LYQA 2HFZA 1QZXA 4DE8A 2PXTA 2PXUA 2M4HA 3GZDA 3RZZA 1QP0A 1Y7YA 2XXQA 2MQKA 2LYRA 1DW9A 1X57A 2PXVA 3NXHA 3U3WA 1U2ZA 3G5GA 2LLVA 2J7WA 5K98B 1EFAA 2HCSA 1X2LA 1UXCA 2O38A 2B5AA 3UFDA 2BNOA 3IVPA 4J1WA 3R09A 4FN3A 2EWTA 3NROA 1WH6A 3SCGA 3VK0A 2AXVA 2KEKA 1AU7A 4PU7A 2O49A 5DTRA 2L49A 1S7EA 2JVLA 1ZZ9A 3FYAA 3S8QA 4X4FA 2HSGA 1QB2A 3SR4A 1UTXA 3G0TA 1QQAA 1JFTA 3FMYA 3QWGA 1RIOA 1DULA 1DWKA 2HCNA 1BDIA 4YG7B 3OWQA 1LCDA 3TRBA 3JXDL 3SCHA 2KPJA 3A9YA 1O4XA 2XCJA 1PNRA 3LISA 2PUCA 2XSDC 3M9LA 3CECA 3QFIA 4HRAA 2EF8A 4JCYA 2XJ3A 1RZRA 3VWSA 2H8RA 4I6TA 1RZSA 2LCVA 2PE5A 1NW3A 5DRYA 2IU7A 1WETA 3GBFA 2PUBA 4Z5CA 2LYPA 2FJRA 2GZUA 3OMTA 3OP9A 4EK9A 2WUSR 1ZZ7A 2ICPA 1OSLA 2PXLA 4Z5DA 1LQCA 1IC8A 3GUUA 3HZIB 4YG1A 1PRVA 4O8BA 1LCCA 2WIUB 4X4IA 2J7UA 1ZUGA 3KZ3A 2PPXA 1ZPQA 3QOWA 3JXCL 3D1NI 1GT0C 1ZZBA 3OKZA 1RZRD 1CQTA 1Y9QA 3KJXA 2GRLA 5A7LA 3MLFA 2A6CA 3OQOA 2D5VA 2LNMA 2L1PA 4YBAA 2AW6A 2KEJA 2BNNA 4Z59A 2MEZA 1ZZ6A 1PRUA 2LYJA 3FYMA 1PERL 2KEIA 2AUWA 1WIZA 1ZS4A 2LYLA 4F8DA 2R1JL 2JQEA 1ZZCA 1UXDA 3NDBB 3BS3A 1ZZ8A 3TFLA 1JH9A 4J1XA 5DTQA 5JUWA 4NDWA 3QF3A 3F51A 4X4DA 2ODRD 2PXKA 1L1MA 3ZKCA 2R63A 1QP4A 2CROA 2PUFA 2IV1A 4GQMA 2CSFA 3SX0A 3CLCA 1QPZA 4Z5HA 1WH8A 2PXQA 2VEOA 4IA8A 3O9XA 3PE5A 4DE9A 3UWPA 1BDHA 1OCTC 2AXZA 3G7DA 1ADRA 3OQNA 3TEPA 2PXFA 2XIUA 1POUA 4Q2JA 1HF0A 1E3OC 4X4HA 1R63A 3CROL 1XWRA 4JQDA 2AWIA 3DNVB 5DTMA 4GHJA 4PU3C 1LMB3 4Z58A 1QP7A 2KZ8A 2JCGA 2OFYA 3F6WA 2ICTA 3A9ZA 3PXPA 3B7HA 3KXAA 3OQMA 2PXBA 3KL4A 2BNMA 4MCXA 4X4GA 2AXUA 2IVGA 2LLWA 2IVQA 1YSEA 4FBIA 4MCTA 1R69A 3ZPXA 3L1PA 3ZHIA 4I6UA 2LYSA 3DM5A 3NZLA 2PUAA 2HINA 3LFPA 4EZIA 4X4BA 4JCXA 4ER3A 3QQ6A 1B0NA 3JXBC 4IVZA 2V3CC 2EBYA 3ZHMA 5GAGi 3ME5A 5DRTA 5DSXA 3A9XA 2XI8A 3GN5B 4X4EA 4YARA 5GAHi 1NERA 3GZCA 4EKGA 3GZDC 2PXDA 3SCFA 2PIJA 4WVLA 4IWRA 3LQXA 4OBMA 4PU8A 4I6RA 4PU4C 1ZVVA 3TELA 1PRAA 4ER7A 2XXPA 1JWLA 1CJGA 2OR1L 2PUDA 4EKIA 2IVBA 1RPEL 1MFQC 3EUSA 4ER0A 1ZAYA 5DT2A 4YG4A 2L8NA 2MXDA 2FFHA 3H5TA 4Y42A 2XXAA 2O4AA 1VPWA 4OB4A 2IUOA
chains in the Genus database with same CATH topology
4OBMA 3SX0A 4EK9A 4EZIA 2HCNA 5DTQA 3R09A 3VWSA 4ER3A 4ER5A 3NROA 3TELA 5JUWA 4ER7A 2LLWA 3NXHA 2XXPA 3GUUA 3OWQA 1U2ZA 1NW3A 4EQZA 5DRYA 3ME5A 2VEOA 4EKIA 2ODRD 2LLVA 5DRTA 5DTMA 2J7WA 3QOXA 3PE5A 5DSXA 3A9XA 3A9YA 4ER0A 4ER6A 2HCSA 2LNMA 3UWPA 2J7UA 2L1PA 3SR4A 3ZPXA 4DE9A 5DT2A 2HFZA 3G0TA 4DE8A 3QOWA 2MXDA 5DTRA 3NZLA 2M4HA 3GZCA 3GZDA 3M9LA 4EKGA 3TEPA 3QFIA 3GZDC 2XXQA 3OKZA 3MEJA 2YBDA 4HRAA 3TFLA 4Q2JA 4WVLA 3A9ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OBM A;  3NXH A;  2XXP A;  4DE9 A;  3TEP A;  3OWQ A;  3QFI A;  2XXQ A;  3OKZ A;  3MEJ A;  3TFL A;  3NRO A;  3TEL A;  4DE8 A;  3PE5 A; 
#chains in the Genus database with same CATH topology
 1NEQ A;  2PUG A;  3BDN A;  4ER5 A;  1HQ1 A;  2PXP A;  4X4C A;  3QOX A;  4ER6 A;  1LLI A;  1QQB A;  3R1F A;  2GRM A;  2PUE A;  3MEJ A;  2YBD A;  2PXE A;  3GN5 A;  3BD1 A;  1JFS A;  1SQ8 A;  2BJC A;  4I8T A;  3QYX A;  4EQZ A;  3F52 A;  2LYK A;  2LYQ A;  2HFZ A;  1QZX A;  4DE8 A;  2PXT A;  2PXU A;  2M4H A;  3GZD A;  3RZZ A;  1QP0 A;  1Y7Y A;  2XXQ A;  2MQK A;  2LYR A;  1DW9 A;  1X57 A;  2PXV A;  3NXH A;  3U3W A;  1U2Z A;  3G5G A;  2LLV A;  2J7W A;  5K98 B;  1EFA A;  2HCS A;  1X2L A;  1UXC A;  2O38 A;  2B5A A;  3UFD A;  2BNO A;  3IVP A;  4J1W A;  3R09 A;  4FN3 A;  2EWT A;  3NRO A;  1WH6 A;  3SCG A;  3VK0 A;  2AXV A;  2KEK A;  1AU7 A;  4PU7 A;  2O49 A;  5DTR A;  2L49 A;  1S7E A;  2JVL A;  1ZZ9 A;  3FYA A;  3S8Q A;  4X4F A;  2HSG A;  1QB2 A;  3SR4 A;  1UTX A;  3G0T A;  1QQA A;  1JFT A;  3FMY A;  3QWG A;  1RIO A;  1DUL A;  1DWK A;  2HCN A;  1BDI A;  4YG7 B;  3OWQ A;  1LCD A;  3TRB A;  3JXD L;  3SCH A;  2KPJ A;  3A9Y A;  1O4X A;  2XCJ A;  1PNR A;  3LIS A;  2PUC A;  2XSD C;  3M9L A;  3CEC A;  3QFI A;  4HRA A;  2EF8 A;  4JCY A;  2XJ3 A;  1RZR A;  3VWS A;  2H8R A;  4I6T A;  1RZS A;  2LCV A;  2PE5 A;  1NW3 A;  5DRY A;  2IU7 A;  1WET A;  3GBF A;  2PUB A;  4Z5C A;  2LYP A;  2FJR A;  2GZU A;  3OMT A;  3OP9 A;  4EK9 A;  2WUS R;  1ZZ7 A;  2ICP A;  1OSL A;  2PXL A;  4Z5D A;  1LQC A;  1IC8 A;  3GUU A;  3HZI B;  4YG1 A;  1PRV A;  4O8B A;  1LCC A;  2WIU B;  4X4I A;  2J7U A;  1ZUG A;  3KZ3 A;  2PPX A;  1ZPQ A;  3QOW A;  3JXC L;  3D1N I;  1GT0 C;  1ZZB A;  3OKZ A;  1RZR D;  1CQT A;  1Y9Q A;  3KJX A;  2GRL A;  5A7L A;  3MLF A;  2A6C A;  3OQO A;  2D5V A;  2LNM A;  2L1P A;  4YBA A;  2AW6 A;  2KEJ A;  2BNN A;  4Z59 A;  2MEZ A;  1ZZ6 A;  1PRU A;  2LYJ A;  3FYM A;  1PER L;  2KEI A;  2AUW A;  1WIZ A;  1ZS4 A;  2LYL A;  4F8D A;  2R1J L;  2JQE A;  1ZZC A;  1UXD A;  3NDB B;  3BS3 A;  1ZZ8 A;  3TFL A;  1JH9 A;  4J1X A;  5DTQ A;  5JUW A;  4NDW A;  3QF3 A;  3F51 A;  4X4D A;  2ODR D;  2PXK A;  1L1M A;  3ZKC A;  2R63 A;  1QP4 A;  2CRO A;  2PUF A;  2IV1 A;  4GQM A;  2CSF A;  3SX0 A;  3CLC A;  1QPZ A;  4Z5H A;  1WH8 A;  2PXQ A;  2VEO A;  4IA8 A;  3O9X A;  3PE5 A;  4DE9 A;  3UWP A;  1BDH A;  1OCT C;  2AXZ A;  3G7D A;  1ADR A;  3OQN A;  3TEP A;  2PXF A;  2XIU A;  1POU A;  4Q2J A;  1HF0 A;  1E3O C;  4X4H A;  1R63 A;  3CRO L;  1XWR A;  4JQD A;  2AWI A;  3DNV B;  5DTM A;  4GHJ A;  4PU3 C;  1LMB 3;  4Z58 A;  1QP7 A;  2KZ8 A;  2JCG A;  2OFY A;  3F6W A;  2ICT A;  3A9Z A;  3PXP A;  3B7H A;  3KXA A;  3OQM A;  2PXB A;  3KL4 A;  2BNM A;  4MCX A;  4X4G A;  2AXU A;  2IVG A;  2LLW A;  2IVQ A;  1YSE A;  4FBI A;  4MCT A;  1R69 A;  3ZPX A;  3L1P A;  3ZHI A;  4I6U A;  2LYS A;  3DM5 A;  3NZL A;  2PUA A;  2HIN A;  3LFP A;  4EZI A;  4X4B A;  4JCX A;  4ER3 A;  3QQ6 A;  1B0N A;  3JXB C;  4IVZ A;  2V3C C;  2EBY A;  3ZHM A;  5GAG i;  3ME5 A;  5DRT A;  5DSX A;  3A9X A;  2XI8 A;  3GN5 B;  4X4E A;  4YAR A;  5GAH i;  1NER A;  3GZC A;  4EKG A;  3GZD C;  2PXD A;  3SCF A;  2PIJ A;  4WVL A;  4IWR A;  3LQX A;  4OBM A;  4PU8 A;  4I6R A;  4PU4 C;  1ZVV A;  3TEL A;  1PRA A;  4ER7 A;  2XXP A;  1JWL A;  1CJG A;  2OR1 L;  2PUD A;  4EKI A;  2IVB A;  1RPE L;  1MFQ C;  3EUS A;  4ER0 A;  1ZAY A;  5DT2 A;  4YG4 A;  2L8N A;  2MXD A;  2FFH A;  3H5T A;  4Y42 A;  2XXA A;  2O4A A;  1VPW A;  4OB4 A;  2IUO A; 
#chains in the Genus database with same CATH homology
 4OBM A;  3SX0 A;  4EK9 A;  4EZI A;  2HCN A;  5DTQ A;  3R09 A;  3VWS A;  4ER3 A;  4ER5 A;  3NRO A;  3TEL A;  5JUW A;  4ER7 A;  2LLW A;  3NXH A;  2XXP A;  3GUU A;  3OWQ A;  1U2Z A;  1NW3 A;  4EQZ A;  5DRY A;  3ME5 A;  2VEO A;  4EKI A;  2ODR D;  2LLV A;  5DRT A;  5DTM A;  2J7W A;  3QOX A;  3PE5 A;  5DSX A;  3A9X A;  3A9Y A;  4ER0 A;  4ER6 A;  2HCS A;  2LNM A;  3UWP A;  2J7U A;  2L1P A;  3SR4 A;  3ZPX A;  4DE9 A;  5DT2 A;  2HFZ A;  3G0T A;  4DE8 A;  3QOW A;  2MXD A;  5DTR A;  3NZL A;  2M4H A;  3GZC A;  3GZD A;  3M9L A;  4EKG A;  3TEP A;  3QFI A;  3GZD C;  2XXQ A;  3OKZ A;  3MEJ A;  2YBD A;  4HRA A;  3TFL A;  4Q2J A;  4WVL A;  3A9Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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