4OC8A

Dna modification-dependent restriction endonuclease aspbhi
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
387
structure length
387
Chain Sequence
b'TFFTGETLGQVDLIVDAVYAGYKTERGGMADPLVPLVGVSRQGGFRYRGTRERPTLLVLTSNLAEPEWPDQLDETTGTFIYYGDNRHPGRLLHDTPRFGNQLLRQIFDWAHLGQRHLVPPILVFTTEATGRTFRFRGLAVPGSPALAATEDLVALWKTTEGQRFQNYKAVFTILDEAVIPRAWVHAVGRGETSGLAPVAWNAWLSAGGIRPLMAPRSLLVRSKAEQLPATPEDQALIEVIRQRYKENPFGFEACAGALTRLLLPDVARLDLTRPWRDGGRDGIGRLRIGQSPAAIEVDFALEAKCYGANNAVGVKEVSRLISRIKHREFGVLVTTSYVDRQAYQEVTDDGHPVILTTAQDIVGLLRSAGVRTPTQVDAWLDGITASV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords restriction endonuclease AspBHI
publication title Structure and mutagenesis of the DNA modification-dependent restriction endonuclease AspBHI.
pubmed doi rcsb
source organism Azoarcus sp.
molecule tags Hydrolase
total genus 110
structure length 387
sequence length 387
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04471 Mrr_cat Restriction endonuclease
A PF18062 RE_AspBHI_N Restriction endonuclease AspBHI N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.280.20 Mainly Beta Roll PUA domain-like PUA domain-like 4oc8A01
3.40.91.100 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 4oc8A02
4F0QA 4RZLA 4F0PA 4R28A 4OC8A
chains in the Genus database with same CATH superfamily
3HW5A 4AVQA 1SDOA 1ESGA 4E5EA 3Q0CA 2FQZA 4R28A 4PW7A 3F8JB 4YGIA 3WVPA 3F8IA 3WVIA 3V1ZA 5FDDA 4AWGA 3BI7A 2ZO2B 3HW3A 2P0JA 2ZO0B 4CHCA 5D2OA 5JHTA 2FOKA 5FDGA 3CAEA 1ES8A 4RZLA 3DWHA 4PW5A 3FDEA 4AWHA 2ZKFA 2EWFA 3ODHA 2ZKGA 2XI7A 4AWFA 3EBJA 3HW6A 2ZO1B 1DC1A 4YYLA 3N7BA 4PW6A 4NFZA 2PFJA 1D2IA 5CL0A 5DBSA 5D42A 2BAMA 5DEBA 4AWMA 1VRRA 1BHMA 2PB7A 5D8UA 2E52A 1BAMA 4E5GA 4AWKA 4ZI0A 4AVLA 1M0IA 4E5IA 4E5HA 4CGXA 3Q0DA 3Q0BX 5I13A 3N78A 3DPGA 1FZRA 4E5LA 3Q0FA 2XI5A 3WVKA 4CGSA 5CGVA 4OC8A 2ZKEA 1DFMA 3V21A 4E5JA 4F0PA 1FOKA 4NJ5A 5CCYA 3MQYA 5CZNA 4AVGA 4F0QA 2ZKDA 3BAMA 1KNVA 5JHVA 1CFRA 3WVGA 5D9JA 3MQ6A 3OLNA 3WVHA 3DW9A 5D4GA 5DESA 3A4KA 5EGAA 4E5FA 3BM3A 3V20A 3CLZA 4ZHZA 4ZQQA 2GB7A 3HW4A 1M0DA 3DVOA 2P14A
chains in the Genus database with same CATH topology
3HW5A 4AVQA 1SDOA 1ESGA 4E5EA 3Q0CA 2FQZA 4R28A 4YGIA 3WVPA 3WVIA 3V1ZA 5FDDA 4AWGA 3HW3A 2P0JA 4CHCA 5D2OA 5JHTA 2FOKA 5FDGA 3CAEA 1ES8A 4RZLA 2EWFA 3ODHA 2XI7A 4AWFA 3EBJA 3HW6A 1DC1A 4YYLA 3N7BA 4NFZA 2PFJA 1D2IA 5CL0A 5DBSA 5D42A 2BAMA 5DEBA 4AWMA 1VRRA 1BHMA 5D8UA 2E52A 1BAMA 4E5GA 4AWKA 4ZI0A 4AVLA 1M0IA 4E5IA 4E5HA 4CGXA 3Q0DA 3Q0BX 5I13A 3N78A 3DPGA 1FZRA 4E5LA 3Q0FA 2XI5A 3WVKA 4CGSA 5CGVA 4OC8A 2P14A 1DFMA 3V21A 4E5JA 4F0PA 1FOKA 5CCYA 3MQYA 5CZNA 4AVGA 4F0QA 3BAMA 1KNVA 5JHVA 1CFRA 3WVGA 5D9JA 3MQ6A 3WVHA 3DW9A 5D4GA 5DESA 3A4KA 5EGAA 4E5FA 3BM3A 3V20A 4ZHZA 4ZQQA 2GB7A 3HW4A 1M0DA 3DVOA 4AWHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F0Q A;  4RZL A;  4F0P A;  4R28 A;  4OC8 A; 
#chains in the Genus database with same CATH topology
 3HW5 A;  4AVQ A;  1SDO A;  1ESG A;  4E5E A;  3Q0C A;  2FQZ A;  4R28 A;  4PW7 A;  3F8J B;  4YGI A;  3WVP A;  3F8I A;  3WVI A;  3V1Z A;  5FDD A;  4AWG A;  3BI7 A;  2ZO2 B;  3HW3 A;  2P0J A;  2ZO0 B;  4CHC A;  5D2O A;  5JHT A;  2FOK A;  5FDG A;  3CAE A;  1ES8 A;  4RZL A;  3DWH A;  4PW5 A;  3FDE A;  4AWH A;  2ZKF A;  2EWF A;  3ODH A;  2ZKG A;  2XI7 A;  4AWF A;  3EBJ A;  3HW6 A;  2ZO1 B;  1DC1 A;  4YYL A;  3N7B A;  4PW6 A;  4NFZ A;  2PFJ A;  1D2I A;  5CL0 A;  5DBS A;  5D42 A;  2BAM A;  5DEB A;  4AWM A;  1VRR A;  1BHM A;  2PB7 A;  5D8U A;  2E52 A;  1BAM A;  4E5G A;  4AWK A;  4ZI0 A;  4AVL A;  1M0I A;  4E5I A;  4E5H A;  4CGX A;  3Q0D A;  3Q0B X;  5I13 A;  3N78 A;  3DPG A;  1FZR A;  4E5L A;  3Q0F A;  2XI5 A;  3WVK A;  4CGS A;  5CGV A;  4OC8 A;  2ZKE A;  1DFM A;  3V21 A;  4E5J A;  4F0P A;  1FOK A;  4NJ5 A;  5CCY A;  3MQY A;  5CZN A;  4AVG A;  4F0Q A;  2ZKD A;  3BAM A;  1KNV A;  5JHV A;  1CFR A;  3WVG A;  5D9J A;  3MQ6 A;  3OLN A;  3WVH A;  3DW9 A;  5D4G A;  5DES A;  3A4K A;  5EGA A;  4E5F A;  3BM3 A;  3V20 A;  3CLZ A;  4ZHZ A;  4ZQQ A;  2GB7 A;  3HW4 A;  1M0D A;  3DVO A;  2P14 A; 
#chains in the Genus database with same CATH homology
 3HW5 A;  4AVQ A;  1SDO A;  1ESG A;  4E5E A;  3Q0C A;  2FQZ A;  4R28 A;  4YGI A;  3WVP A;  3WVI A;  3V1Z A;  5FDD A;  4AWG A;  3HW3 A;  2P0J A;  4CHC A;  5D2O A;  5JHT A;  2FOK A;  5FDG A;  3CAE A;  1ES8 A;  4RZL A;  2EWF A;  3ODH A;  2XI7 A;  4AWF A;  3EBJ A;  3HW6 A;  1DC1 A;  4YYL A;  3N7B A;  4NFZ A;  2PFJ A;  1D2I A;  5CL0 A;  5DBS A;  5D42 A;  2BAM A;  5DEB A;  4AWM A;  1VRR A;  1BHM A;  5D8U A;  2E52 A;  1BAM A;  4E5G A;  4AWK A;  4ZI0 A;  4AVL A;  1M0I A;  4E5I A;  4E5H A;  4CGX A;  3Q0D A;  3Q0B X;  5I13 A;  3N78 A;  3DPG A;  1FZR A;  4E5L A;  3Q0F A;  2XI5 A;  3WVK A;  4CGS A;  5CGV A;  4OC8 A;  2P14 A;  1DFM A;  3V21 A;  4E5J A;  4F0P A;  1FOK A;  5CCY A;  3MQY A;  5CZN A;  4AVG A;  4F0Q A;  3BAM A;  1KNV A;  5JHV A;  1CFR A;  3WVG A;  5D9J A;  3MQ6 A;  3WVH A;  3DW9 A;  5D4G A;  5DES A;  3A4K A;  5EGA A;  4E5F A;  3BM3 A;  3V20 A;  4ZHZ A;  4ZQQ A;  2GB7 A;  3HW4 A;  1M0D A;  3DVO A;  4AWH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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