4OCHA

Apo structure of smr domain of muts2 from deinococcus radiodurans
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
82
structure length
82
Chain Sequence
RFDNELQLRGLSVEAAVEELRAAIAEARALKETPLRVVHGKGMGVLRRTLRDYLKTDKNVESFHDAEANQGGHGVTIVNVKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Endonuclease MutS2
publication title Structural and functional studies of MutS2 from Deinococcus radiodurans.
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 28
structure length 82
sequence length 82
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01713 Smr Smr domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.110 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4ochA00
4OCHA 2ZQEA 3QD7X 3FAUA 2VKCA 2D9IA 4OD6A
chains in the Genus database with same CATH superfamily
4JI0H 4DV2H 2JVZA 1TUAA 2FFMA 2BA0A 1F0XA 3J7AK 1WE8A 2JZXA 4YHHH 5C0XG 2E5LH 3GR5A 5BR8H 1V9NA 2QNDA 4LFAH 1Z2IA 1HNXH 4DV0H 1UG8A 4JI8H 4E9JA 1NXUA 4OX9H 1WTJA 2VKCA 3UOEA 3T1YH 4K0KH 4KHPH 2CPQA 1FKAH 1WVNA 4OD6A 2BL5A 2M6QA 1SEIA 4AIMA 4LF5H 4PDBA 2JEBI 4JI5H 4X64H 2MJHA 4FJSA 1IBLH 2JE6I 5A2QW 2JEAI 2UXCH 1HR0H 3J81W 2VQEH 1VIHA 4LF4H 2CWFA 4DR5H 3EZJA 4JYAH 4NZRM 4LFBH 5IWAH 3NCVA 1N34H 4DR6H 3OTOH 1EC6A 4DV4H 2FMRA 3I0PA 2HH3A 2P2RA 4B3MH 2LTLA 1VBIA 1FJGH 1X9ZA 5DT9A 4BA1I 2ANNA 4DR1H 4DR2H 2ZM6H 2NN6G 3KDGA 5LL6b 2UXBH 2HH2A 4LF6H 1N33H 2K1HA 1ZTGA 2UU9H 4NXMH 3SB1A 2AXYA 5LMUH 4DR3H 2LTMA 2UXDH 4G08A 4DV1H 4JI3H 4X65H 4AQYH 3GABA 3OSSD 2HHHH 1WHRA 4LFCH 3L7ZC 3T1HH 1XRHA 5LMNH 3GKUA 2Z0SA 4DV3H 2CTJA 3QD7X 4JI1H 5FLXW 4NZTM 3JAMW 1ODHA 4DUZH 2E3UA 3RF2A 4B8TA 2LRRA 2UUAH 2PQUA 4OCHA 1MSZA 4AM3A 2CWHA 4DV7H 4EC5A 1PQXA 2OPVA 3FAUA 1X0AA 3VKEA 1K1GA 1HNZH 4LF7H 4IFDG 1DTJA 2FPHX 1VIGA 2CPMA 4OO1G 3J80W 2M8WA 1XMQH 1N36H 1KHMA 2DGRA 4X62H 4DUYH 2PY9A 4JV5H 2ANRA 2UUCH 1X4MA 2ZQEA 4DV5H 1I6UA 1IBMH 1X4NA 1J5EH 4WALA 1DT4A 2G8YA 1HNWH 3AEVB 1J5KA 4JI7H 2CTLA 4GKKH 4LF9H 2YQRA 4NXNH 1AN7A 4JI4H 1ZZIA 3OETA 2O4CA 2OPUA 2JA9A 1S03G 4DR7H 1IBKH 1V8CA 4WANA 4X66H 3KDKA 1ZZKA 2Y3MA 4QMFB 1J4WA 3V69A 2CTEA 1ZZJA 4JI2H 1XNQH 5K36G 4B8CD 2A1SA 3U1KA 2CTFA 1XMOH 4B3SH 4LF8H 2CTKA 5JEAG 4B3RH 1XNRH 2UUBH 5IT9W 2F4VH 4JI6H 2VQFH 4H8AA 4LIJA 4FJUA 4NBQA 2CTMA 4YY3H 2PT7G 2D9IA 4JVYA 4JVHA 4GKJH 1N32H 2LF0A 4BA2I 1I94H 4B3TH 4DV6H 4DR4H 1S20A 2X06A
chains in the Genus database with same CATH topology
4JI0H 4DV2H 3J7AK 1F0XA 4YHHH 2E5LH 3GR5A 5BR8H 4LFAH 1HNXH 4DV0H 4JI8H 4E9JA 4OX9H 4K0KH 2VKCA 3T1YH 4KHPH 1FKAH 4OD6A 1SEIA 4LF5H 4PDBA 4JI5H 4X64H 1IBLH 5A2QW 2UXCH 1HR0H 3J81W 2VQEH 4LF4H 4DR5H 3EZJA 4JYAH 4NZRM 4LFBH 5IWAH 3NCVA 1N34H 4DR6H 3OTOH 4DV4H 4B3MH 1FJGH 1X9ZA 5DT9A 4DR1H 4DR2H 2ZM6H 3KDGA 5LL6b 2UXBH 4LF6H 1N33H 2UU9H 4NXMH 3SB1A 5LMUH 4DR3H 2UXDH 4G08A 4DV1H 4JI3H 4X65H 4AQYH 3GABA 3OSSD 2HHHH 4LFCH 3T1HH 5LMNH 4DV3H 3QD7X 4JI1H 5FLXW 4NZTM 3JAMW 1ODHA 4DUZH 3RF2A 2UUAH 4OCHA 4DV7H 4EC5A 3FAUA 1HNZH 4LF7H 2FPHX 3J80W 1XMQH 1N36H 4X62H 4DUYH 4JV5H 2UUCH 2ZQEA 1I6UA 4DV5H 1IBMH 1J5EH 1HNWH 4JI7H 4GKKH 4LF9H 4NXNH 1AN7A 4JI4H 3OETA 2O4CA 1S03G 4DR7H 1IBKH 4X66H 3KDKA 2Y3MA 1XNQH 4JI2H 4B8CD 4LF8H 1XMOH 4B3SH 4B3RH 1XNRH 2UUBH 5IT9W 2F4VH 4JI6H 2VQFH 4YY3H 2PT7G 4GKJH 1N32H 2LF0A 1I94H 4B3TH 4DV6H 4DR4H 2D9IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OCH A;  2ZQE A;  3QD7 X;  3FAU A;  2VKC A;  2D9I A;  4OD6 A; 
#chains in the Genus database with same CATH topology
 4JI0 H;  4DV2 H;  2JVZ A;  1TUA A;  2FFM A;  2BA0 A;  1F0X A;  3J7A K;  1WE8 A;  2JZX A;  4YHH H;  5C0X G;  2E5L H;  3GR5 A;  5BR8 H;  1V9N A;  2QND A;  4LFA H;  1Z2I A;  1HNX H;  4DV0 H;  1UG8 A;  4JI8 H;  4E9J A;  1NXU A;  4OX9 H;  1WTJ A;  2VKC A;  3UOE A;  3T1Y H;  4K0K H;  4KHP H;  2CPQ A;  1FKA H;  1WVN A;  4OD6 A;  2BL5 A;  2M6Q A;  1SEI A;  4AIM A;  4LF5 H;  4PDB A;  2JEB I;  4JI5 H;  4X64 H;  2MJH A;  4FJS A;  1IBL H;  2JE6 I;  5A2Q W;  2JEA I;  2UXC H;  1HR0 H;  3J81 W;  2VQE H;  1VIH A;  4LF4 H;  2CWF A;  4DR5 H;  3EZJ A;  4JYA H;  4NZR M;  4LFB H;  5IWA H;  3NCV A;  1N34 H;  4DR6 H;  3OTO H;  1EC6 A;  4DV4 H;  2FMR A;  3I0P A;  2HH3 A;  2P2R A;  4B3M H;  2LTL A;  1VBI A;  1FJG H;  1X9Z A;  5DT9 A;  4BA1 I;  2ANN A;  4DR1 H;  4DR2 H;  2ZM6 H;  2NN6 G;  3KDG A;  5LL6 b;  2UXB H;  2HH2 A;  4LF6 H;  1N33 H;  2K1H A;  1ZTG A;  2UU9 H;  4NXM H;  3SB1 A;  2AXY A;  5LMU H;  4DR3 H;  2LTM A;  2UXD H;  4G08 A;  4DV1 H;  4JI3 H;  4X65 H;  4AQY H;  3GAB A;  3OSS D;  2HHH H;  1WHR A;  4LFC H;  3L7Z C;  3T1H H;  1XRH A;  5LMN H;  3GKU A;  2Z0S A;  4DV3 H;  2CTJ A;  3QD7 X;  4JI1 H;  5FLX W;  4NZT M;  3JAM W;  1ODH A;  4DUZ H;  2E3U A;  3RF2 A;  4B8T A;  2LRR A;  2UUA H;  2PQU A;  4OCH A;  1MSZ A;  4AM3 A;  2CWH A;  4DV7 H;  4EC5 A;  1PQX A;  2OPV A;  3FAU A;  1X0A A;  3VKE A;  1K1G A;  1HNZ H;  4LF7 H;  4IFD G;  1DTJ A;  2FPH X;  1VIG A;  2CPM A;  4OO1 G;  3J80 W;  2M8W A;  1XMQ H;  1N36 H;  1KHM A;  2DGR A;  4X62 H;  4DUY H;  2PY9 A;  4JV5 H;  2ANR A;  2UUC H;  1X4M A;  2ZQE A;  4DV5 H;  1I6U A;  1IBM H;  1X4N A;  1J5E H;  4WAL A;  1DT4 A;  2G8Y A;  1HNW H;  3AEV B;  1J5K A;  4JI7 H;  2CTL A;  4GKK H;  4LF9 H;  2YQR A;  4NXN H;  1AN7 A;  4JI4 H;  1ZZI A;  3OET A;  2O4C A;  2OPU A;  2JA9 A;  1S03 G;  4DR7 H;  1IBK H;  1V8C A;  4WAN A;  4X66 H;  3KDK A;  1ZZK A;  2Y3M A;  4QMF B;  1J4W A;  3V69 A;  2CTE A;  1ZZJ A;  4JI2 H;  1XNQ H;  5K36 G;  4B8C D;  2A1S A;  3U1K A;  2CTF A;  1XMO H;  4B3S H;  4LF8 H;  2CTK A;  5JEA G;  4B3R H;  1XNR H;  2UUB H;  5IT9 W;  2F4V H;  4JI6 H;  2VQF H;  4H8A A;  4LIJ A;  4FJU A;  4NBQ A;  2CTM A;  4YY3 H;  2PT7 G;  2D9I A;  4JVY A;  4JVH A;  4GKJ H;  1N32 H;  2LF0 A;  4BA2 I;  1I94 H;  4B3T H;  4DV6 H;  4DR4 H;  1S20 A;  2X06 A; 
#chains in the Genus database with same CATH homology
 4JI0 H;  4DV2 H;  3J7A K;  1F0X A;  4YHH H;  2E5L H;  3GR5 A;  5BR8 H;  4LFA H;  1HNX H;  4DV0 H;  4JI8 H;  4E9J A;  4OX9 H;  4K0K H;  2VKC A;  3T1Y H;  4KHP H;  1FKA H;  4OD6 A;  1SEI A;  4LF5 H;  4PDB A;  4JI5 H;  4X64 H;  1IBL H;  5A2Q W;  2UXC H;  1HR0 H;  3J81 W;  2VQE H;  4LF4 H;  4DR5 H;  3EZJ A;  4JYA H;  4NZR M;  4LFB H;  5IWA H;  3NCV A;  1N34 H;  4DR6 H;  3OTO H;  4DV4 H;  4B3M H;  1FJG H;  1X9Z A;  5DT9 A;  4DR1 H;  4DR2 H;  2ZM6 H;  3KDG A;  5LL6 b;  2UXB H;  4LF6 H;  1N33 H;  2UU9 H;  4NXM H;  3SB1 A;  5LMU H;  4DR3 H;  2UXD H;  4G08 A;  4DV1 H;  4JI3 H;  4X65 H;  4AQY H;  3GAB A;  3OSS D;  2HHH H;  4LFC H;  3T1H H;  5LMN H;  4DV3 H;  3QD7 X;  4JI1 H;  5FLX W;  4NZT M;  3JAM W;  1ODH A;  4DUZ H;  3RF2 A;  2UUA H;  4OCH A;  4DV7 H;  4EC5 A;  3FAU A;  1HNZ H;  4LF7 H;  2FPH X;  3J80 W;  1XMQ H;  1N36 H;  4X62 H;  4DUY H;  4JV5 H;  2UUC H;  2ZQE A;  1I6U A;  4DV5 H;  1IBM H;  1J5E H;  1HNW H;  4JI7 H;  4GKK H;  4LF9 H;  4NXN H;  1AN7 A;  4JI4 H;  3OET A;  2O4C A;  1S03 G;  4DR7 H;  1IBK H;  4X66 H;  3KDK A;  2Y3M A;  1XNQ H;  4JI2 H;  4B8C D;  4LF8 H;  1XMO H;  4B3S H;  4B3R H;  1XNR H;  2UUB H;  5IT9 W;  2F4V H;  4JI6 H;  2VQF H;  4YY3 H;  2PT7 G;  4GKJ H;  1N32 H;  2LF0 A;  1I94 H;  4B3T H;  4DV6 H;  4DR4 H;  2D9I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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