4OCLA

Crystal structure of the rpn8-rpn11 mpn domain heterodimer, crystal form ia
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
172
structure length
163
Chain Sequence
HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQKTFLHLPCTIEAEEAEEIGVEHLLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase, protein binding
molecule keywords 26S proteasome regulatory subunit RPN8
publication title Crystal structure of the proteasomal deubiquitylation module Rpn8-Rpn11.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 41
structure length 163
sequence length 172
chains with identical sequence D
ec nomenclature
pdb deposition date 2014-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01398 JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 4oclA00
4EG2A 4MSJA 4HRWA 2RPZA 2O95A 4E0QA 1MQ0A 1JTKA 4ZD4A 2B3ZA 4ZFTA 2KCQA 3IJFX 3ZPCA 2FR5A 2HXVA 3OJ6A 3OCQA 1CTUA 4LD4A 4OWPB 2NX8A 4ZD5A 4QFTA 4OCMA 4P9DA 4HRQA 2D5NA 2O7PA 2P87A 4MSDA 4O8XA 4F3WA 1TIYA 3MPZA 2W4LA 1ALNA 3DMOA 3E1UA 4LCPA 2OG4A 2B3JA 2QLCA 1VQ2A 4PQTA 4OCLB 5GAOA 4BGDC 2PW9A 1UX1A 1CTTA 1R5TA 2ZNRA 1R5XA 1RB7A 4O8YB 4WIGA 1OX7A 4OCNB 4OWPA 2HVWA 3G8QA 1Z3AA 3R2NA 2O3KA 4F7OA 3B8FA 4LCNA 4I43B 2ZNVA 4WIFA 2G84A 3DH1A 1P6OA 1WN5A 4LC5A 3ZPGA 1UWZA 2HVVA 2Z3HA 4K1RA 4P9EA 2P8RA 1OI0A 3RZVA 3EX8A 1WKQA 4JXEA 4OCLA 2A8NA 4D10F 2NYTA 4ZFRA 1WWRA 1YSDA 5M52C 2FR6A 2OBCA 1YSBA 2G6VA 1UAQA 5M59B 1WN6A 4MS7A 5DCAJ 4MSQA 4O8YA 4MSMA 1ZABA 4ILGC 5CW6A 1AF2A 4OCNA 2KKSA 2Z3JA 4NQLA 4P9CA 4LCOA 5C2OA 3ZEFB 2Z3GA 1UX0A 2D30A 2Z3IA 4KITC 3SBGA 4OCMB 4LD2A 3RZUA 2O96A 4O8XB 4G3MA
chains in the Genus database with same CATH superfamily
4EG2A 4MSJA 4HRWA 1PKXA 2RPZA 2O95A 4E0QA 1MQ0A 1JTKA 4ZD4A 2B3ZA 4ZFTA 2KCQA 3IJFX 3ZPCA 2FR5A 3BH1A 2HXVA 3OJ6A 3OCQA 1CTUA 4LD4A 4OWPB 2NX8A 4ZD5A 4QFTA 3VX8A 4OCMA 4P9DA 1OZ0A 4GGMX 4HRQA 2D5NA 2O7PA 2P87A 4MSDA 4O8XA 4F3WA 1TIYA 3MPZA 2W4LA 4J6EA 4A1OA 1VK9A 1ALNA 3DMOA 3E1UA 4LCPA 2OG4A 2IU3A 2B3JA 2QLCA 1VQ2A 4PQTA 4OCLB 5GAOA 2B1IA 4BGDC 2PW9A 1ZCZA 3ZZMA 1UX1A 1CTTA 1R5TA 2ZNRA 1R5XA 1RB7A 4O8YB 4WIGA 1OX7A 4OCNB 4OWPA 1P4RA 2HVWA 1Z3AA 3G8QA 3R2NA 1M9NA 2O3KA 4F7OA 3B8FA 4LCNA 4I43B 2ZNVA 4WIFA 2G84A 3DH1A 4EHIA 1P6OA 1WN5A 2IU0A 2B1GA 4LC5A 3ZPGA 1UWZA 2HVVA 2Z3HA 4K1RA 4P9EA 2P8RA 1OI0A 3RZVA 1PL0A 3EX8A 1WKQA 4JXEA 4OCLA 2A8NA 4D10F 2NYTA 4ZFRA 1WWRA 1YSDA 5M52C 2FR6A 2OBCA 1YSBA 2G6VA 1UAQA 5M59B 1WN6A 4MS7A 5DCAJ 4MSQA 4O8YA 4MSMA 1ZABA 4ILGC 5CW6A 1AF2A 4OCNA 2KKSA 2Z3JA 1G8MA 4NQLA 4P9CA 4LCOA 5C2OA 3ZEFB 2Z3GA 1THZA 1UX0A 2D30A 2Z3IA 4KITC 3SBGA 4OCMB 4LD2A 3RZUA 2O96A 4O8XB 4G3MA
chains in the Genus database with same CATH topology
4EG2A 4MSJA 4HRWA 2RPZA 2O95A 4E0QA 1MQ0A 1JTKA 4ZD4A 2B3ZA 4ZFTA 2KCQA 3IJFX 3ZPCA 2FR5A 2HXVA 3OJ6A 3OCQA 1CTUA 4LD4A 4OWPB 2NX8A 4ZD5A 4QFTA 4OCMA 4P9DA 4HRQA 2D5NA 2O7PA 2P87A 4MSDA 4O8XA 4F3WA 1TIYA 3MPZA 2W4LA 1ALNA 3DMOA 3E1UA 4LCPA 2OG4A 2B3JA 2QLCA 1VQ2A 4PQTA 4OCLB 5GAOA 4BGDC 2PW9A 1UX1A 1CTTA 1R5TA 2ZNRA 1R5XA 1RB7A 4O8YB 4WIGA 1OX7A 4OCNB 4OWPA 2HVWA 3G8QA 1Z3AA 3R2NA 2O3KA 4F7OA 3B8FA 4LCNA 4I43B 2ZNVA 4WIFA 2G84A 3DH1A 1P6OA 1WN5A 4LC5A 3ZPGA 1UWZA 2HVVA 2Z3HA 4K1RA 4P9EA 2P8RA 1OI0A 3RZVA 3EX8A 1WKQA 4JXEA 4OCLA 2A8NA 4D10F 2NYTA 4ZFRA 1WWRA 1YSDA 5M52C 2FR6A 2OBCA 1YSBA 2G6VA 1UAQA 5M59B 1WN6A 4MS7A 5DCAJ 4MSQA 4O8YA 4MSMA 1ZABA 4ILGC 5CW6A 1AF2A 4OCNA 2KKSA 2Z3JA 4NQLA 4P9CA 4LCOA 5C2OA 3ZEFB 2Z3GA 1UX0A 2D30A 2Z3IA 4KITC 3SBGA 4OCMB 4LD2A 3RZUA 2O96A 4O8XB 4G3MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EG2 A;  4MSJ A;  4HRW A;  2RPZ A;  2O95 A;  4E0Q A;  1MQ0 A;  1JTK A;  4ZD4 A;  2B3Z A;  4ZFT A;  2KCQ A;  3IJF X;  3ZPC A;  2FR5 A;  2HXV A;  3OJ6 A;  3OCQ A;  1CTU A;  4LD4 A;  4OWP B;  2NX8 A;  4ZD5 A;  4QFT A;  4OCM A;  4P9D A;  4HRQ A;  2D5N A;  2O7P A;  2P87 A;  4MSD A;  4O8X A;  4F3W A;  1TIY A;  3MPZ A;  2W4L A;  1ALN A;  3DMO A;  3E1U A;  4LCP A;  2OG4 A;  2B3J A;  2QLC A;  1VQ2 A;  4PQT A;  4OCL B;  5GAO A;  4BGD C;  2PW9 A;  1UX1 A;  1CTT A;  1R5T A;  2ZNR A;  1R5X A;  1RB7 A;  4O8Y B;  4WIG A;  1OX7 A;  4OCN B;  4OWP A;  2HVW A;  3G8Q A;  1Z3A A;  3R2N A;  2O3K A;  4F7O A;  3B8F A;  4LCN A;  4I43 B;  2ZNV A;  4WIF A;  2G84 A;  3DH1 A;  1P6O A;  1WN5 A;  4LC5 A;  3ZPG A;  1UWZ A;  2HVV A;  2Z3H A;  4K1R A;  4P9E A;  2P8R A;  1OI0 A;  3RZV A;  3EX8 A;  1WKQ A;  4JXE A;  4OCL A;  2A8N A;  4D10 F;  2NYT A;  4ZFR A;  1WWR A;  1YSD A;  5M52 C;  2FR6 A;  2OBC A;  1YSB A;  2G6V A;  1UAQ A;  5M59 B;  1WN6 A;  4MS7 A;  5DCA J;  4MSQ A;  4O8Y A;  4MSM A;  1ZAB A;  4ILG C;  5CW6 A;  1AF2 A;  4OCN A;  2KKS A;  2Z3J A;  4NQL A;  4P9C A;  4LCO A;  5C2O A;  3ZEF B;  2Z3G A;  1UX0 A;  2D30 A;  2Z3I A;  4KIT C;  3SBG A;  4OCM B;  4LD2 A;  3RZU A;  2O96 A;  4O8X B;  4G3M A; 
#chains in the Genus database with same CATH topology
 4EG2 A;  4MSJ A;  4HRW A;  1PKX A;  2RPZ A;  2O95 A;  4E0Q A;  1MQ0 A;  1JTK A;  4ZD4 A;  2B3Z A;  4ZFT A;  2KCQ A;  3IJF X;  3ZPC A;  2FR5 A;  3BH1 A;  2HXV A;  3OJ6 A;  3OCQ A;  1CTU A;  4LD4 A;  4OWP B;  2NX8 A;  4ZD5 A;  4QFT A;  3VX8 A;  4OCM A;  4P9D A;  1OZ0 A;  4GGM X;  4HRQ A;  2D5N A;  2O7P A;  2P87 A;  4MSD A;  4O8X A;  4F3W A;  1TIY A;  3MPZ A;  2W4L A;  4J6E A;  4A1O A;  1VK9 A;  1ALN A;  3DMO A;  3E1U A;  4LCP A;  2OG4 A;  2IU3 A;  2B3J A;  2QLC A;  1VQ2 A;  4PQT A;  4OCL B;  5GAO A;  2B1I A;  4BGD C;  2PW9 A;  1ZCZ A;  3ZZM A;  1UX1 A;  1CTT A;  1R5T A;  2ZNR A;  1R5X A;  1RB7 A;  4O8Y B;  4WIG A;  1OX7 A;  4OCN B;  4OWP A;  1P4R A;  2HVW A;  1Z3A A;  3G8Q A;  3R2N A;  1M9N A;  2O3K A;  4F7O A;  3B8F A;  4LCN A;  4I43 B;  2ZNV A;  4WIF A;  2G84 A;  3DH1 A;  4EHI A;  1P6O A;  1WN5 A;  2IU0 A;  2B1G A;  4LC5 A;  3ZPG A;  1UWZ A;  2HVV A;  2Z3H A;  4K1R A;  4P9E A;  2P8R A;  1OI0 A;  3RZV A;  1PL0 A;  3EX8 A;  1WKQ A;  4JXE A;  4OCL A;  2A8N A;  4D10 F;  2NYT A;  4ZFR A;  1WWR A;  1YSD A;  5M52 C;  2FR6 A;  2OBC A;  1YSB A;  2G6V A;  1UAQ A;  5M59 B;  1WN6 A;  4MS7 A;  5DCA J;  4MSQ A;  4O8Y A;  4MSM A;  1ZAB A;  4ILG C;  5CW6 A;  1AF2 A;  4OCN A;  2KKS A;  2Z3J A;  1G8M A;  4NQL A;  4P9C A;  4LCO A;  5C2O A;  3ZEF B;  2Z3G A;  1THZ A;  1UX0 A;  2D30 A;  2Z3I A;  4KIT C;  3SBG A;  4OCM B;  4LD2 A;  3RZU A;  2O96 A;  4O8X B;  4G3M A; 
#chains in the Genus database with same CATH homology
 4EG2 A;  4MSJ A;  4HRW A;  2RPZ A;  2O95 A;  4E0Q A;  1MQ0 A;  1JTK A;  4ZD4 A;  2B3Z A;  4ZFT A;  2KCQ A;  3IJF X;  3ZPC A;  2FR5 A;  2HXV A;  3OJ6 A;  3OCQ A;  1CTU A;  4LD4 A;  4OWP B;  2NX8 A;  4ZD5 A;  4QFT A;  4OCM A;  4P9D A;  4HRQ A;  2D5N A;  2O7P A;  2P87 A;  4MSD A;  4O8X A;  4F3W A;  1TIY A;  3MPZ A;  2W4L A;  1ALN A;  3DMO A;  3E1U A;  4LCP A;  2OG4 A;  2B3J A;  2QLC A;  1VQ2 A;  4PQT A;  4OCL B;  5GAO A;  4BGD C;  2PW9 A;  1UX1 A;  1CTT A;  1R5T A;  2ZNR A;  1R5X A;  1RB7 A;  4O8Y B;  4WIG A;  1OX7 A;  4OCN B;  4OWP A;  2HVW A;  3G8Q A;  1Z3A A;  3R2N A;  2O3K A;  4F7O A;  3B8F A;  4LCN A;  4I43 B;  2ZNV A;  4WIF A;  2G84 A;  3DH1 A;  1P6O A;  1WN5 A;  4LC5 A;  3ZPG A;  1UWZ A;  2HVV A;  2Z3H A;  4K1R A;  4P9E A;  2P8R A;  1OI0 A;  3RZV A;  3EX8 A;  1WKQ A;  4JXE A;  4OCL A;  2A8N A;  4D10 F;  2NYT A;  4ZFR A;  1WWR A;  1YSD A;  5M52 C;  2FR6 A;  2OBC A;  1YSB A;  2G6V A;  1UAQ A;  5M59 B;  1WN6 A;  4MS7 A;  5DCA J;  4MSQ A;  4O8Y A;  4MSM A;  1ZAB A;  4ILG C;  5CW6 A;  1AF2 A;  4OCN A;  2KKS A;  2Z3J A;  4NQL A;  4P9C A;  4LCO A;  5C2O A;  3ZEF B;  2Z3G A;  1UX0 A;  2D30 A;  2Z3I A;  4KIT C;  3SBG A;  4OCM B;  4LD2 A;  3RZU A;  2O96 A;  4O8X B;  4G3M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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