4ODBA

Crystal structure of the t1l reovirus attachment protein sigma1 in complex with junctional adhesion molecule-a
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
162
structure length
162
Chain Sequence
LPTYRYPLELDTANNRVQVADRFGMRTGTWTGQLQYQHPQLSWRANVTLNLMKVDDWLVLSFSQMTTNSIMADGKFVINFVSGLSSGWQTGDTEPSSTIDPLSTTFAAVQFLNNGQRIDAFRIMGVSEWTDGELEIKNYGGTYTGHTQVYWAPWTIMYPCNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Outer capsid protein sigma-1
publication title The JAM-A binding site is conserved in reovirus sigma1: Structure of the T1L sigma1-JAM-A complex
rcsb
source organism Mammalian orthoreovirus 1
total genus 30
structure length 162
sequence length 162
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-01-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.20 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Virus attachment protein , globular domain 4odbA00
4ODBA 2OJ6A 3EOYA 4XC5A 5MHSA 1KKEA 3S6XA 4GU4A 4GU3A 2OJ5A
chains in the Genus database with same CATH superfamily
2WGTA 3ZPEA 2O39A 2J2JA 4D63A 2OJ6A 1QHVA 2JJLA 1P6AA 4K6WA 1KNBA 3EXVA 2QLKA 4K6VA 4WYJA 4XC5A 2WGUA 4XQBA 4CW8A 5MHSA 3BQ4A 1UXAA 2OJ5A 4LIYA 4ATZA 1P69A 3ZPFA 4D62A 1KKEA 1KACA 2J12A 2WBVA 2WSTA 2IUNA 2BSFA 3L88A 4GU3A 3S6XA 2IUMA 4ODBA 1QIUA 2BT7A 3EOYA 1UXEA 3O8EA 1H7ZA 3F0YA 2BT8A 4K6UA 4XQAA 2W9LC 2BZUA 2VRSA 3L89A 2VTWA 3QNDA 2WBWA 3N0IA 3EXWA 4ZDGA 2BZVA 1UXBA 1NOBA 3CNCA 4GU4A 4K6TA 4XL8A 2J1KC
chains in the Genus database with same CATH topology
4ODBA 2OJ6A 3EOYA 4XC5A 5MHSA 1KKEA 3S6XA 4GU4A 4GU3A 2OJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ODB A;  2OJ6 A;  3EOY A;  4XC5 A;  5MHS A;  1KKE A;  3S6X A;  4GU4 A;  4GU3 A;  2OJ5 A; 
#chains in the Genus database with same CATH topology
 2WGT A;  3ZPE A;  2O39 A;  2J2J A;  4D63 A;  2OJ6 A;  1QHV A;  2JJL A;  1P6A A;  4K6W A;  1KNB A;  3EXV A;  2QLK A;  4K6V A;  4WYJ A;  4XC5 A;  2WGU A;  4XQB A;  4CW8 A;  5MHS A;  3BQ4 A;  1UXA A;  2OJ5 A;  4LIY A;  4ATZ A;  1P69 A;  3ZPF A;  4D62 A;  1KKE A;  1KAC A;  2J12 A;  2WBV A;  2WST A;  2IUN A;  2BSF A;  3L88 A;  4GU3 A;  3S6X A;  2IUM A;  4ODB A;  1QIU A;  2BT7 A;  3EOY A;  1UXE A;  3O8E A;  1H7Z A;  3F0Y A;  2BT8 A;  4K6U A;  4XQA A;  2W9L C;  2BZU A;  2VRS A;  3L89 A;  2VTW A;  3QND A;  2WBW A;  3N0I A;  3EXW A;  4ZDG A;  2BZV A;  1UXB A;  1NOB A;  3CNC A;  4GU4 A;  4K6T A;  4XL8 A;  2J1K C; 
#chains in the Genus database with same CATH homology
 4ODB A;  2OJ6 A;  3EOY A;  4XC5 A;  5MHS A;  1KKE A;  3S6X A;  4GU4 A;  4GU3 A;  2OJ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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