4OH3A

Crystal structure of a nitrate transporter
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
568
structure length
512
Chain Sequence
DDILLDAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNAAIRDQEAGVTSTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRLAEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein, tranport protein
molecule keywords Nitrate transporter 1.1
publication title Crystal structure of the plant dual-affinity nitrate transporter NRT1.1.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 185
structure length 512
sequence length 568
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4oh3A00
4TPGA 5GXBA 5A2NA 4D2CA 4ZYRA 2CFQA 3O7PA 5D59A 1PV7A 4W6VA 4TPHA 4ZW9A 4IKZA 4D2DA 4LEPA 4Q65A 4XNJA 4YBQA 4IKYA 4OAAA 4D2BA 4APSA 5D58A 4U4WA 4JA3A 2CFPA 4QIQA 4XNIA 5D6KA 4LDSA 5EQIA 4IU8A 4OH3A 4ZWBA 4GC0A 4IKXA 4GBZA 4JREA 4UVMA 3WDOA 5EQGA 4ZWCA 1PV6A 1PW4A 3O7QA 4U4VA 4YB9D 2V8NA 4IU9A 4IKVA 4GBYA 4J05A 4TPJA 5A2OA 5C65A 4IKWA 4PYPA 2Y5YA 5EQHA 4JR9A 2XUTA 4U4TA
chains in the Genus database with same CATH superfamily
5D72A 5IP9D 3HOVD 1INRA 1SCFA 4U4WA 5FUCA 1V7MV 3QAZA 5D70A 3I4ND 1A7MA 1N1FA 1PV6A 4YB9D 3D85C 3G9VB 3PO3D 4ZS7A 4JR9A 5A2NA 3MZGA 3HHRA 2B8ZA 4LEPA 2D9QA 3HOUD 1M48A 2ILKA 4Z5RD 2Q14A 1D9GA 5C44D 5D22A 4IKWA 1PW6A 4NKQC 5GXBA 4A3GD 5D59A 4IKZA 4PS4A 4DKFA 4A3MD 1PY2A 1ITFA 1HGUA 3EW3A 3PIWA 5EQIA 1PVHB 5IYBD 4O9HA 2O27A 3UF2A 2B91A 1J7VL 1IARA 4IU9A 2KZ1A 3HOYD 1CYLA 1JLIA 1ITIA 4BXXD 4D2DA 4BBRD 1HZIA 1M49A 1EMRA 4YDYI 4JREA 1BGDA 1IL6A 1PW4A 2JA5D 4MHLA 4YQXA 3DGCL 2B5IA 1GNCA 4ZW9A 2Q7NB 3BESL 4D2BA 4APSA 3UX9A 4EXPA 4LDSA 5D71A 1KF9A 1LK3A 2JA6D 3WDOA 5TS9A 1HULA 2OQPA 1V7NV 1VLKA 3N06A 1HWHA 3PO2D 3DUHC 1D9CA 3OQ3A 5FHXA 4IKYA 4OAAA 1BP3A 4OH3A 4UVMA 1CD9A 5D28B 1F45B 1B5LA 5EQGA 4ZF7A 2L3OA 4LRLA 3HMXB 1YKBA 1EERA 4J4LC 2B8YA 2VUMD 1EVSA 4NEMA 4DKEA 4DKDA 1HIKA 2E9WC 4NI7A 2LMSA 5IYDD 2Z3RA 1AU1A 4GC0A 1LQSL 4GBZA 3IRHA 2B8XA 3O7QA 4TPJA 3QB7A 1Z7CA 2JA8D 3PIVA 3HOXD 4U4TA 1PV7A 1HWGA 4Q65A 1Y14A 1BCNA 1GA3A 2O6IA 2ERJD 4YUEC 2R7ZD 3BPNA 1FG9A 3D87A 3H0GD 2CYKA 1ETEA 3EJJA 3G6DA 5C65A 1RFBA 4NN7A 1BBNA 3O7PA 1Z92A 3S9DA 4XNJA 3DI3A 1M4AA 4XNIA 1QVNA 1BUYA 4ZWBA 1ITLA 3NCEA 1CSGA 3QB1A 1BGEA 5FLMD 3L5XA 2HYMB 3DLQI 3L5WI 1Y6ML 4X51A 4GRWA 2GMFA 2D48A 1HIJA 1RCBA 4A3JD 4NN5A 2B8UA 4IKVA 4FA8E 4EXNA 1ILKA 4CNIC 5IYCD 1FYHA 2PSMA 4BY1D 4JA3A 2CFPA 1Y1WD 1IK0A 3HHCA 4IKXA 2H24A 1HUWA 1EXZA 4WRLB 4DOHA 1P9MB 1M4CA 4TPGA 2Q98A 3FKID 4A3KD 1CNT1 3H3VE 5L6YC 3NPZA 2O26A 3NCFA 1PGRA 4NI9A 1RW5A 4U4VA 1IRLA 3BPOA 1A22A 3VA2A 4DKCA 4ZYRA 4RS1A 4YBQA 3N0PA 1AXIA 4I77Z 5C3ED 3SE4B 4IU8A 1LKIA 2IL6A 5E4EA 3WCYI 5LQBA 2L3YA 3AYHA 3D48P 3OG6A 4A3ED 4GBYA 2LAGA 1Y6NL 4PYPA 3HOZD 2B90A 4TPHA 4O6KA 4A3BD 5D58A 3HOWD 3LB6B 4A3FD 1BGCA 4ZWCA 5C7XA 5A2OA 2Z3QA 4NEJA 2R93D 2XUTA 3NCCA 3LB6A 4NN6A 1NBPA 4QIQA 5D6KA 4A93D 4GS7A 3OG4A 1ITMA 3Q1SI 2V8NA 3DI2A 3QT2C 3B5KA 1M4BA 4YPGC 1M4RA 2XQBA 2INTA 3BPLA 1ALUA 2Y5YA 3QWRB 5EQHA 1WU3I 1EKUA 4D2CA 2CFQA 4W6VA 4A3DD 3INKC 3SE3B 3NCBA 4A3ID 2JA7D 1CN4C 1F6FA 3I4MD 5IP7D 4A3LD 1Y1VD 3TGXB 2R92D 1WCMD 1I1RB 1AX8A 4BY7D 4A3CD 3UF5A 1IJZA 1RHGA 1Y6KL 4J05A 2B63D 5KNHI 5C4XD 1M47A 3UEZE 2C35A 4BBSD
chains in the Genus database with same CATH topology
4TPGA 5GXBA 5A2NA 4D2CA 4ZYRA 2CFQA 3O7PA 5D59A 1PV7A 4W6VA 4TPHA 4ZW9A 4IKZA 4D2DA 4LEPA 4Q65A 4XNJA 4YBQA 4IKYA 4OAAA 4D2BA 4APSA 5D58A 4U4WA 4JA3A 2CFPA 4QIQA 4XNIA 5D6KA 4LDSA 5EQIA 4IU8A 4OH3A 4ZWBA 4GC0A 4IKXA 4GBZA 4JREA 4UVMA 3WDOA 5EQGA 4ZWCA 1PV6A 1PW4A 3O7QA 4U4VA 4YB9D 2V8NA 4IU9A 4IKVA 4GBYA 4J05A 4TPJA 5A2OA 5C65A 4IKWA 4PYPA 2Y5YA 5EQHA 4JR9A 2XUTA 4U4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TPG A;  5GXB A;  5A2N A;  4D2C A;  4ZYR A;  2CFQ A;  3O7P A;  5D59 A;  1PV7 A;  4W6V A;  4TPH A;  4ZW9 A;  4IKZ A;  4D2D A;  4LEP A;  4Q65 A;  4XNJ A;  4YBQ A;  4IKY A;  4OAA A;  4D2B A;  4APS A;  5D58 A;  4U4W A;  4JA3 A;  2CFP A;  4QIQ A;  4XNI A;  5D6K A;  4LDS A;  5EQI A;  4IU8 A;  4OH3 A;  4ZWB A;  4GC0 A;  4IKX A;  4GBZ A;  4JRE A;  4UVM A;  3WDO A;  5EQG A;  4ZWC A;  1PV6 A;  1PW4 A;  3O7Q A;  4U4V A;  4YB9 D;  2V8N A;  4IU9 A;  4IKV A;  4GBY A;  4J05 A;  4TPJ A;  5A2O A;  5C65 A;  4IKW A;  4PYP A;  2Y5Y A;  5EQH A;  4JR9 A;  2XUT A;  4U4T A; 
#chains in the Genus database with same CATH topology
 5D72 A;  5IP9 D;  3HOV D;  1INR A;  1SCF A;  4U4W A;  5FUC A;  1V7M V;  3QAZ A;  5D70 A;  3I4N D;  1A7M A;  1N1F A;  1PV6 A;  4YB9 D;  3D85 C;  3G9V B;  3PO3 D;  4ZS7 A;  4JR9 A;  5A2N A;  3MZG A;  3HHR A;  2B8Z A;  4LEP A;  2D9Q A;  3HOU D;  1M48 A;  2ILK A;  4Z5R D;  2Q14 A;  1D9G A;  5C44 D;  5D22 A;  4IKW A;  1PW6 A;  4NKQ C;  5GXB A;  4A3G D;  5D59 A;  4IKZ A;  4PS4 A;  4DKF A;  4A3M D;  1PY2 A;  1ITF A;  1HGU A;  3EW3 A;  3PIW A;  5EQI A;  1PVH B;  5IYB D;  4O9H A;  2O27 A;  3UF2 A;  2B91 A;  1J7V L;  1IAR A;  4IU9 A;  2KZ1 A;  3HOY D;  1CYL A;  1JLI A;  1ITI A;  4BXX D;  4D2D A;  4BBR D;  1HZI A;  1M49 A;  1EMR A;  4YDY I;  4JRE A;  1BGD A;  1IL6 A;  1PW4 A;  2JA5 D;  4MHL A;  4YQX A;  3DGC L;  2B5I A;  1GNC A;  4ZW9 A;  2Q7N B;  3BES L;  4D2B A;  4APS A;  3UX9 A;  4EXP A;  4LDS A;  5D71 A;  1KF9 A;  1LK3 A;  2JA6 D;  3WDO A;  5TS9 A;  1HUL A;  2OQP A;  1V7N V;  1VLK A;  3N06 A;  1HWH A;  3PO2 D;  3DUH C;  1D9C A;  3OQ3 A;  5FHX A;  4IKY A;  4OAA A;  1BP3 A;  4OH3 A;  4UVM A;  1CD9 A;  5D28 B;  1F45 B;  1B5L A;  5EQG A;  4ZF7 A;  2L3O A;  4LRL A;  3HMX B;  1YKB A;  1EER A;  4J4L C;  2B8Y A;  2VUM D;  1EVS A;  4NEM A;  4DKE A;  4DKD A;  1HIK A;  2E9W C;  4NI7 A;  2LMS A;  5IYD D;  2Z3R A;  1AU1 A;  4GC0 A;  1LQS L;  4GBZ A;  3IRH A;  2B8X A;  3O7Q A;  4TPJ A;  3QB7 A;  1Z7C A;  2JA8 D;  3PIV A;  3HOX D;  4U4T A;  1PV7 A;  1HWG A;  4Q65 A;  1Y14 A;  1BCN A;  1GA3 A;  2O6I A;  2ERJ D;  4YUE C;  2R7Z D;  3BPN A;  1FG9 A;  3D87 A;  3H0G D;  2CYK A;  1ETE A;  3EJJ A;  3G6D A;  5C65 A;  1RFB A;  4NN7 A;  1BBN A;  3O7P A;  1Z92 A;  3S9D A;  4XNJ A;  3DI3 A;  1M4A A;  4XNI A;  1QVN A;  1BUY A;  4ZWB A;  1ITL A;  3NCE A;  1CSG A;  3QB1 A;  1BGE A;  5FLM D;  3L5X A;  2HYM B;  3DLQ I;  3L5W I;  1Y6M L;  4X51 A;  4GRW A;  2GMF A;  2D48 A;  1HIJ A;  1RCB A;  4A3J D;  4NN5 A;  2B8U A;  4IKV A;  4FA8 E;  4EXN A;  1ILK A;  4CNI C;  5IYC D;  1FYH A;  2PSM A;  4BY1 D;  4JA3 A;  2CFP A;  1Y1W D;  1IK0 A;  3HHC A;  4IKX A;  2H24 A;  1HUW A;  1EXZ A;  4WRL B;  4DOH A;  1P9M B;  1M4C A;  4TPG A;  2Q98 A;  3FKI D;  4A3K D;  1CNT 1;  3H3V E;  5L6Y C;  3NPZ A;  2O26 A;  3NCF A;  1PGR A;  4NI9 A;  1RW5 A;  4U4V A;  1IRL A;  3BPO A;  1A22 A;  3VA2 A;  4DKC A;  4ZYR A;  4RS1 A;  4YBQ A;  3N0P A;  1AXI A;  4I77 Z;  5C3E D;  3SE4 B;  4IU8 A;  1LKI A;  2IL6 A;  5E4E A;  3WCY I;  5LQB A;  2L3Y A;  3AYH A;  3D48 P;  3OG6 A;  4A3E D;  4GBY A;  2LAG A;  1Y6N L;  4PYP A;  3HOZ D;  2B90 A;  4TPH A;  4O6K A;  4A3B D;  5D58 A;  3HOW D;  3LB6 B;  4A3F D;  1BGC A;  4ZWC A;  5C7X A;  5A2O A;  2Z3Q A;  4NEJ A;  2R93 D;  2XUT A;  3NCC A;  3LB6 A;  4NN6 A;  1NBP A;  4QIQ A;  5D6K A;  4A93 D;  4GS7 A;  3OG4 A;  1ITM A;  3Q1S I;  2V8N A;  3DI2 A;  3QT2 C;  3B5K A;  1M4B A;  4YPG C;  1M4R A;  2XQB A;  2INT A;  3BPL A;  1ALU A;  2Y5Y A;  3QWR B;  5EQH A;  1WU3 I;  1EKU A;  4D2C A;  2CFQ A;  4W6V A;  4A3D D;  3INK C;  3SE3 B;  3NCB A;  4A3I D;  2JA7 D;  1CN4 C;  1F6F A;  3I4M D;  5IP7 D;  4A3L D;  1Y1V D;  3TGX B;  2R92 D;  1WCM D;  1I1R B;  1AX8 A;  4BY7 D;  4A3C D;  3UF5 A;  1IJZ A;  1RHG A;  1Y6K L;  4J05 A;  2B63 D;  5KNH I;  5C4X D;  1M47 A;  3UEZ E;  2C35 A;  4BBS D; 
#chains in the Genus database with same CATH homology
 4TPG A;  5GXB A;  5A2N A;  4D2C A;  4ZYR A;  2CFQ A;  3O7P A;  5D59 A;  1PV7 A;  4W6V A;  4TPH A;  4ZW9 A;  4IKZ A;  4D2D A;  4LEP A;  4Q65 A;  4XNJ A;  4YBQ A;  4IKY A;  4OAA A;  4D2B A;  4APS A;  5D58 A;  4U4W A;  4JA3 A;  2CFP A;  4QIQ A;  4XNI A;  5D6K A;  4LDS A;  5EQI A;  4IU8 A;  4OH3 A;  4ZWB A;  4GC0 A;  4IKX A;  4GBZ A;  4JRE A;  4UVM A;  3WDO A;  5EQG A;  4ZWC A;  1PV6 A;  1PW4 A;  3O7Q A;  4U4V A;  4YB9 D;  2V8N A;  4IU9 A;  4IKV A;  4GBY A;  4J05 A;  4TPJ A;  5A2O A;  5C65 A;  4IKW A;  4PYP A;  2Y5Y A;  5EQH A;  4JR9 A;  2XUT A;  4U4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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