4OH3A

Crystal structure of a nitrate transporter
Total Genus 185
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
568
structure length
512
Chain Sequence
DDILLDAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNAAIRDQEAGVTSTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVELKRLRTAHAPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHPWIADDLNKGRLYNFYWLVAVLVALNFLIFLVFSKWYVYKEKRLAEV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of the plant dual-affinity nitrate transporter NRT1.1.
pubmed doi rcsb
molecule keywords Nitrate transporter 1.1
molecule tags Membrane protein, tranport protein
source organism Arabidopsis thaliana
total genus 185
structure length 512
sequence length 568
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00854 PTR2 POT family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4oh3A00
1PW4A 4J05A 4U4WA 4UVMA 4YBQA 4ZW9A 4IKVA 5A2NA 4XNIA 1PV6A 4APSA 5GXBA 4IKXA 2XUTA 4U4VA 3O7QA 4XNJA 5A2OA 4ZWBA 4D2DA 4IU8A 5D6KA 2CFQA 5EQHA 4LDSA 1PV7A 4GC0A 4JR9A 5D59A 4LEPA 4TPJA 3O7PA 4PYPA 4Q65A 4GBZA 5EQGA 5D58A 3WDOA 4JA3A 4IKWA 4QIQA 4YB9D 5C65A 4TPGA 4OAAA 4IKZA 4JREA 2Y5YA 4U4TA 4W6VA 4ZWCA 4IU9A 2CFPA 4OH3A 4TPHA 2V8NA 4ZYRA 4GBYA 4D2CA 4IKYA 4D2BA 5EQIA
chains in the Genus database with same CATH superfamily
1FYHA 5A2NA 5D72A 3HHRA 3FKID 3O7QA 4ZF7A 1HGUA 2IL6A 3HOWD 4A93D 2B90A 3NPZA 2Y5YA 4W6VA 4TPHA 4FA8E 4NI9A 2CYKA 3QAZA 1PGRA 1YKBA 4NEJA 2B5IA 4IKVA 3INKC 4XNIA 4IKXA 1M4RA 4U4VA 5IYCD 4A3BD 2ILKA 5EQHA 3D85C 5D59A 3HMXB 1IRLA 2JA6D 3HHCA 1V7MV 1Y6ML 1LK3A 1LKIA 4GBYA 1SCFA 4NEMA 3UF5A 1D9GA 4J4LC 3QB1A 3OQ3A 3HOZD 1EVSA 1A7MA 1CNT1 1BCNA 3LB6B 1HWHA 4DKDA 1EXZA 2O6IA 3PIWA 1F45B 3L5WI 2B8ZA 3N06A 1B5LA 1I1RB 4A3DD 1PV7A 3G9VB 4YUEC 1Y1VD 1Y6KL 1RHGA 1Y14A 5FUCA 2Z3QA 1ITFA 4I77Z 2GMFA 1GA3A 4NN5A 4YQXA 5C3ED 3HOUD 1KF9A 4LRLA 1CSGA 4D2DA 4DOHA 3L5XA 2INTA 5D58A 1CN4C 1M48A 1NBPA 4BBSD 3VA2A 4YBQA 1HULA 4O9HA 4LDSA 1RCBA 4LEPA 1D9CA 5C44D 2JA5D 3H3VE 2LAGA 3BPLA 1INRA 2KZ1A 1RFBA 3QB7A 2O26A 1ILKA 2H24A 3DUHC 4EXNA 1Z92A 4RS1A 1JLIA 1HZIA 3LB6A 3NCCA 1V7NV 2CFQA 4JR9A 1BGDA 1M4AA 4TPJA 3OG4A 1A22A 2O27A 3DGCL 1FG9A 1GNCA 1ITIA 4D2BA 5C7XA 1IK0A 3PO3D 1IARA 1PW6A 1PV6A 4BBRD 2Q98A 2E9WC 4A3CD 3PO2D 4ZWBA 3G6DA 4EXPA 1Y1WD 4A3MD 3DLQI 5D28B 1IL6A 3SE3B 4QIQA 4U4TA 4IKZA 2D9QA 4GS7A 2Z3RA 2B63D 4NKQC 3UEZE 2D48A 4J05A 3HOYD 4A3KD 5GXBA 1BUYA 4YPGC 4GC0A 5E4EA 1HIJA 3UX9A 2HYMB 4Q65A 4O6KA 2VUMD 3HOVD 5IP9D 1EKUA 3TGXB 1Z7CA 5FLMD 3NCBA 5IYBD 1HWGA 3EW3A 1BGCA 4APSA 4NI7A 1BBNA 1J7VL 2XQBA 4IU8A 3QT2C 3PIVA 2R7ZD 1F6FA 1N1FA 4BY7D 4JA3A 2B91A 1ITLA 3BPNA 2JA7D 1ETEA 4IKYA 5D70A 3NCFA 1VLKA 3H0GD 2ERJD 5C4XD 4A3LD 2L3OA 4DKFA 4YDYI 5LQBA 2B8XA 4MHLA 1WU3I 1M4CA 2R92D 5IYDD 4OAAA 2CFPA 4A3ED 3B5KA 4A3ID 2R93D 2B8UA 4U4WA 2XUTA 3NCEA 1QVNA 3D87A 5D6KA 2C35A 3WDOA 4IKWA 4YB9D 4TPGA 4JREA 4Z5RD 4DKCA 1CYLA 1BGEA 2JA8D 3DI2A 4GRWA 1EMRA 4X51A 3WCYI 3SE4B 4NN7A 1M49A 2LMSA 2OQPA 3BPOA 3QWRB 3I4ND 1M4BA 1HIKA 3MZGA 3BESL 3UF2A 4D2CA 5EQIA 4DKEA 1PW4A 1BP3A 5KNHI 1PVHB 1Y6NL 4PYPA 1CD9A 1LQSL 1IJZA 1M47A 4PS4A 4ZWCA 5D22A 1ALUA 3N0PA 4NN6A 4UVMA 3EJJA 1PY2A 4WRLB 2B8YA 1WCMD 3O7PA 4GBZA 4BY1D 5EQGA 5D71A 3I4MD 1EERA 3OG6A 4IU9A 4OH3A 2PSMA 4ZS7A 2L3YA 1RW5A 4A3GD 5IP7D 1ITMA 3IRHA 5FHXA 3D48P 1AU1A 4ZW9A 2Q14A 4XNJA 5A2OA 4BXXD 1AXIA 2Q7NB 4A3FD 3S9DA 1HUWA 1P9MB 5L6YC 5C65A 3AYHA 3HOXD 5TS9A 2V8NA 4A3JD 4ZYRA 1AX8A 3DI3A 3Q1SI 4CNIC
chains in the Genus database with same CATH topology
1PW4A 4J05A 4U4WA 4UVMA 4YBQA 4ZW9A 4IKVA 5A2NA 4XNIA 1PV6A 4APSA 5GXBA 4IKXA 2XUTA 4U4VA 3O7QA 4XNJA 5A2OA 4ZWBA 4D2DA 4IU8A 5D6KA 2CFQA 5EQHA 4LDSA 1PV7A 4GC0A 4JR9A 5D59A 4LEPA 4TPJA 3O7PA 4PYPA 4Q65A 4GBZA 5EQGA 5D58A 3WDOA 4JA3A 4IKWA 4QIQA 4YB9D 5C65A 4TPGA 4OAAA 4IKZA 4JREA 2Y5YA 4U4TA 4W6VA 4ZWCA 4IU9A 2CFPA 4OH3A 4TPHA 2V8NA 4ZYRA 4GBYA 4D2CA 4IKYA 4D2BA 5EQIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PW4 A;  4J05 A;  4U4W A;  4UVM A;  4YBQ A;  4ZW9 A;  4IKV A;  5A2N A;  4XNI A;  1PV6 A;  4APS A;  5GXB A;  4IKX A;  2XUT A;  4U4V A;  3O7Q A;  4XNJ A;  5A2O A;  4ZWB A;  4D2D A;  4IU8 A;  5D6K A;  2CFQ A;  5EQH A;  4LDS A;  1PV7 A;  4GC0 A;  4JR9 A;  5D59 A;  4LEP A;  4TPJ A;  3O7P A;  4PYP A;  4Q65 A;  4GBZ A;  5EQG A;  5D58 A;  3WDO A;  4JA3 A;  4IKW A;  4QIQ A;  4YB9 D;  5C65 A;  4TPG A;  4OAA A;  4IKZ A;  4JRE A;  2Y5Y A;  4U4T A;  4W6V A;  4ZWC A;  4IU9 A;  2CFP A;  4OH3 A;  4TPH A;  2V8N A;  4ZYR A;  4GBY A;  4D2C A;  4IKY A;  4D2B A;  5EQI A; 
#chains in the Genus database with same CATH topology
 1FYH A;  5A2N A;  5D72 A;  3HHR A;  3FKI D;  3O7Q A;  4ZF7 A;  1HGU A;  2IL6 A;  3HOW D;  4A93 D;  2B90 A;  3NPZ A;  2Y5Y A;  4W6V A;  4TPH A;  4FA8 E;  4NI9 A;  2CYK A;  3QAZ A;  1PGR A;  1YKB A;  4NEJ A;  2B5I A;  4IKV A;  3INK C;  4XNI A;  4IKX A;  1M4R A;  4U4V A;  5IYC D;  4A3B D;  2ILK A;  5EQH A;  3D85 C;  5D59 A;  3HMX B;  1IRL A;  2JA6 D;  3HHC A;  1V7M V;  1Y6M L;  1LK3 A;  1LKI A;  4GBY A;  1SCF A;  4NEM A;  3UF5 A;  1D9G A;  4J4L C;  3QB1 A;  3OQ3 A;  3HOZ D;  1EVS A;  1A7M A;  1CNT 1;  1BCN A;  3LB6 B;  1HWH A;  4DKD A;  1EXZ A;  2O6I A;  3PIW A;  1F45 B;  3L5W I;  2B8Z A;  3N06 A;  1B5L A;  1I1R B;  4A3D D;  1PV7 A;  3G9V B;  4YUE C;  1Y1V D;  1Y6K L;  1RHG A;  1Y14 A;  5FUC A;  2Z3Q A;  1ITF A;  4I77 Z;  2GMF A;  1GA3 A;  4NN5 A;  4YQX A;  5C3E D;  3HOU D;  1KF9 A;  4LRL A;  1CSG A;  4D2D A;  4DOH A;  3L5X A;  2INT A;  5D58 A;  1CN4 C;  1M48 A;  1NBP A;  4BBS D;  3VA2 A;  4YBQ A;  1HUL A;  4O9H A;  4LDS A;  1RCB A;  4LEP A;  1D9C A;  5C44 D;  2JA5 D;  3H3V E;  2LAG A;  3BPL A;  1INR A;  2KZ1 A;  1RFB A;  3QB7 A;  2O26 A;  1ILK A;  2H24 A;  3DUH C;  4EXN A;  1Z92 A;  4RS1 A;  1JLI A;  1HZI A;  3LB6 A;  3NCC A;  1V7N V;  2CFQ A;  4JR9 A;  1BGD A;  1M4A A;  4TPJ A;  3OG4 A;  1A22 A;  2O27 A;  3DGC L;  1FG9 A;  1GNC A;  1ITI A;  4D2B A;  5C7X A;  1IK0 A;  3PO3 D;  1IAR A;  1PW6 A;  1PV6 A;  4BBR D;  2Q98 A;  2E9W C;  4A3C D;  3PO2 D;  4ZWB A;  3G6D A;  4EXP A;  1Y1W D;  4A3M D;  3DLQ I;  5D28 B;  1IL6 A;  3SE3 B;  4QIQ A;  4U4T A;  4IKZ A;  2D9Q A;  4GS7 A;  2Z3R A;  2B63 D;  4NKQ C;  3UEZ E;  2D48 A;  4J05 A;  3HOY D;  4A3K D;  5GXB A;  1BUY A;  4YPG C;  4GC0 A;  5E4E A;  1HIJ A;  3UX9 A;  2HYM B;  4Q65 A;  4O6K A;  2VUM D;  3HOV D;  5IP9 D;  1EKU A;  3TGX B;  1Z7C A;  5FLM D;  3NCB A;  5IYB D;  1HWG A;  3EW3 A;  1BGC A;  4APS A;  4NI7 A;  1BBN A;  1J7V L;  2XQB A;  4IU8 A;  3QT2 C;  3PIV A;  2R7Z D;  1F6F A;  1N1F A;  4BY7 D;  4JA3 A;  2B91 A;  1ITL A;  3BPN A;  2JA7 D;  1ETE A;  4IKY A;  5D70 A;  3NCF A;  1VLK A;  3H0G D;  2ERJ D;  5C4X D;  4A3L D;  2L3O A;  4DKF A;  4YDY I;  5LQB A;  2B8X A;  4MHL A;  1WU3 I;  1M4C A;  2R92 D;  5IYD D;  4OAA A;  2CFP A;  4A3E D;  3B5K A;  4A3I D;  2R93 D;  2B8U A;  4U4W A;  2XUT A;  3NCE A;  1QVN A;  3D87 A;  5D6K A;  2C35 A;  3WDO A;  4IKW A;  4YB9 D;  4TPG A;  4JRE A;  4Z5R D;  4DKC A;  1CYL A;  1BGE A;  2JA8 D;  3DI2 A;  4GRW A;  1EMR A;  4X51 A;  3WCY I;  3SE4 B;  4NN7 A;  1M49 A;  2LMS A;  2OQP A;  3BPO A;  3QWR B;  3I4N D;  1M4B A;  1HIK A;  3MZG A;  3BES L;  3UF2 A;  4D2C A;  5EQI A;  4DKE A;  1PW4 A;  1BP3 A;  5KNH I;  1PVH B;  1Y6N L;  4PYP A;  1CD9 A;  1LQS L;  1IJZ A;  1M47 A;  4PS4 A;  4ZWC A;  5D22 A;  1ALU A;  3N0P A;  4NN6 A;  4UVM A;  3EJJ A;  1PY2 A;  4WRL B;  2B8Y A;  1WCM D;  3O7P A;  4GBZ A;  4BY1 D;  5EQG A;  5D71 A;  3I4M D;  1EER A;  3OG6 A;  4IU9 A;  4OH3 A;  2PSM A;  4ZS7 A;  2L3Y A;  1RW5 A;  4A3G D;  5IP7 D;  1ITM A;  3IRH A;  5FHX A;  3D48 P;  1AU1 A;  4ZW9 A;  2Q14 A;  4XNJ A;  5A2O A;  4BXX D;  1AXI A;  2Q7N B;  4A3F D;  3S9D A;  1HUW A;  1P9M B;  5L6Y C;  5C65 A;  3AYH A;  3HOX D;  5TS9 A;  2V8N A;  4A3J D;  4ZYR A;  1AX8 A;  3DI3 A;  3Q1S I;  4CNI C; 
#chains in the Genus database with same CATH homology
 1PW4 A;  4J05 A;  4U4W A;  4UVM A;  4YBQ A;  4ZW9 A;  4IKV A;  5A2N A;  4XNI A;  1PV6 A;  4APS A;  5GXB A;  4IKX A;  2XUT A;  4U4V A;  3O7Q A;  4XNJ A;  5A2O A;  4ZWB A;  4D2D A;  4IU8 A;  5D6K A;  2CFQ A;  5EQH A;  4LDS A;  1PV7 A;  4GC0 A;  4JR9 A;  5D59 A;  4LEP A;  4TPJ A;  3O7P A;  4PYP A;  4Q65 A;  4GBZ A;  5EQG A;  5D58 A;  3WDO A;  4JA3 A;  4IKW A;  4QIQ A;  4YB9 D;  5C65 A;  4TPG A;  4OAA A;  4IKZ A;  4JRE A;  2Y5Y A;  4U4T A;  4W6V A;  4ZWC A;  4IU9 A;  2CFP A;  4OH3 A;  4TPH A;  2V8N A;  4ZYR A;  4GBY A;  4D2C A;  4IKY A;  4D2B A;  5EQI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...