4OJ8A

Crystal structure of carbapenem synthase in complex with (3s,5s)-carbapenam
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
271
structure length
253
Chain Sequence
SEIVKFNPVMASGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKNLDIDSDTFRDIYSAYGTIVEYVGFGYRDTLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQVFLYAAEIKNVKFRGATTVCDHALACQEMPAHLLRVLEEETFEVRVLWFKVPVFTDLGWVRKMLIYFPFDEGQPASWEPRIVGFTDHETQAFFQELGAFLKQPRYYYKHFWEDGDLLIMDNRRVIHEREEFNDDDIVRRLYRGQTAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords (5R)-carbapenem-3-carboxylate synthase
publication title Mechanism of the C5 stereoinversion reaction in the biosynthesis of carbapenem antibiotics.
pubmed doi rcsb
source organism Pectobacterium carotovorum subsp. carotovorum
total genus 70
structure length 253
sequence length 271
chains with identical sequence B, C
ec nomenclature ec 1.14.20.3: (5R)-carbapenem-3-carboxylate synthase.
pdb deposition date 2014-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 4oj8A00
2OG6A 4OJ8A 1DS1A 3EATX 3V15A 4C8RA 4BHFA 2Q4AA 1VZ4A 1DS0A 1Y0ZA 4M27A 4BHGA 1DRYA 3R1JA 1VZ5A 4M25A 4BHIA 1GVGA 1OIHA 4CWDA 1OIIA 1GQWA 1OIKA 4BGMA 4C5WA 5HSXA 3SWTA 3V17A 2R6SA 4J5IA 4Y0EA 5KEUA 2WBQA 1NX4A 2OG7A 3PVJA 4M2FA 4YLMX 3N6WA 1GY9A 1OIJA 4M26A 4NE0A 1OS7A 5J92A 4M23A 1OIJC 1OTJA 4FFAA 4M2IA 2WBPA 4BGKA 2OG5A 3O2GA 4M2EA 2WBOA 4CVYA 1JR7A 4M2GA 4M2CA 1NX8A 4BG1A 1OIJB 3MS5A 1DRTA
chains in the Genus database with same CATH superfamily
2OG6A 4OJ8A 1DS1A 3EATX 1YOXA 3V15A 4C8RA 4BHFA 2Q4AA 1VZ4A 1DS0A 1Y0ZA 4M27A 4BHGA 1DRYA 3R1JA 1VZ5A 4M25A 4BHIA 1GVGA 1OIHA 4CWDA 1OIIA 1GQWA 1OIKA 4BGMA 4C5WA 5HSXA 3SWTA 3V17A 2R6SA 4J5IA 4Y0EA 5KEUA 2WBQA 1NX4A 2OG7A 3PVJA 4M2FA 4YLMX 3N6WA 1GY9A 1OIJA 4M26A 4NE0A 1OS7A 5J92A 4M23A 1OIJC 1OTJA 4FFAA 4M2IA 2WBPA 4BGKA 2OG5A 3O2GA 4M2EA 2WBOA 4CVYA 1JR7A 4M2GA 4M2CA 1NX8A 4BG1A 1OIJB 1PG6A 3MS5A 1DRTA
chains in the Genus database with same CATH topology
4OJ8A 2CGNA 4M27A 4BHGA 4JAAA 4CWDA 1OIIA 4BGMA 2WBQA 5J92A 4FFAA 3O2GA 2WBOA 4AI8A 1NX8A 1OTJA 3MS5A 3V15A 3EATX 4B7EA 2Q4AA 4B7KA 1DS0A 1VZ5A 3P3NA 2WA4A 2W0XA 1H2NA 4Y0EA 3V17A 4M2FA 2OG7A 4YLMX 4M26A 2WBPA 1MZEA 3P3PA 4BG1A 2ILMA 1DRTA 1DS1A 2WA3A 1VZ4A 1DRYA 4M25A 1YCIA 5JWPA 2Y0IA 5HSXA 3SWTA 4Z2WA 1NX4A 3N6WA 1GY9A 4NE0A 1OS7A 1OIJC 1H2LA 4BGKA 4M2EA 4M2GA 4Z1VA 4M2CA 2CGOA 1OIJB 1GQWA 2OG6A 4NR1A 4C8RA 1H2MA 4BHFA 1Y0ZA 3R1JA 3OD4A 4BHIA 1GVGA 1OIHA 1H2KA 1OIKA 1IZ3A 3KCXA 4C5WA 2XUMA 2R6SA 4J5IA 5KEUA 3PVJA 1OIJA 4M23A 1MZFA 3KCYA 4M2IA 4BIOA 2OG5A 4CVYA 3D8CA 1JR7A 2YC0A 2YDEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OG6 A;  4OJ8 A;  1DS1 A;  3EAT X;  3V15 A;  4C8R A;  4BHF A;  2Q4A A;  1VZ4 A;  1DS0 A;  1Y0Z A;  4M27 A;  4BHG A;  1DRY A;  3R1J A;  1VZ5 A;  4M25 A;  4BHI A;  1GVG A;  1OIH A;  4CWD A;  1OII A;  1GQW A;  1OIK A;  4BGM A;  4C5W A;  5HSX A;  3SWT A;  3V17 A;  2R6S A;  4J5I A;  4Y0E A;  5KEU A;  2WBQ A;  1NX4 A;  2OG7 A;  3PVJ A;  4M2F A;  4YLM X;  3N6W A;  1GY9 A;  1OIJ A;  4M26 A;  4NE0 A;  1OS7 A;  5J92 A;  4M23 A;  1OIJ C;  1OTJ A;  4FFA A;  4M2I A;  2WBP A;  4BGK A;  2OG5 A;  3O2G A;  4M2E A;  2WBO A;  4CVY A;  1JR7 A;  4M2G A;  4M2C A;  1NX8 A;  4BG1 A;  1OIJ B;  3MS5 A;  1DRT A; 
#chains in the Genus database with same CATH topology
 2OG6 A;  4OJ8 A;  1DS1 A;  3EAT X;  1YOX A;  3V15 A;  4C8R A;  4BHF A;  2Q4A A;  1VZ4 A;  1DS0 A;  1Y0Z A;  4M27 A;  4BHG A;  1DRY A;  3R1J A;  1VZ5 A;  4M25 A;  4BHI A;  1GVG A;  1OIH A;  4CWD A;  1OII A;  1GQW A;  1OIK A;  4BGM A;  4C5W A;  5HSX A;  3SWT A;  3V17 A;  2R6S A;  4J5I A;  4Y0E A;  5KEU A;  2WBQ A;  1NX4 A;  2OG7 A;  3PVJ A;  4M2F A;  4YLM X;  3N6W A;  1GY9 A;  1OIJ A;  4M26 A;  4NE0 A;  1OS7 A;  5J92 A;  4M23 A;  1OIJ C;  1OTJ A;  4FFA A;  4M2I A;  2WBP A;  4BGK A;  2OG5 A;  3O2G A;  4M2E A;  2WBO A;  4CVY A;  1JR7 A;  4M2G A;  4M2C A;  1NX8 A;  4BG1 A;  1OIJ B;  1PG6 A;  3MS5 A;  1DRT A; 
#chains in the Genus database with same CATH homology
 4OJ8 A;  2CGN A;  4M27 A;  4BHG A;  4JAA A;  4CWD A;  1OII A;  4BGM A;  2WBQ A;  5J92 A;  4FFA A;  3O2G A;  2WBO A;  4AI8 A;  1NX8 A;  1OTJ A;  3MS5 A;  3V15 A;  3EAT X;  4B7E A;  2Q4A A;  4B7K A;  1DS0 A;  1VZ5 A;  3P3N A;  2WA4 A;  2W0X A;  1H2N A;  4Y0E A;  3V17 A;  4M2F A;  2OG7 A;  4YLM X;  4M26 A;  2WBP A;  1MZE A;  3P3P A;  4BG1 A;  2ILM A;  1DRT A;  1DS1 A;  2WA3 A;  1VZ4 A;  1DRY A;  4M25 A;  1YCI A;  5JWP A;  2Y0I A;  5HSX A;  3SWT A;  4Z2W A;  1NX4 A;  3N6W A;  1GY9 A;  4NE0 A;  1OS7 A;  1OIJ C;  1H2L A;  4BGK A;  4M2E A;  4M2G A;  4Z1V A;  4M2C A;  2CGO A;  1OIJ B;  1GQW A;  2OG6 A;  4NR1 A;  4C8R A;  1H2M A;  4BHF A;  1Y0Z A;  3R1J A;  3OD4 A;  4BHI A;  1GVG A;  1OIH A;  1H2K A;  1OIK A;  1IZ3 A;  3KCX A;  4C5W A;  2XUM A;  2R6S A;  4J5I A;  5KEU A;  3PVJ A;  1OIJ A;  4M23 A;  1MZF A;  3KCY A;  4M2I A;  4BIO A;  2OG5 A;  4CVY A;  3D8C A;  1JR7 A;  2YC0 A;  2YDE A; 
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