4OLKA

The chap domain of lysgh15
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
164
structure length
164
Chain Sequence
MAKTQAEINKRLDAYAKGTVDSPYRIKKATSYDPSFGVMEAGAIDADGYYHAQCQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYQQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Endolysin
publication title Structural and Biochemical Characterization Reveals LysGH15 as an Unprecedented "EF-Hand-Like" Calcium-Binding Phage Lysin
doi rcsb
source organism Staphylococcus phage gh15
total genus 45
structure length 164
sequence length 164
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05257 CHAP CHAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1720.10 Alpha Beta Alpha-Beta Complex endopeptidase fold (from Nostoc punctiforme) endopeptidase domain like (from Nostoc punctiforme) 4olkA00
2VPMA 4HZ9A 3S0QA 4FGEA 4LJ1A 4EQAA 4CT3A 4FQBA 2K3AA 2IO8A 2IOAA 2HBWA 2LRJA 3NPFA 4F0WA 3NE0A 2IF6A 3VPJA 3KW0A 3PBCA 4CGKA 3PVQA 3PBIA 3GT2A 3A2ZA 2FG0A 4R0KA 4OLKA 3A2YA 2VOBA 3M1UA 4FGDA 2IO7A 4CSHA 4Q4TA 4F4MA 2IOBA 3H41A 4Q4GX 4HZBA 2XIVA 4EQ8A 2VPSA 4JXBA 2IO9A 4HPEA 2K1GA 2EVRA 4EOBA 4FDYA 4FGIA 4FQAA 3A30A 3O98A 3VPIA 3I86A 4Q4NA 4F0VA
chains in the Genus database with same CATH superfamily
2VPMA 4HZ9A 4HFFA 4FGEA 4J30A 4LJ1A 3S0QA 4EQAA 4CT3A 4FQBA 2K3AA 2IO8A 2IOAA 2HBWA 2LRJA 3NPFA 4F0WA 3NE0A 2IF6A 3VPJA 3KW0A 3PBCA 4CGKA 3PVQA 4JURA 3PBIA 4HFLA 3EBQA 3GT2A 3A2ZA 4J32A 2FG0A 4R0KA 4OLKA 3A2YA 2VOBA 3M1UA 4FGDA 2IO7A 4CSHA 4Q4TA 4F4MA 2IOBA 3H41A 4Q4GX 4HZBA 2XIVA 4EQ8A 2VPSA 2WP7A 4JXBA 2IO9A 4HPEA 2K1GA 2EVRA 4EOBA 4HFKA 4FDYA 4FGIA 4FQAA 3A30A 3O98A 3VPIA 3I86A 4Q4NA 4F0VA
chains in the Genus database with same CATH topology
2VPMA 4HZ9A 3S0QA 4FGEA 4LJ1A 4EQAA 4CT3A 4FQBA 2K3AA 2IO8A 2IOAA 2HBWA 2LRJA 3NPFA 4F0WA 3NE0A 2IF6A 3VPJA 3KW0A 3PBCA 4CGKA 3PVQA 3PBIA 3GT2A 3A2ZA 2FG0A 4R0KA 4OLKA 3A2YA 2VOBA 3M1UA 4FGDA 2IO7A 4CSHA 4Q4TA 4F4MA 2IOBA 3H41A 4Q4GX 4HZBA 2XIVA 4EQ8A 2VPSA 4JXBA 2IO9A 4HPEA 2K1GA 2EVRA 4EOBA 4FDYA 4FGIA 4FQAA 3A30A 3O98A 3VPIA 3I86A 4Q4NA 4F0VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VPM A;  4HZ9 A;  3S0Q A;  4FGE A;  4LJ1 A;  4EQA A;  4CT3 A;  4FQB A;  2K3A A;  2IO8 A;  2IOA A;  2HBW A;  2LRJ A;  3NPF A;  4F0W A;  3NE0 A;  2IF6 A;  3VPJ A;  3KW0 A;  3PBC A;  4CGK A;  3PVQ A;  3PBI A;  3GT2 A;  3A2Z A;  2FG0 A;  4R0K A;  4OLK A;  3A2Y A;  2VOB A;  3M1U A;  4FGD A;  2IO7 A;  4CSH A;  4Q4T A;  4F4M A;  2IOB A;  3H41 A;  4Q4G X;  4HZB A;  2XIV A;  4EQ8 A;  2VPS A;  4JXB A;  2IO9 A;  4HPE A;  2K1G A;  2EVR A;  4EOB A;  4FDY A;  4FGI A;  4FQA A;  3A30 A;  3O98 A;  3VPI A;  3I86 A;  4Q4N A;  4F0V A; 
#chains in the Genus database with same CATH topology
 2VPM A;  4HZ9 A;  4HFF A;  4FGE A;  4J30 A;  4LJ1 A;  3S0Q A;  4EQA A;  4CT3 A;  4FQB A;  2K3A A;  2IO8 A;  2IOA A;  2HBW A;  2LRJ A;  3NPF A;  4F0W A;  3NE0 A;  2IF6 A;  3VPJ A;  3KW0 A;  3PBC A;  4CGK A;  3PVQ A;  4JUR A;  3PBI A;  4HFL A;  3EBQ A;  3GT2 A;  3A2Z A;  4J32 A;  2FG0 A;  4R0K A;  4OLK A;  3A2Y A;  2VOB A;  3M1U A;  4FGD A;  2IO7 A;  4CSH A;  4Q4T A;  4F4M A;  2IOB A;  3H41 A;  4Q4G X;  4HZB A;  2XIV A;  4EQ8 A;  2VPS A;  2WP7 A;  4JXB A;  2IO9 A;  4HPE A;  2K1G A;  2EVR A;  4EOB A;  4HFK A;  4FDY A;  4FGI A;  4FQA A;  3A30 A;  3O98 A;  3VPI A;  3I86 A;  4Q4N A;  4F0V A; 
#chains in the Genus database with same CATH homology
 2VPM A;  4HZ9 A;  3S0Q A;  4FGE A;  4LJ1 A;  4EQA A;  4CT3 A;  4FQB A;  2K3A A;  2IO8 A;  2IOA A;  2HBW A;  2LRJ A;  3NPF A;  4F0W A;  3NE0 A;  2IF6 A;  3VPJ A;  3KW0 A;  3PBC A;  4CGK A;  3PVQ A;  3PBI A;  3GT2 A;  3A2Z A;  2FG0 A;  4R0K A;  4OLK A;  3A2Y A;  2VOB A;  3M1U A;  4FGD A;  2IO7 A;  4CSH A;  4Q4T A;  4F4M A;  2IOB A;  3H41 A;  4Q4G X;  4HZB A;  2XIV A;  4EQ8 A;  2VPS A;  4JXB A;  2IO9 A;  4HPE A;  2K1G A;  2EVR A;  4EOB A;  4FDY A;  4FGI A;  4FQA A;  3A30 A;  3O98 A;  3VPI A;  3I86 A;  4Q4N A;  4F0V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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