4ON3A

Crystal structure of human sorting nexin 10 (snx10)
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
150
structure length
150
Chain Sequence
EEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMAFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Sorting nexin-10
publication title Structure of human SNX10 reveals insights into its role in human autosomal recessive osteopetrosis.
pubmed doi rcsb
source organism Homo sapiens
total genus 47
structure length 150
sequence length 150
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 4on3A00
2YPSA 1OCSA 2RAKA 1H6HA 1XTEA 4AKVA 1KMDA 4P2IA 4P2JA 2RAIA 2AR5A 3DYTA 4PQOA 1GD5A 4PZGA 4ON3A 4OXWA 1O7KA 2L73A 2V14A 2V6VA 2CSKA 3P0CA 4PQPA 4BGJA 1XTNA 4IKDA 4IKBA 2IWLX 2REAA 2REDA 2CZOA 3FOGA 3HPBA 1OCUA 1KQ6A 2DYBA 2I4KA 2WWEA 3LUIA 4AZ9A 2ETTA 2RAJA 3IQ2A 3HPCX 4IKBB 4HASA
chains in the Genus database with same CATH superfamily
2YPSA 1OCSA 2RAKA 1H6HA 1XTEA 4AKVA 1KMDA 4P2IA 4P2JA 2RAIA 2AR5A 3DYTA 4PQOA 1GD5A 4PZGA 4ON3A 4OXWA 1O7KA 2L73A 2V14A 2V6VA 2CSKA 3P0CA 4PQPA 4BGJA 1XTNA 4IKDA 4IKBA 2IWLX 2REAA 2REDA 2CZOA 3FOGA 3HPBA 1OCUA 1KQ6A 2DYBA 2I4KA 2WWEA 3LUIA 4AZ9A 2ETTA 2RAJA 3IQ2A 3HPCX 4IKBB 4HASA
chains in the Genus database with same CATH topology
2YPSA 1OCSA 2RAKA 1H6HA 1XTEA 4AKVA 1KMDA 4P2IA 4P2JA 2RAIA 2AR5A 3DYTA 4PQOA 1GD5A 4PZGA 4ON3A 4OXWA 1O7KA 2L73A 2V14A 2V6VA 2CSKA 3P0CA 4PQPA 4BGJA 1XTNA 4IKDA 4IKBA 2IWLX 2REAA 2REDA 2CZOA 3FOGA 3HPBA 1OCUA 1KQ6A 2DYBA 2I4KA 2WWEA 3LUIA 4AZ9A 2ETTA 2RAJA 3IQ2A 3HPCX 4IKBB 4HASA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YPS A;  1OCS A;  2RAK A;  1H6H A;  1XTE A;  4AKV A;  1KMD A;  4P2I A;  4P2J A;  2RAI A;  2AR5 A;  3DYT A;  4PQO A;  1GD5 A;  4PZG A;  4ON3 A;  4OXW A;  1O7K A;  2L73 A;  2V14 A;  2V6V A;  2CSK A;  3P0C A;  4PQP A;  4BGJ A;  1XTN A;  4IKD A;  4IKB A;  2IWL X;  2REA A;  2RED A;  2CZO A;  3FOG A;  3HPB A;  1OCU A;  1KQ6 A;  2DYB A;  2I4K A;  2WWE A;  3LUI A;  4AZ9 A;  2ETT A;  2RAJ A;  3IQ2 A;  3HPC X;  4IKB B;  4HAS A; 
#chains in the Genus database with same CATH topology
 2YPS A;  1OCS A;  2RAK A;  1H6H A;  1XTE A;  4AKV A;  1KMD A;  4P2I A;  4P2J A;  2RAI A;  2AR5 A;  3DYT A;  4PQO A;  1GD5 A;  4PZG A;  4ON3 A;  4OXW A;  1O7K A;  2L73 A;  2V14 A;  2V6V A;  2CSK A;  3P0C A;  4PQP A;  4BGJ A;  1XTN A;  4IKD A;  4IKB A;  2IWL X;  2REA A;  2RED A;  2CZO A;  3FOG A;  3HPB A;  1OCU A;  1KQ6 A;  2DYB A;  2I4K A;  2WWE A;  3LUI A;  4AZ9 A;  2ETT A;  2RAJ A;  3IQ2 A;  3HPC X;  4IKB B;  4HAS A; 
#chains in the Genus database with same CATH homology
 2YPS A;  1OCS A;  2RAK A;  1H6H A;  1XTE A;  4AKV A;  1KMD A;  4P2I A;  4P2J A;  2RAI A;  2AR5 A;  3DYT A;  4PQO A;  1GD5 A;  4PZG A;  4ON3 A;  4OXW A;  1O7K A;  2L73 A;  2V14 A;  2V6V A;  2CSK A;  3P0C A;  4PQP A;  4BGJ A;  1XTN A;  4IKD A;  4IKB A;  2IWL X;  2REA A;  2RED A;  2CZO A;  3FOG A;  3HPB A;  1OCU A;  1KQ6 A;  2DYB A;  2I4K A;  2WWE A;  3LUI A;  4AZ9 A;  2ETT A;  2RAJ A;  3IQ2 A;  3HPC X;  4IKB B;  4HAS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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