4OTTA

Crystal structure of the gamma-glutamyltranspeptidase from bacillus licheniformis.
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
357
structure length
357
Chain Sequence
DKVAVGKDGMVATAHPLASKIGAEVLKKGGNAIDAAIAIQYALNVTEPMMSGIGGGGFMMVYDGETKETSIINSRERAPEGAKPDMFLDEDGKVIPFSERSRHGNAVGVPGTLKGLEAAHKKWGTKKMEDLISPSIKLTEEGFPIDSVLADAIKDHQDKLSKTAAKDIFLPDGEPLKEGDILVQKDMAKTFKLIRKEGSKAFYDGEIGRAIADVVQDFGGSMTPDDLSRYEVTTDKPIWGEYHGYDIASMPPPSSGGVFMLQMLKLIDDFHLSQYDPKSFEKYHLLAETMHLSYADRAAYAGDPEFVDVPLRGLLDPDYIKERQKLISLDSMNRDVKEGDPWKYEEGEPNYEIVPQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Gamma glutamyl transpeptidase
publication title Low resolution X-ray structure of gamma-glutamyltranspeptidase from Bacillus licheniformis: Opened active site cleft and a cluster of acid residues potentially involved in the recognition of a metal ion.
pubmed doi rcsb
source organism Bacillus licheniformis
total genus 91
structure length 357
sequence length 357
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2014-02-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4ottA02
4GDXA 4Z9OA 2Z8IA 4ZBKA 2V36A 3WHRA 2QMCA 2Z8KA 2Z8JA 4ZCGA 4OTUA 5B5TA 3FNMA 4ZC6A 4OTTA 4GG2A 2DBWA 2E0XA 2NQOA 5BPKA 2DBXA 2DBUA 2DG5A 2E0YA 3A75A 2QM6A 3WHQA 3WHSA
chains in the Genus database with same CATH superfamily
4F5VA 1E78A 3B9LA 5ID7A 1E7GA 5IIHA 1BM0A 1MIWA 4GDXA 3B9MA 1BKEA 1KW2A 4F5UA 1H5WA 2GUTA 2EFCA 2XW0A 2XW1A 5HOZA 4HGMB 4N0UD 3G9KD 1BJ5A 2BXCA 2EFHA 4WA6B 5FUOA 2BXLA 1UORA 4ZCGA 4OTUA 2BXDA 2I30A 1O9XA 2BXGA 2JUHA 2BXFA 5B5TA 4IW2A 5DQFA 2QHBA 5GIPA 1JNBA 2DBWA 1MIVA 2E0XA 4ZBQA 2DBUA 3LU7A 3H3AA 1FOUA 2DG5A 2BXNA 3A73A 1VZSA 5GHKA 4MBEC 3GQUA 2VUEA 1H9ZA 3M99C 2XSIA 4GDLB 3V03A 4C31B 1TXUA 1MA9A 2BXEA 2LXSA 5IJ5A 3BPJA 4I9OA 4Z9OA 2BXKA 5IIUA 2LXTA 1E7EA 3GQXA 4J2VA 4LB2A 2VUFA 4N3ZA 5DBYA 3NMUA 4F5TA 4LUHA 2Z8KA 5D7GA 2EFDA 1E7BA 3GA9L 1HK5A 2BXBA 3CX9A 2BXOA 3SIVB 4IW1A 2AGHB 4OR0A 2EFEA 4ZC6A 5ID9A 1GNIA 4EMXA 1MUHA 1HK1A 2LOQA 4GG2A 5IJEA 2NQOA 4JK4A 4PO0A 5BPKA 4D7XA 3NVIA 2DBXA 3SIUB 3ECPA 4W4UB 4TQ0A 2E0YA 3NVMA 4S1YA 3W1SA 2XVQA 3A75A 4TQ1A 4HGKA 4M70B 3WHSA 2XVVA 1E7HA 1KXPD 1TF0A 4K71A 1LNSA 2DYOA 2LQHA 4GDKB 3H37A 4G01A 1HK4A 1LOTA 3SQJA 1GNJA 2V36A 3UIVA 3ICXA 3VQIA 3WHRA 2K0NA 2QMCA 4L8UA 5IFOA 2ROHA 3PLAA 3MHSB 2BXIA 3V09A 4K2CA 4OT2A 2XMOA 2BXHA 3TDLA 4ZUXV 1VFIA 1N5UA 3KIKA 2LQIA 3FWBC 1SB0A 4G03A 4FK5B 2BXAA 1E7AA 2KBZA 2XVWA 3JQZA 4G04A 4LA0A 3FWCC 2DYMA 2QM6A 4BKEA 2OZBB 1J78A 1IJGA 2CKXA 2I2ZA 1E7IA 1E7FA 2NNWA 1MM8A 2KWFA 1HA2A 4FJCB 1MIYA 3KJLA 4ZBRA 4BY9C 2VDBA 2Z8IA 4LUFA 2BXPA 4ZBKA 4FIPB 5IJFA 3LU8A 4E99A 4DM0A 1J7EA 3V08A 3NVKA 2BX8A 4Z69A 1KDXA 2Z8JA 4NAWB 2AJEA 5GIOA 3FNMA 4L9KA 1NT2B 4L9QA 2YDFA 1HK3A 4OTTA 1MUSA 1E7CA 3JRYA 4LB9A 2BXQA 1AO6A 5GINA 3WHQA 3MHHB 2BXMA 4N0FD 2XVUA 3LU6A 4F5SA 1HK2A 5IIXA 2OT3A 4DHXB
chains in the Genus database with same CATH topology
4F5VA 1E78A 3B9LA 5ID7A 1E7GA 5IIHA 1BM0A 1MIWA 4GDXA 3B9MA 1BKEA 1KW2A 4F5UA 1H5WA 2EFCA 2XW0A 2XW1A 5HOZA 4HGMB 4N0UD 3G9KD 1BJ5A 2BXCA 2EFHA 4WA6B 5FUOA 2BXLA 1UORA 4ZCGA 4OTUA 2BXDA 2I30A 1O9XA 2BXGA 2JUHA 2BXFA 5B5TA 4IW2A 5DQFA 2QHBA 5GIPA 1JNBA 2DBWA 1MIVA 2E0XA 4ZBQA 2DBUA 3LU7A 3H3AA 1FOUA 2DG5A 2BXNA 3A73A 1VZSA 5GHKA 4MBEC 3GQUA 2VUEA 1H9ZA 3M99C 2XSIA 4GDLB 3V03A 4C31B 1TXUA 1MA9A 2BXEA 5IJ5A 4Z9OA 2BXKA 5IIUA 1E7EA 3GQXA 4J2VA 4LB2A 2VUFA 4N3ZA 5DBYA 3NMUA 4F5TA 4LUHA 2Z8KA 5D7GA 2EFDA 1E7BA 3GA9L 1HK5A 2BXBA 3CX9A 2BXOA 3SIVB 4IW1A 4OR0A 2EFEA 4ZC6A 5ID9A 1GNIA 4EMXA 1HK1A 2LOQA 4GG2A 5IJEA 2NQOA 4JK4A 4PO0A 5BPKA 3NVIA 2DBXA 3SIUB 4W4UB 4TQ0A 2E0YA 3NVMA 4S1YA 3W1SA 2XVQA 3A75A 4TQ1A 4HGKA 4M70B 3WHSA 2XVVA 1E7HA 1KXPD 1TF0A 4K71A 1LNSA 2DYOA 4GDKB 3H37A 4G01A 1HK4A 1LOTA 3SQJA 1GNJA 2V36A 3UIVA 3ICXA 3VQIA 3WHRA 2QMCA 4L8UA 5IFOA 2ROHA 3PLAA 3MHSB 2BXIA 3V09A 4K2CA 4OT2A 2XMOA 2BXHA 3TDLA 4ZUXV 1VFIA 1N5UA 3KIKA 3FWBC 4G03A 4FK5B 2BXAA 1E7AA 2KBZA 2XVWA 3JQZA 4G04A 4LA0A 3FWCC 2DYMA 2QM6A 4BKEA 2OZBB 1J78A 1IJGA 2CKXA 2I2ZA 1E7IA 1E7FA 2NNWA 1HA2A 4FJCB 1MIYA 3KJLA 4ZBRA 4BY9C 2VDBA 2Z8IA 4LUFA 2BXPA 4ZBKA 4FIPB 5IJFA 3LU8A 4E99A 1J7EA 3V08A 3NVKA 2BX8A 4Z69A 2Z8JA 4NAWB 2AJEA 5GIOA 3FNMA 4L9KA 1NT2B 4L9QA 2YDFA 1HK3A 4OTTA 1E7CA 3JRYA 4LB9A 2BXQA 1AO6A 5GINA 3WHQA 3MHHB 2BXMA 4N0FD 2XVUA 3LU6A 4F5SA 1HK2A 5IIXA 2OT3A 4DHXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GDX A;  4Z9O A;  2Z8I A;  4ZBK A;  2V36 A;  3WHR A;  2QMC A;  2Z8K A;  2Z8J A;  4ZCG A;  4OTU A;  5B5T A;  3FNM A;  4ZC6 A;  4OTT A;  4GG2 A;  2DBW A;  2E0X A;  2NQO A;  5BPK A;  2DBX A;  2DBU A;  2DG5 A;  2E0Y A;  3A75 A;  2QM6 A;  3WHQ A;  3WHS A; 
#chains in the Genus database with same CATH topology
 4F5V A;  1E78 A;  3B9L A;  5ID7 A;  1E7G A;  5IIH A;  1BM0 A;  1MIW A;  4GDX A;  3B9M A;  1BKE A;  1KW2 A;  4F5U A;  1H5W A;  2GUT A;  2EFC A;  2XW0 A;  2XW1 A;  5HOZ A;  4HGM B;  4N0U D;  3G9K D;  1BJ5 A;  2BXC A;  2EFH A;  4WA6 B;  5FUO A;  2BXL A;  1UOR A;  4ZCG A;  4OTU A;  2BXD A;  2I30 A;  1O9X A;  2BXG A;  2JUH A;  2BXF A;  5B5T A;  4IW2 A;  5DQF A;  2QHB A;  5GIP A;  1JNB A;  2DBW A;  1MIV A;  2E0X A;  4ZBQ A;  2DBU A;  3LU7 A;  3H3A A;  1FOU A;  2DG5 A;  2BXN A;  3A73 A;  1VZS A;  5GHK A;  4MBE C;  3GQU A;  2VUE A;  1H9Z A;  3M99 C;  2XSI A;  4GDL B;  3V03 A;  4C31 B;  1TXU A;  1MA9 A;  2BXE A;  2LXS A;  5IJ5 A;  3BPJ A;  4I9O A;  4Z9O A;  2BXK A;  5IIU A;  2LXT A;  1E7E A;  3GQX A;  4J2V A;  4LB2 A;  2VUF A;  4N3Z A;  5DBY A;  3NMU A;  4F5T A;  4LUH A;  2Z8K A;  5D7G A;  2EFD A;  1E7B A;  3GA9 L;  1HK5 A;  2BXB A;  3CX9 A;  2BXO A;  3SIV B;  4IW1 A;  2AGH B;  4OR0 A;  2EFE A;  4ZC6 A;  5ID9 A;  1GNI A;  4EMX A;  1MUH A;  1HK1 A;  2LOQ A;  4GG2 A;  5IJE A;  2NQO A;  4JK4 A;  4PO0 A;  5BPK A;  4D7X A;  3NVI A;  2DBX A;  3SIU B;  3ECP A;  4W4U B;  4TQ0 A;  2E0Y A;  3NVM A;  4S1Y A;  3W1S A;  2XVQ A;  3A75 A;  4TQ1 A;  4HGK A;  4M70 B;  3WHS A;  2XVV A;  1E7H A;  1KXP D;  1TF0 A;  4K71 A;  1LNS A;  2DYO A;  2LQH A;  4GDK B;  3H37 A;  4G01 A;  1HK4 A;  1LOT A;  3SQJ A;  1GNJ A;  2V36 A;  3UIV A;  3ICX A;  3VQI A;  3WHR A;  2K0N A;  2QMC A;  4L8U A;  5IFO A;  2ROH A;  3PLA A;  3MHS B;  2BXI A;  3V09 A;  4K2C A;  4OT2 A;  2XMO A;  2BXH A;  3TDL A;  4ZUX V;  1VFI A;  1N5U A;  3KIK A;  2LQI A;  3FWB C;  1SB0 A;  4G03 A;  4FK5 B;  2BXA A;  1E7A A;  2KBZ A;  2XVW A;  3JQZ A;  4G04 A;  4LA0 A;  3FWC C;  2DYM A;  2QM6 A;  4BKE A;  2OZB B;  1J78 A;  1IJG A;  2CKX A;  2I2Z A;  1E7I A;  1E7F A;  2NNW A;  1MM8 A;  2KWF A;  1HA2 A;  4FJC B;  1MIY A;  3KJL A;  4ZBR A;  4BY9 C;  2VDB A;  2Z8I A;  4LUF A;  2BXP A;  4ZBK A;  4FIP B;  5IJF A;  3LU8 A;  4E99 A;  4DM0 A;  1J7E A;  3V08 A;  3NVK A;  2BX8 A;  4Z69 A;  1KDX A;  2Z8J A;  4NAW B;  2AJE A;  5GIO A;  3FNM A;  4L9K A;  1NT2 B;  4L9Q A;  2YDF A;  1HK3 A;  4OTT A;  1MUS A;  1E7C A;  3JRY A;  4LB9 A;  2BXQ A;  1AO6 A;  5GIN A;  3WHQ A;  3MHH B;  2BXM A;  4N0F D;  2XVU A;  3LU6 A;  4F5S A;  1HK2 A;  5IIX A;  2OT3 A;  4DHX B; 
#chains in the Genus database with same CATH homology
 4F5V A;  1E78 A;  3B9L A;  5ID7 A;  1E7G A;  5IIH A;  1BM0 A;  1MIW A;  4GDX A;  3B9M A;  1BKE A;  1KW2 A;  4F5U A;  1H5W A;  2EFC A;  2XW0 A;  2XW1 A;  5HOZ A;  4HGM B;  4N0U D;  3G9K D;  1BJ5 A;  2BXC A;  2EFH A;  4WA6 B;  5FUO A;  2BXL A;  1UOR A;  4ZCG A;  4OTU A;  2BXD A;  2I30 A;  1O9X A;  2BXG A;  2JUH A;  2BXF A;  5B5T A;  4IW2 A;  5DQF A;  2QHB A;  5GIP A;  1JNB A;  2DBW A;  1MIV A;  2E0X A;  4ZBQ A;  2DBU A;  3LU7 A;  3H3A A;  1FOU A;  2DG5 A;  2BXN A;  3A73 A;  1VZS A;  5GHK A;  4MBE C;  3GQU A;  2VUE A;  1H9Z A;  3M99 C;  2XSI A;  4GDL B;  3V03 A;  4C31 B;  1TXU A;  1MA9 A;  2BXE A;  5IJ5 A;  4Z9O A;  2BXK A;  5IIU A;  1E7E A;  3GQX A;  4J2V A;  4LB2 A;  2VUF A;  4N3Z A;  5DBY A;  3NMU A;  4F5T A;  4LUH A;  2Z8K A;  5D7G A;  2EFD A;  1E7B A;  3GA9 L;  1HK5 A;  2BXB A;  3CX9 A;  2BXO A;  3SIV B;  4IW1 A;  4OR0 A;  2EFE A;  4ZC6 A;  5ID9 A;  1GNI A;  4EMX A;  1HK1 A;  2LOQ A;  4GG2 A;  5IJE A;  2NQO A;  4JK4 A;  4PO0 A;  5BPK A;  3NVI A;  2DBX A;  3SIU B;  4W4U B;  4TQ0 A;  2E0Y A;  3NVM A;  4S1Y A;  3W1S A;  2XVQ A;  3A75 A;  4TQ1 A;  4HGK A;  4M70 B;  3WHS A;  2XVV A;  1E7H A;  1KXP D;  1TF0 A;  4K71 A;  1LNS A;  2DYO A;  4GDK B;  3H37 A;  4G01 A;  1HK4 A;  1LOT A;  3SQJ A;  1GNJ A;  2V36 A;  3UIV A;  3ICX A;  3VQI A;  3WHR A;  2QMC A;  4L8U A;  5IFO A;  2ROH A;  3PLA A;  3MHS B;  2BXI A;  3V09 A;  4K2C A;  4OT2 A;  2XMO A;  2BXH A;  3TDL A;  4ZUX V;  1VFI A;  1N5U A;  3KIK A;  3FWB C;  4G03 A;  4FK5 B;  2BXA A;  1E7A A;  2KBZ A;  2XVW A;  3JQZ A;  4G04 A;  4LA0 A;  3FWC C;  2DYM A;  2QM6 A;  4BKE A;  2OZB B;  1J78 A;  1IJG A;  2CKX A;  2I2Z A;  1E7I A;  1E7F A;  2NNW A;  1HA2 A;  4FJC B;  1MIY A;  3KJL A;  4ZBR A;  4BY9 C;  2VDB A;  2Z8I A;  4LUF A;  2BXP A;  4ZBK A;  4FIP B;  5IJF A;  3LU8 A;  4E99 A;  1J7E A;  3V08 A;  3NVK A;  2BX8 A;  4Z69 A;  2Z8J A;  4NAW B;  2AJE A;  5GIO A;  3FNM A;  4L9K A;  1NT2 B;  4L9Q A;  2YDF A;  1HK3 A;  4OTT A;  1E7C A;  3JRY A;  4LB9 A;  2BXQ A;  1AO6 A;  5GIN A;  3WHQ A;  3MHH B;  2BXM A;  4N0F D;  2XVU A;  3LU6 A;  4F5S A;  1HK2 A;  5IIX A;  2OT3 A;  4DHX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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