4OTUA

Crystal structure of the gamma-glutamyltranspeptidase from bacillus licheniformis in complex with l-glutamate
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
363
structure length
363
Chain Sequence
DKVAVGKDGMVATAHPLASKIGAEVLKKGGNAIDAAIAIQYALNVTEPMMSGIGGGGFMMVYDGETKETSIINSRERAPEGAKPDMFLDEDGKVIPFSERSRHGNAVGVPGTLKGLEAAHKKWGTKKMEDLISPSIKLTEEGFPIDSVLADAIKDHQDKLSKTAAKDIFLPDGEPLKEGDILVQKDMAKTFKLIRKEGSKAFYDGEIGRAIADVVQDFGGSMTPDDLSRYEVTTDKPIWGEYHGYDIASMPPPSSGGVFMLQMLKLIDDFHLSQYDPKSFEKYHLLAETMHLSYADRAAYAGDPEFVDVPLRGLLDPDYIKERQKLISLDSMNRDVKEGDPWKYEEGEPNYEIVPQPEDKTIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Gamma glutamyl transpeptidase
publication title Low resolution X-ray structure of gamma-glutamyltranspeptidase from Bacillus licheniformis: Opened active site cleft and a cluster of acid residues potentially involved in the recognition of a metal ion.
pubmed doi rcsb
source organism Bacillus licheniformis
total genus 91
structure length 363
sequence length 363
ec nomenclature ec 2.3.2.2: Gamma-glutamyltransferase.
pdb deposition date 2014-02-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.130 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Serum Albumin; Chain A, Domain 1 4otuA02
2E0YA 2Z8JA 4ZBKA 3WHRA 2QM6A 4GDXA 3A75A 4ZC6A 4Z9OA 2Z8KA 2E0XA 2DBXA 4ZCGA 4GG2A 4OTUA 2DBWA 2QMCA 2DG5A 5BPKA 3FNMA 4OTTA 2DBUA 3WHSA 2NQOA 5B5TA 2Z8IA 3WHQA 2V36A
chains in the Genus database with same CATH superfamily
4PO0A 2EFDA 3FWCC 4ZBKA 3WHRA 2XW0A 3A73A 4EMXA 1J7EA 1BKEA 1MUHA 2I2ZA 4Z9OA 1SB0A 1MIVA 3MHHB 4HGKA 4N0UD 2E0XA 3V09A 1HK5A 5ID7A 2I30A 3BPJA 1JNBA 3GA9L 4LA0A 1H5WA 2BXHA 2EFEA 2ROHA 4LUFA 2BXMA 4M70B 3NVIA 5ID9A 2LOQA 4ZUXV 2VDBA 4FK5B 5GHKA 5DQFA 3V03A 2K0NA 2VUEA 4L9KA 3SQJA 2BXKA 2LXSA 2XMOA 2XVUA 4NAWB 4LB2A 3GQUA 2Z8IA 3JQZA 2BXBA 3TDLA 1MA9A 1E7HA 1E7BA 5IJFA 1MIYA 2AJEA 5IJ5A 2LQIA 1TF0A 3LU7A 4WA6B 2QHBA 2LQHA 2BXFA 3G9KD 4FIPB 4HGMB 4GDXA 3A75A 1BJ5A 2OZBB 3NVKA 4J2VA 1HA2A 1IJGA 2JUHA 3JRYA 3KJLA 1MIWA 1TXUA 2DBXA 2GUTA 2BXGA 4OTUA 2BXNA 4G01A 3W1SA 3SIUB 2QMCA 1E7AA 4MBEC 4FJCB 3B9MA 5B5TA 1E78A 1NT2B 4OT2A 2BXDA 2DBUA 5GIOA 3VQIA 2BXAA 5IIHA 4N0FD 1VFIA 2KBZA 3KIKA 3PLAA 4G03A 3CX9A 3GQXA 4E99A 1BM0A 1E7GA 4L8UA 4TQ1A 3WHQA 2E0YA 2EFCA 4Z69A 2NNWA 1E7IA 5IIXA 1HK1A 1GNIA 2OT3A 1HK4A 2QM6A 4DHXB 3ICXA 4ZC6A 2DYOA 3NVMA 2XVQA 2XVVA 2KWFA 3M99C 1E7FA 1E7EA 2Z8KA 5IJEA 1KDXA 5D7GA 1FOUA 4C31B 4LUHA 5FUOA 1MM8A 3SIVB 4BKEA 4ZBRA 2YDFA 2BXIA 4F5VA 3B9LA 5BPKA 1N5UA 1J78A 3LU8A 4K71A 1KW2A 1H9ZA 1KXPD 3WHSA 4GDKB 3LU6A 5GINA 1MUSA 1GNJA 4L9QA 5IFOA 3H3AA 2BXCA 4TQ0A 2XVWA 2XW1A 3UIVA 4I9OA 3MHSB 2Z8JA 3V08A 3NMUA 4GDLB 1UORA 1AO6A 5HOZA 1O9XA 2CKXA 4W4UB 4S1YA 1LNSA 4ZBQA 2BXOA 2BX8A 2DYMA 1HK2A 2VUFA 4OR0A 5DBYA 2EFHA 4ZCGA 2BXLA 1E7CA 4GG2A 5GIPA 4IW2A 1VZSA 2BXQA 2DBWA 4LB9A 4IW1A 3ECPA 4N3ZA 4F5SA 2DG5A 5IIUA 3FNMA 2BXPA 2AGHB 3FWBC 4F5TA 4OTTA 4F5UA 4JK4A 1HK3A 2NQOA 1LOTA 4DM0A 4BY9C 2LXTA 4D7XA 2XSIA 4K2CA 3H37A 2BXEA 4G04A 2V36A
chains in the Genus database with same CATH topology
4PO0A 2EFDA 3FWCC 4ZBKA 3WHRA 2XW0A 3A73A 4EMXA 1J7EA 1BKEA 2I2ZA 4Z9OA 3MHHB 1MIVA 4HGKA 4N0UD 2E0XA 3V09A 1HK5A 5ID7A 2I30A 1JNBA 3GA9L 4LA0A 1H5WA 2BXHA 2EFEA 2ROHA 4LUFA 2BXMA 4M70B 3NVIA 5ID9A 2LOQA 4ZUXV 2VDBA 4FK5B 5GHKA 5DQFA 3V03A 2VUEA 4L9KA 3SQJA 2BXKA 2XMOA 2XVUA 3TDLA 4NAWB 4LB2A 3GQUA 2Z8IA 3JQZA 2BXBA 1MA9A 1E7HA 1E7BA 5IJFA 1MIYA 2AJEA 5IJ5A 3LU7A 1TF0A 4WA6B 2QHBA 2BXFA 3G9KD 4FIPB 4HGMB 4GDXA 3A75A 1BJ5A 2OZBB 3NVKA 4J2VA 1HA2A 1IJGA 2JUHA 3JRYA 3KJLA 1MIWA 1TXUA 2DBXA 2BXGA 4OTUA 2BXNA 4G01A 3W1SA 3SIUB 2QMCA 1E7AA 4MBEC 4FJCB 3B9MA 5B5TA 1E78A 1NT2B 4OT2A 2BXDA 2DBUA 5GIOA 3VQIA 2BXAA 5IIHA 4N0FD 1VFIA 2KBZA 3KIKA 3PLAA 4G03A 3CX9A 3GQXA 4E99A 1BM0A 1E7GA 4L8UA 4TQ1A 3WHQA 2E0YA 2EFCA 4Z69A 2NNWA 1E7IA 5IIXA 1HK1A 1GNIA 2OT3A 1HK4A 2QM6A 4DHXB 3ICXA 4ZC6A 2DYOA 3NVMA 2XVQA 2XVVA 3M99C 1E7FA 1E7EA 2Z8KA 5IJEA 5D7GA 1FOUA 4C31B 4LUHA 5FUOA 3SIVB 4BKEA 4ZBRA 2YDFA 2BXIA 4F5VA 3B9LA 5BPKA 1N5UA 1J78A 3LU8A 4K71A 1KW2A 1H9ZA 1KXPD 3WHSA 4GDKB 3LU6A 5GINA 1GNJA 4L9QA 5IFOA 3H3AA 2BXCA 4TQ0A 2XVWA 2XW1A 3UIVA 3MHSB 2Z8JA 3V08A 3NMUA 4GDLB 1UORA 1AO6A 5HOZA 1O9XA 2CKXA 4W4UB 4S1YA 1LNSA 4ZBQA 2BXOA 2BX8A 2DYMA 1HK2A 2VUFA 4OR0A 5DBYA 2EFHA 4ZCGA 2BXLA 1E7CA 4GG2A 5GIPA 4IW2A 1VZSA 2BXQA 2DBWA 4LB9A 4IW1A 4N3ZA 4F5SA 2DG5A 5IIUA 3FNMA 2BXPA 3FWBC 4F5TA 4OTTA 4F5UA 4JK4A 1HK3A 2NQOA 1LOTA 4BY9C 2XSIA 4K2CA 3H37A 2BXEA 4G04A 2V36A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E0Y A;  2Z8J A;  4ZBK A;  3WHR A;  2QM6 A;  4GDX A;  3A75 A;  4ZC6 A;  4Z9O A;  2Z8K A;  2E0X A;  2DBX A;  4ZCG A;  4GG2 A;  4OTU A;  2DBW A;  2QMC A;  2DG5 A;  5BPK A;  3FNM A;  4OTT A;  2DBU A;  3WHS A;  2NQO A;  5B5T A;  2Z8I A;  3WHQ A;  2V36 A; 
#chains in the Genus database with same CATH topology
 4PO0 A;  2EFD A;  3FWC C;  4ZBK A;  3WHR A;  2XW0 A;  3A73 A;  4EMX A;  1J7E A;  1BKE A;  1MUH A;  2I2Z A;  4Z9O A;  1SB0 A;  1MIV A;  3MHH B;  4HGK A;  4N0U D;  2E0X A;  3V09 A;  1HK5 A;  5ID7 A;  2I30 A;  3BPJ A;  1JNB A;  3GA9 L;  4LA0 A;  1H5W A;  2BXH A;  2EFE A;  2ROH A;  4LUF A;  2BXM A;  4M70 B;  3NVI A;  5ID9 A;  2LOQ A;  4ZUX V;  2VDB A;  4FK5 B;  5GHK A;  5DQF A;  3V03 A;  2K0N A;  2VUE A;  4L9K A;  3SQJ A;  2BXK A;  2LXS A;  2XMO A;  2XVU A;  4NAW B;  4LB2 A;  3GQU A;  2Z8I A;  3JQZ A;  2BXB A;  3TDL A;  1MA9 A;  1E7H A;  1E7B A;  5IJF A;  1MIY A;  2AJE A;  5IJ5 A;  2LQI A;  1TF0 A;  3LU7 A;  4WA6 B;  2QHB A;  2LQH A;  2BXF A;  3G9K D;  4FIP B;  4HGM B;  4GDX A;  3A75 A;  1BJ5 A;  2OZB B;  3NVK A;  4J2V A;  1HA2 A;  1IJG A;  2JUH A;  3JRY A;  3KJL A;  1MIW A;  1TXU A;  2DBX A;  2GUT A;  2BXG A;  4OTU A;  2BXN A;  4G01 A;  3W1S A;  3SIU B;  2QMC A;  1E7A A;  4MBE C;  4FJC B;  3B9M A;  5B5T A;  1E78 A;  1NT2 B;  4OT2 A;  2BXD A;  2DBU A;  5GIO A;  3VQI A;  2BXA A;  5IIH A;  4N0F D;  1VFI A;  2KBZ A;  3KIK A;  3PLA A;  4G03 A;  3CX9 A;  3GQX A;  4E99 A;  1BM0 A;  1E7G A;  4L8U A;  4TQ1 A;  3WHQ A;  2E0Y A;  2EFC A;  4Z69 A;  2NNW A;  1E7I A;  5IIX A;  1HK1 A;  1GNI A;  2OT3 A;  1HK4 A;  2QM6 A;  4DHX B;  3ICX A;  4ZC6 A;  2DYO A;  3NVM A;  2XVQ A;  2XVV A;  2KWF A;  3M99 C;  1E7F A;  1E7E A;  2Z8K A;  5IJE A;  1KDX A;  5D7G A;  1FOU A;  4C31 B;  4LUH A;  5FUO A;  1MM8 A;  3SIV B;  4BKE A;  4ZBR A;  2YDF A;  2BXI A;  4F5V A;  3B9L A;  5BPK A;  1N5U A;  1J78 A;  3LU8 A;  4K71 A;  1KW2 A;  1H9Z A;  1KXP D;  3WHS A;  4GDK B;  3LU6 A;  5GIN A;  1MUS A;  1GNJ A;  4L9Q A;  5IFO A;  3H3A A;  2BXC A;  4TQ0 A;  2XVW A;  2XW1 A;  3UIV A;  4I9O A;  3MHS B;  2Z8J A;  3V08 A;  3NMU A;  4GDL B;  1UOR A;  1AO6 A;  5HOZ A;  1O9X A;  2CKX A;  4W4U B;  4S1Y A;  1LNS A;  4ZBQ A;  2BXO A;  2BX8 A;  2DYM A;  1HK2 A;  2VUF A;  4OR0 A;  5DBY A;  2EFH A;  4ZCG A;  2BXL A;  1E7C A;  4GG2 A;  5GIP A;  4IW2 A;  1VZS A;  2BXQ A;  2DBW A;  4LB9 A;  4IW1 A;  3ECP A;  4N3Z A;  4F5S A;  2DG5 A;  5IIU A;  3FNM A;  2BXP A;  2AGH B;  3FWB C;  4F5T A;  4OTT A;  4F5U A;  4JK4 A;  1HK3 A;  2NQO A;  1LOT A;  4DM0 A;  4BY9 C;  2LXT A;  4D7X A;  2XSI A;  4K2C A;  3H37 A;  2BXE A;  4G04 A;  2V36 A; 
#chains in the Genus database with same CATH homology
 4PO0 A;  2EFD A;  3FWC C;  4ZBK A;  3WHR A;  2XW0 A;  3A73 A;  4EMX A;  1J7E A;  1BKE A;  2I2Z A;  4Z9O A;  3MHH B;  1MIV A;  4HGK A;  4N0U D;  2E0X A;  3V09 A;  1HK5 A;  5ID7 A;  2I30 A;  1JNB A;  3GA9 L;  4LA0 A;  1H5W A;  2BXH A;  2EFE A;  2ROH A;  4LUF A;  2BXM A;  4M70 B;  3NVI A;  5ID9 A;  2LOQ A;  4ZUX V;  2VDB A;  4FK5 B;  5GHK A;  5DQF A;  3V03 A;  2VUE A;  4L9K A;  3SQJ A;  2BXK A;  2XMO A;  2XVU A;  3TDL A;  4NAW B;  4LB2 A;  3GQU A;  2Z8I A;  3JQZ A;  2BXB A;  1MA9 A;  1E7H A;  1E7B A;  5IJF A;  1MIY A;  2AJE A;  5IJ5 A;  3LU7 A;  1TF0 A;  4WA6 B;  2QHB A;  2BXF A;  3G9K D;  4FIP B;  4HGM B;  4GDX A;  3A75 A;  1BJ5 A;  2OZB B;  3NVK A;  4J2V A;  1HA2 A;  1IJG A;  2JUH A;  3JRY A;  3KJL A;  1MIW A;  1TXU A;  2DBX A;  2BXG A;  4OTU A;  2BXN A;  4G01 A;  3W1S A;  3SIU B;  2QMC A;  1E7A A;  4MBE C;  4FJC B;  3B9M A;  5B5T A;  1E78 A;  1NT2 B;  4OT2 A;  2BXD A;  2DBU A;  5GIO A;  3VQI A;  2BXA A;  5IIH A;  4N0F D;  1VFI A;  2KBZ A;  3KIK A;  3PLA A;  4G03 A;  3CX9 A;  3GQX A;  4E99 A;  1BM0 A;  1E7G A;  4L8U A;  4TQ1 A;  3WHQ A;  2E0Y A;  2EFC A;  4Z69 A;  2NNW A;  1E7I A;  5IIX A;  1HK1 A;  1GNI A;  2OT3 A;  1HK4 A;  2QM6 A;  4DHX B;  3ICX A;  4ZC6 A;  2DYO A;  3NVM A;  2XVQ A;  2XVV A;  3M99 C;  1E7F A;  1E7E A;  2Z8K A;  5IJE A;  5D7G A;  1FOU A;  4C31 B;  4LUH A;  5FUO A;  3SIV B;  4BKE A;  4ZBR A;  2YDF A;  2BXI A;  4F5V A;  3B9L A;  5BPK A;  1N5U A;  1J78 A;  3LU8 A;  4K71 A;  1KW2 A;  1H9Z A;  1KXP D;  3WHS A;  4GDK B;  3LU6 A;  5GIN A;  1GNJ A;  4L9Q A;  5IFO A;  3H3A A;  2BXC A;  4TQ0 A;  2XVW A;  2XW1 A;  3UIV A;  3MHS B;  2Z8J A;  3V08 A;  3NMU A;  4GDL B;  1UOR A;  1AO6 A;  5HOZ A;  1O9X A;  2CKX A;  4W4U B;  4S1Y A;  1LNS A;  4ZBQ A;  2BXO A;  2BX8 A;  2DYM A;  1HK2 A;  2VUF A;  4OR0 A;  5DBY A;  2EFH A;  4ZCG A;  2BXL A;  1E7C A;  4GG2 A;  5GIP A;  4IW2 A;  1VZS A;  2BXQ A;  2DBW A;  4LB9 A;  4IW1 A;  4N3Z A;  4F5S A;  2DG5 A;  5IIU A;  3FNM A;  2BXP A;  3FWB C;  4F5T A;  4OTT A;  4F5U A;  4JK4 A;  1HK3 A;  2NQO A;  1LOT A;  4BY9 C;  2XSI A;  4K2C A;  3H37 A;  2BXE A;  4G04 A;  2V36 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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