4OWPA

Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of the proteosome lid.
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
177
structure length
170
Chain Sequence
SLQHEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGGLPTDAYVAIEQVTEKTFLHLPCTIEAEEAEEIGVEHLLRDV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords 26S proteasome regulatory subunit RPN8
publication title Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of the proteosome lid. In preparation.
rcsb
source organism Saccharomyces cerevisiae
total genus 46
structure length 170
sequence length 177
ec nomenclature
pdb deposition date 2014-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01398 JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 4owpA00
4ZFRA 4P9DA 5M59B 2HVWA 4OCNB 3ZPGA 4OCLA 4MSMA 1CTTA 4MSQA 2KCQA 1P6OA 2O95A 1UX0A 4NQLA 1R5TA 4P9CA 1VQ2A 2HVVA 1ALNA 4ZD4A 4MS7A 4OWPA 4K1RA 4WIFA 2G84A 4WIGA 4LCNA 3SBGA 2D5NA 2D30A 4KITC 2OG4A 2Z3GA 2Z3JA 1CTUA 1UWZA 1YSDA 2FR6A 1TIYA 4O8YA 4P9EA 2NX8A 4ILGC 2P8RA 4F3WA 4HRWA 2OBCA 4OCMA 2QLCA 4QFTA 4OCLB 3DMOA 2B3JA 1AF2A 4O8XA 2HXVA 2KKSA 4LD2A 2O3KA 2W4LA 1ZABA 5M52C 1UAQA 2PW9A 3RZUA 5CW6A 4JXEA 4LCPA 4I43B 4F7OA 1OI0A 1YSBA 3IJFX 4MSJA 2NYTA 2A8NA 2ZNRA 2Z3HA 3OJ6A 1MQ0A 4BGDC 4OWPB 3G8QA 4G3MA 4PQTA 2FR5A 5DCAJ 1WN6A 5C2OA 4EG2A 2ZNVA 1WN5A 3DH1A 4E0QA 3R2NA 2P87A 3MPZA 3RZVA 1JTKA 4LD4A 3EX8A 1WWRA 2G6VA 3B8FA 4ZFTA 4O8YB 2RPZA 3ZEFB 4OCMB 4LCOA 4OCNA 2Z3IA 5GAOA 1Z3AA 1OX7A 1UX1A 4ZD5A 3ZPCA 1WKQA 4O8XB 1R5XA 2O7PA 4D10F 1RB7A 3OCQA 4HRQA 2O96A 2B3ZA 4LC5A 3E1UA 4MSDA
chains in the Genus database with same CATH superfamily
4ZFRA 4P9DA 5M59B 2HVWA 4OCNB 3ZPGA 4OCLA 4MSMA 1CTTA 4MSQA 4EHIA 2KCQA 1P6OA 2O95A 1UX0A 1ZCZA 4NQLA 1R5TA 3BH1A 1OZ0A 4P9CA 1VQ2A 2HVVA 4J6EA 1VK9A 2B1GA 1ALNA 4ZD4A 4MS7A 4OWPA 4K1RA 4WIFA 2G84A 4WIGA 4LCNA 3SBGA 2D5NA 2D30A 4KITC 2OG4A 2Z3GA 2Z3JA 1CTUA 1UWZA 1YSDA 2FR6A 1TIYA 4O8YA 4P9EA 1THZA 2NX8A 3ZZMA 4ILGC 2P8RA 4F3WA 4HRWA 2OBCA 4OCMA 2QLCA 1G8MA 4QFTA 4OCLB 3DMOA 2B3JA 1AF2A 4O8XA 2HXVA 2KKSA 4LD2A 2IU0A 2O3KA 2W4LA 1ZABA 5M52C 1UAQA 2PW9A 1PL0A 3RZUA 5CW6A 4JXEA 4LCPA 4I43B 4F7OA 4GGMX 1OI0A 1YSBA 3IJFX 4MSJA 2NYTA 2A8NA 2ZNRA 2Z3HA 2IU3A 3OJ6A 1MQ0A 4BGDC 4OWPB 3G8QA 4G3MA 4PQTA 2FR5A 5DCAJ 1WN6A 5C2OA 4EG2A 2ZNVA 1WN5A 3DH1A 4E0QA 3R2NA 2P87A 3MPZA 3RZVA 1JTKA 4LD4A 3EX8A 1WWRA 2G6VA 3B8FA 4ZFTA 4O8YB 1P4RA 2RPZA 3ZEFB 4OCMB 4LCOA 2B1IA 1PKXA 2Z3IA 4OCNA 3VX8A 4A1OA 5GAOA 1M9NA 1Z3AA 1OX7A 1UX1A 4ZD5A 3ZPCA 1WKQA 4O8XB 1R5XA 2O7PA 4D10F 1RB7A 3OCQA 4HRQA 2O96A 2B3ZA 4LC5A 3E1UA 4MSDA
chains in the Genus database with same CATH topology
4ZFRA 4P9DA 5M59B 2HVWA 4OCNB 3ZPGA 4OCLA 4MSMA 1CTTA 4MSQA 2KCQA 1P6OA 2O95A 1UX0A 4NQLA 1R5TA 4P9CA 1VQ2A 2HVVA 1ALNA 4ZD4A 4MS7A 4OWPA 4K1RA 4WIFA 2G84A 4WIGA 4LCNA 3SBGA 2D5NA 2D30A 4KITC 2OG4A 2Z3GA 2Z3JA 1CTUA 1UWZA 1YSDA 2FR6A 1TIYA 4O8YA 4P9EA 2NX8A 4ILGC 2P8RA 4F3WA 4HRWA 2OBCA 4OCMA 2QLCA 4QFTA 4OCLB 3DMOA 2B3JA 1AF2A 4O8XA 2HXVA 2KKSA 4LD2A 2O3KA 2W4LA 1ZABA 5M52C 1UAQA 2PW9A 3RZUA 5CW6A 4JXEA 4LCPA 4I43B 4F7OA 1OI0A 1YSBA 3IJFX 4MSJA 2NYTA 2A8NA 2ZNRA 2Z3HA 3OJ6A 1MQ0A 4BGDC 4OWPB 3G8QA 4G3MA 4PQTA 2FR5A 5DCAJ 1WN6A 5C2OA 4EG2A 2ZNVA 1WN5A 3DH1A 4E0QA 3R2NA 2P87A 3MPZA 3RZVA 1JTKA 4LD4A 3EX8A 1WWRA 2G6VA 3B8FA 4ZFTA 4O8YB 2RPZA 3ZEFB 4OCMB 4LCOA 4OCNA 2Z3IA 5GAOA 1Z3AA 1OX7A 1UX1A 4ZD5A 3ZPCA 1WKQA 4O8XB 1R5XA 2O7PA 4D10F 1RB7A 3OCQA 4HRQA 2O96A 2B3ZA 4LC5A 3E1UA 4MSDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZFR A;  4P9D A;  5M59 B;  2HVW A;  4OCN B;  3ZPG A;  4OCL A;  4MSM A;  1CTT A;  4MSQ A;  2KCQ A;  1P6O A;  2O95 A;  1UX0 A;  4NQL A;  1R5T A;  4P9C A;  1VQ2 A;  2HVV A;  1ALN A;  4ZD4 A;  4MS7 A;  4OWP A;  4K1R A;  4WIF A;  2G84 A;  4WIG A;  4LCN A;  3SBG A;  2D5N A;  2D30 A;  4KIT C;  2OG4 A;  2Z3G A;  2Z3J A;  1CTU A;  1UWZ A;  1YSD A;  2FR6 A;  1TIY A;  4O8Y A;  4P9E A;  2NX8 A;  4ILG C;  2P8R A;  4F3W A;  4HRW A;  2OBC A;  4OCM A;  2QLC A;  4QFT A;  4OCL B;  3DMO A;  2B3J A;  1AF2 A;  4O8X A;  2HXV A;  2KKS A;  4LD2 A;  2O3K A;  2W4L A;  1ZAB A;  5M52 C;  1UAQ A;  2PW9 A;  3RZU A;  5CW6 A;  4JXE A;  4LCP A;  4I43 B;  4F7O A;  1OI0 A;  1YSB A;  3IJF X;  4MSJ A;  2NYT A;  2A8N A;  2ZNR A;  2Z3H A;  3OJ6 A;  1MQ0 A;  4BGD C;  4OWP B;  3G8Q A;  4G3M A;  4PQT A;  2FR5 A;  5DCA J;  1WN6 A;  5C2O A;  4EG2 A;  2ZNV A;  1WN5 A;  3DH1 A;  4E0Q A;  3R2N A;  2P87 A;  3MPZ A;  3RZV A;  1JTK A;  4LD4 A;  3EX8 A;  1WWR A;  2G6V A;  3B8F A;  4ZFT A;  4O8Y B;  2RPZ A;  3ZEF B;  4OCM B;  4LCO A;  4OCN A;  2Z3I A;  5GAO A;  1Z3A A;  1OX7 A;  1UX1 A;  4ZD5 A;  3ZPC A;  1WKQ A;  4O8X B;  1R5X A;  2O7P A;  4D10 F;  1RB7 A;  3OCQ A;  4HRQ A;  2O96 A;  2B3Z A;  4LC5 A;  3E1U A;  4MSD A; 
#chains in the Genus database with same CATH topology
 4ZFR A;  4P9D A;  5M59 B;  2HVW A;  4OCN B;  3ZPG A;  4OCL A;  4MSM A;  1CTT A;  4MSQ A;  4EHI A;  2KCQ A;  1P6O A;  2O95 A;  1UX0 A;  1ZCZ A;  4NQL A;  1R5T A;  3BH1 A;  1OZ0 A;  4P9C A;  1VQ2 A;  2HVV A;  4J6E A;  1VK9 A;  2B1G A;  1ALN A;  4ZD4 A;  4MS7 A;  4OWP A;  4K1R A;  4WIF A;  2G84 A;  4WIG A;  4LCN A;  3SBG A;  2D5N A;  2D30 A;  4KIT C;  2OG4 A;  2Z3G A;  2Z3J A;  1CTU A;  1UWZ A;  1YSD A;  2FR6 A;  1TIY A;  4O8Y A;  4P9E A;  1THZ A;  2NX8 A;  3ZZM A;  4ILG C;  2P8R A;  4F3W A;  4HRW A;  2OBC A;  4OCM A;  2QLC A;  1G8M A;  4QFT A;  4OCL B;  3DMO A;  2B3J A;  1AF2 A;  4O8X A;  2HXV A;  2KKS A;  4LD2 A;  2IU0 A;  2O3K A;  2W4L A;  1ZAB A;  5M52 C;  1UAQ A;  2PW9 A;  1PL0 A;  3RZU A;  5CW6 A;  4JXE A;  4LCP A;  4I43 B;  4F7O A;  4GGM X;  1OI0 A;  1YSB A;  3IJF X;  4MSJ A;  2NYT A;  2A8N A;  2ZNR A;  2Z3H A;  2IU3 A;  3OJ6 A;  1MQ0 A;  4BGD C;  4OWP B;  3G8Q A;  4G3M A;  4PQT A;  2FR5 A;  5DCA J;  1WN6 A;  5C2O A;  4EG2 A;  2ZNV A;  1WN5 A;  3DH1 A;  4E0Q A;  3R2N A;  2P87 A;  3MPZ A;  3RZV A;  1JTK A;  4LD4 A;  3EX8 A;  1WWR A;  2G6V A;  3B8F A;  4ZFT A;  4O8Y B;  1P4R A;  2RPZ A;  3ZEF B;  4OCM B;  4LCO A;  2B1I A;  1PKX A;  2Z3I A;  4OCN A;  3VX8 A;  4A1O A;  5GAO A;  1M9N A;  1Z3A A;  1OX7 A;  1UX1 A;  4ZD5 A;  3ZPC A;  1WKQ A;  4O8X B;  1R5X A;  2O7P A;  4D10 F;  1RB7 A;  3OCQ A;  4HRQ A;  2O96 A;  2B3Z A;  4LC5 A;  3E1U A;  4MSD A; 
#chains in the Genus database with same CATH homology
 4ZFR A;  4P9D A;  5M59 B;  2HVW A;  4OCN B;  3ZPG A;  4OCL A;  4MSM A;  1CTT A;  4MSQ A;  2KCQ A;  1P6O A;  2O95 A;  1UX0 A;  4NQL A;  1R5T A;  4P9C A;  1VQ2 A;  2HVV A;  1ALN A;  4ZD4 A;  4MS7 A;  4OWP A;  4K1R A;  4WIF A;  2G84 A;  4WIG A;  4LCN A;  3SBG A;  2D5N A;  2D30 A;  4KIT C;  2OG4 A;  2Z3G A;  2Z3J A;  1CTU A;  1UWZ A;  1YSD A;  2FR6 A;  1TIY A;  4O8Y A;  4P9E A;  2NX8 A;  4ILG C;  2P8R A;  4F3W A;  4HRW A;  2OBC A;  4OCM A;  2QLC A;  4QFT A;  4OCL B;  3DMO A;  2B3J A;  1AF2 A;  4O8X A;  2HXV A;  2KKS A;  4LD2 A;  2O3K A;  2W4L A;  1ZAB A;  5M52 C;  1UAQ A;  2PW9 A;  3RZU A;  5CW6 A;  4JXE A;  4LCP A;  4I43 B;  4F7O A;  1OI0 A;  1YSB A;  3IJF X;  4MSJ A;  2NYT A;  2A8N A;  2ZNR A;  2Z3H A;  3OJ6 A;  1MQ0 A;  4BGD C;  4OWP B;  3G8Q A;  4G3M A;  4PQT A;  2FR5 A;  5DCA J;  1WN6 A;  5C2O A;  4EG2 A;  2ZNV A;  1WN5 A;  3DH1 A;  4E0Q A;  3R2N A;  2P87 A;  3MPZ A;  3RZV A;  1JTK A;  4LD4 A;  3EX8 A;  1WWR A;  2G6V A;  3B8F A;  4ZFT A;  4O8Y B;  2RPZ A;  3ZEF B;  4OCM B;  4LCO A;  4OCN A;  2Z3I A;  5GAO A;  1Z3A A;  1OX7 A;  1UX1 A;  4ZD5 A;  3ZPC A;  1WKQ A;  4O8X B;  1R5X A;  2O7P A;  4D10 F;  1RB7 A;  3OCQ A;  4HRQ A;  2O96 A;  2B3Z A;  4LC5 A;  3E1U A;  4MSD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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