4OYDA

Crystal structure of a computationally designed inhibitor of an epstein-barr viral bcl-2 protein
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
156
structure length
156
Chain Sequence
SAYSTREILLALCIRDSRVHGNGTLHPVLELAARETPLRLSPEDTVVLRYHVLLEEIIERNSETFTETWNRFITHTEHVDLDFNSVFLEIFHRGDPSLGRALAWMAWCMHACRTLCCNQSTPYYVVDLSVRGMLEASEGLDGWIHQQGGWSTLIED
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/inhibitor
molecule keywords Apoptosis regulator BHRF1
publication title A computationally designed inhibitor of an epstein-barr viral bcl-2 protein induces apoptosis in infected cells.
pubmed doi rcsb
source organism Epstein-barr virus
total genus 56
structure length 156
sequence length 156
chains with identical sequence C
ec nomenclature
pdb deposition date 2014-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 4oydA00
2NLAA 4OYDA 5IEZA 1G5JA 4BPJA 2KUAA 2O2NA 2VOFA 3QBRA 2VOGA 3KJ2A 2MHSA 4HW4A 4MI8A 4S0OA 1TY4A 2VOHA 5C6HA 2YV6A 4HW3A 2JCNA 4YJ4A 2PQKA 5KU9A 4ZIGA 2MEJA 4BD6A 4OQ5A 4ZIEA 5FDOA 4ZBIA 1YSNA 4ZIIA 3ILCA 4QNQA 4ZIFA 1R2EA 4S0PA 4BDUA 1OHUA 4YK9A 1YSWA 4BD8A 2ROCA 1ZY3A 1DDBA 1R2HA 1WSXA 4B4SA 4G35A 2A5YA 1PQ1A 4ZBFA 2B48A 2V6QA 3DVUA 1YSGA 2O22A 5C3FA 1YSIA 3D7VA 2XPXA 1GJHA 3WIYA 1G5MA 4BD7A 3MQPA 2O21A 3KJ0A 3IO9A 3BL2A 4BD2A 3MK8A 2JM6B 4HW2A 4U2UA 2IMTA 1BXLA 2VM6A 3WIXA 3KJ1A 2M5BA 1AF3A 4ZIHA 2VOIA 2RODA 1R2IA 2WH6A 4U2VA 2BIDA 5IF4A 4BPIA 1O0LA 1PQ0A 1Q59A 2ME8A 2IMSA 4QVXA 3KZ0A 2LR1A 1K3KA 4WMRA 3IHCA 3IHEA 2O2MA 3IIGA 3PK1A 4OQ6A 2NL9A 3CVAX 3I1HA 2O2FA 2XA0A 5FC4A 1F16A 4K5BC 5FMIA 2W3LA 4ZEQA 3IHDA 1LXLA 1R2GA 1MAZA 5KTGA 5JSBA 5FDRA 1R2DA 2ABOA 2BZWA 2K7WA 3IIHA 2KBWA 1MK3A
chains in the Genus database with same CATH superfamily
2NLAA 4OYDA 5IEZA 1G5JA 2K36A 4BPJA 2KUAA 2O2NA 2VOFA 3QBRA 2VOGA 3KJ2A 2MHSA 4HW4A 4MI8A 4S0OA 1TY4A 2I39A 2VOHA 5C6HA 2YV6A 4BBBA 4HW3A 2JCNA 4YJ4A 2JBYA 2PQKA 5KU9A 4ZIGA 2O42A 2MEJA 2UXEA 4BD6A 4OQ5A 4ZIEA 5FDOA 4ZBIA 1YSNA 4ZIIA 3ILCA 4QNQA 4ZIFA 1R2EA 4S0PA 4BDUA 1OHUA 4YK9A 1YSWA 4BD8A 2VVWA 2ROCA 1ZY3A 1DDBA 1R2HA 1WSXA 4B4SA 4G35A 2A5YA 1PQ1A 4ZBFA 2B48A 2V6QA 3DVUA 1YSGA 2O22A 5C3FA 1YSIA 3D7VA 2XPXA 2VVXA 1GJHA 3WIYA 1G5MA 4BD7A 3MQPA 2O21A 3KJ0A 3IO9A 3BL2A 4BD2A 3MK8A 4UF3A 2JM6B 4HW2A 4U2UA 2IMTA 1BXLA 2VM6A 3WIXA 3KJ1A 2M5BA 1AF3A 4ZIHA 4LQKA 2VOIA 4M0SA 2RODA 1R2IA 2WH6A 4U2VA 2BIDA 5IF4A 2VVYA 4UF1A 3JRVA 4BPIA 1O0LA 1PQ0A 4D2LA 1Q59A 2ME8A 2IMSA 4QVXA 4BBDA 3KZ0A 4BBCA 2LR1A 1K3KA 4WMRA 2VTYA 3IHCA 3IHEA 2O2MA 3IIGA 3PK1A 4OQ6A 2NL9A 3CVAX 3I1HA 2O2FA 2XA0A 5FC4A 4D2MA 1F16A 4K5BC 5FMIA 2W3LA 4ZEQA 3IHDA 1LXLA 1R2GA 1MAZA 4UF2A 5KTGA 5JSBA 5FDRA 1R2DA 2ABOA 2BZWA 2K7WA 3IIHA 2JBXA 2KBWA 1MK3A
chains in the Genus database with same CATH topology
2NLAA 4OYDA 5IEZA 1G5JA 4BPJA 2KUAA 2O2NA 2VOFA 3QBRA 2VOGA 3KJ2A 2MHSA 4HW4A 4MI8A 4S0OA 1TY4A 2VOHA 5C6HA 2YV6A 4HW3A 2JCNA 4YJ4A 2PQKA 5KU9A 4ZIGA 2MEJA 4BD6A 4OQ5A 4ZIEA 5FDOA 4ZBIA 1YSNA 4ZIIA 3ILCA 4QNQA 4ZIFA 1R2EA 4S0PA 4BDUA 1OHUA 4YK9A 1YSWA 4BD8A 2ROCA 1ZY3A 1DDBA 1R2HA 1WSXA 4B4SA 4G35A 2A5YA 1PQ1A 4ZBFA 2B48A 2V6QA 3DVUA 1YSGA 2O22A 5C3FA 1YSIA 3D7VA 2XPXA 1GJHA 3WIYA 1G5MA 4BD7A 3MQPA 2O21A 3KJ0A 3IO9A 3BL2A 4BD2A 3MK8A 2JM6B 4HW2A 4U2UA 2IMTA 1BXLA 2VM6A 3WIXA 3KJ1A 2M5BA 1AF3A 4ZIHA 2VOIA 2RODA 1R2IA 2WH6A 4U2VA 2BIDA 5IF4A 4BPIA 1O0LA 1PQ0A 1Q59A 2ME8A 2IMSA 4QVXA 3KZ0A 2LR1A 1K3KA 4WMRA 3IHCA 3IHEA 2O2MA 3IIGA 3PK1A 4OQ6A 2NL9A 3CVAX 3I1HA 2O2FA 2XA0A 5FC4A 1F16A 4K5BC 5FMIA 2W3LA 4ZEQA 3IHDA 1LXLA 1R2GA 1MAZA 5KTGA 5JSBA 5FDRA 1R2DA 2ABOA 2BZWA 2K7WA 3IIHA 2KBWA 1MK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NLA A;  4OYD A;  5IEZ A;  1G5J A;  4BPJ A;  2KUA A;  2O2N A;  2VOF A;  3QBR A;  2VOG A;  3KJ2 A;  2MHS A;  4HW4 A;  4MI8 A;  4S0O A;  1TY4 A;  2VOH A;  5C6H A;  2YV6 A;  4HW3 A;  2JCN A;  4YJ4 A;  2PQK A;  5KU9 A;  4ZIG A;  2MEJ A;  4BD6 A;  4OQ5 A;  4ZIE A;  5FDO A;  4ZBI A;  1YSN A;  4ZII A;  3ILC A;  4QNQ A;  4ZIF A;  1R2E A;  4S0P A;  4BDU A;  1OHU A;  4YK9 A;  1YSW A;  4BD8 A;  2ROC A;  1ZY3 A;  1DDB A;  1R2H A;  1WSX A;  4B4S A;  4G35 A;  2A5Y A;  1PQ1 A;  4ZBF A;  2B48 A;  2V6Q A;  3DVU A;  1YSG A;  2O22 A;  5C3F A;  1YSI A;  3D7V A;  2XPX A;  1GJH A;  3WIY A;  1G5M A;  4BD7 A;  3MQP A;  2O21 A;  3KJ0 A;  3IO9 A;  3BL2 A;  4BD2 A;  3MK8 A;  2JM6 B;  4HW2 A;  4U2U A;  2IMT A;  1BXL A;  2VM6 A;  3WIX A;  3KJ1 A;  2M5B A;  1AF3 A;  4ZIH A;  2VOI A;  2ROD A;  1R2I A;  2WH6 A;  4U2V A;  2BID A;  5IF4 A;  4BPI A;  1O0L A;  1PQ0 A;  1Q59 A;  2ME8 A;  2IMS A;  4QVX A;  3KZ0 A;  2LR1 A;  1K3K A;  4WMR A;  3IHC A;  3IHE A;  2O2M A;  3IIG A;  3PK1 A;  4OQ6 A;  2NL9 A;  3CVA X;  3I1H A;  2O2F A;  2XA0 A;  5FC4 A;  1F16 A;  4K5B C;  5FMI A;  2W3L A;  4ZEQ A;  3IHD A;  1LXL A;  1R2G A;  1MAZ A;  5KTG A;  5JSB A;  5FDR A;  1R2D A;  2ABO A;  2BZW A;  2K7W A;  3IIH A;  2KBW A;  1MK3 A; 
#chains in the Genus database with same CATH topology
 2NLA A;  4OYD A;  5IEZ A;  1G5J A;  2K36 A;  4BPJ A;  2KUA A;  2O2N A;  2VOF A;  3QBR A;  2VOG A;  3KJ2 A;  2MHS A;  4HW4 A;  4MI8 A;  4S0O A;  1TY4 A;  2I39 A;  2VOH A;  5C6H A;  2YV6 A;  4BBB A;  4HW3 A;  2JCN A;  4YJ4 A;  2JBY A;  2PQK A;  5KU9 A;  4ZIG A;  2O42 A;  2MEJ A;  2UXE A;  4BD6 A;  4OQ5 A;  4ZIE A;  5FDO A;  4ZBI A;  1YSN A;  4ZII A;  3ILC A;  4QNQ A;  4ZIF A;  1R2E A;  4S0P A;  4BDU A;  1OHU A;  4YK9 A;  1YSW A;  4BD8 A;  2VVW A;  2ROC A;  1ZY3 A;  1DDB A;  1R2H A;  1WSX A;  4B4S A;  4G35 A;  2A5Y A;  1PQ1 A;  4ZBF A;  2B48 A;  2V6Q A;  3DVU A;  1YSG A;  2O22 A;  5C3F A;  1YSI A;  3D7V A;  2XPX A;  2VVX A;  1GJH A;  3WIY A;  1G5M A;  4BD7 A;  3MQP A;  2O21 A;  3KJ0 A;  3IO9 A;  3BL2 A;  4BD2 A;  3MK8 A;  4UF3 A;  2JM6 B;  4HW2 A;  4U2U A;  2IMT A;  1BXL A;  2VM6 A;  3WIX A;  3KJ1 A;  2M5B A;  1AF3 A;  4ZIH A;  4LQK A;  2VOI A;  4M0S A;  2ROD A;  1R2I A;  2WH6 A;  4U2V A;  2BID A;  5IF4 A;  2VVY A;  4UF1 A;  3JRV A;  4BPI A;  1O0L A;  1PQ0 A;  4D2L A;  1Q59 A;  2ME8 A;  2IMS A;  4QVX A;  4BBD A;  3KZ0 A;  4BBC A;  2LR1 A;  1K3K A;  4WMR A;  2VTY A;  3IHC A;  3IHE A;  2O2M A;  3IIG A;  3PK1 A;  4OQ6 A;  2NL9 A;  3CVA X;  3I1H A;  2O2F A;  2XA0 A;  5FC4 A;  4D2M A;  1F16 A;  4K5B C;  5FMI A;  2W3L A;  4ZEQ A;  3IHD A;  1LXL A;  1R2G A;  1MAZ A;  4UF2 A;  5KTG A;  5JSB A;  5FDR A;  1R2D A;  2ABO A;  2BZW A;  2K7W A;  3IIH A;  2JBX A;  2KBW A;  1MK3 A; 
#chains in the Genus database with same CATH homology
 2NLA A;  4OYD A;  5IEZ A;  1G5J A;  4BPJ A;  2KUA A;  2O2N A;  2VOF A;  3QBR A;  2VOG A;  3KJ2 A;  2MHS A;  4HW4 A;  4MI8 A;  4S0O A;  1TY4 A;  2VOH A;  5C6H A;  2YV6 A;  4HW3 A;  2JCN A;  4YJ4 A;  2PQK A;  5KU9 A;  4ZIG A;  2MEJ A;  4BD6 A;  4OQ5 A;  4ZIE A;  5FDO A;  4ZBI A;  1YSN A;  4ZII A;  3ILC A;  4QNQ A;  4ZIF A;  1R2E A;  4S0P A;  4BDU A;  1OHU A;  4YK9 A;  1YSW A;  4BD8 A;  2ROC A;  1ZY3 A;  1DDB A;  1R2H A;  1WSX A;  4B4S A;  4G35 A;  2A5Y A;  1PQ1 A;  4ZBF A;  2B48 A;  2V6Q A;  3DVU A;  1YSG A;  2O22 A;  5C3F A;  1YSI A;  3D7V A;  2XPX A;  1GJH A;  3WIY A;  1G5M A;  4BD7 A;  3MQP A;  2O21 A;  3KJ0 A;  3IO9 A;  3BL2 A;  4BD2 A;  3MK8 A;  2JM6 B;  4HW2 A;  4U2U A;  2IMT A;  1BXL A;  2VM6 A;  3WIX A;  3KJ1 A;  2M5B A;  1AF3 A;  4ZIH A;  2VOI A;  2ROD A;  1R2I A;  2WH6 A;  4U2V A;  2BID A;  5IF4 A;  4BPI A;  1O0L A;  1PQ0 A;  1Q59 A;  2ME8 A;  2IMS A;  4QVX A;  3KZ0 A;  2LR1 A;  1K3K A;  4WMR A;  3IHC A;  3IHE A;  2O2M A;  3IIG A;  3PK1 A;  4OQ6 A;  2NL9 A;  3CVA X;  3I1H A;  2O2F A;  2XA0 A;  5FC4 A;  1F16 A;  4K5B C;  5FMI A;  2W3L A;  4ZEQ A;  3IHD A;  1LXL A;  1R2G A;  1MAZ A;  5KTG A;  5JSB A;  5FDR A;  1R2D A;  2ABO A;  2BZW A;  2K7W A;  3IIH A;  2KBW A;  1MK3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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