4OYEA

Crystal structure of gltph r397a in apo
Total Genus 132
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
Knots found
sequence length
409
structure length
402
Chain Sequence
IEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGATMVNVTGDLTGTAIVAKTE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein
molecule keywords 425aa long hypothetical proton glutamate symport protein
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 132
structure length 402
sequence length 409
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
other databases KnotProt 2.0: S +31 +31
ec nomenclature
pdb deposition date 2014-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporter 4oyeA00
4KY0A 4P19A 4P3JA 4OYFA 2NWLA 3KBCA 4OYEA 5CFYA 2NWWA 5DWYA 1XFHA 2NWXA 5E9SA 3V8FA 4P1AA
chains in the Genus database with same CATH superfamily
4KY0A 4P19A 4P3JA 4OYFA 2NWLA 3KBCA 4OYEA 5CFYA 2NWWA 5DWYA 1XFHA 2NWXA 5E9SA 3V8FA 4P1AA
chains in the Genus database with same CATH topology
4KY0A 4P19A 4P3JA 4OYFA 2NWLA 3KBCA 4OYEA 5CFYA 2NWWA 5DWYA 1XFHA 2NWXA 5E9SA 3V8FA 4P1AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KY0 A;  4P19 A;  4P3J A;  4OYF A;  2NWL A;  3KBC A;  4OYE A;  5CFY A;  2NWW A;  5DWY A;  1XFH A;  2NWX A;  5E9S A;  3V8F A;  4P1A A; 
#chains in the Genus database with same CATH topology
 4KY0 A;  4P19 A;  4P3J A;  4OYF A;  2NWL A;  3KBC A;  4OYE A;  5CFY A;  2NWW A;  5DWY A;  1XFH A;  2NWX A;  5E9S A;  3V8F A;  4P1A A; 
#chains in the Genus database with same CATH homology
 4KY0 A;  4P19 A;  4P3J A;  4OYF A;  2NWL A;  3KBC A;  4OYE A;  5CFY A;  2NWW A;  5DWY A;  1XFH A;  2NWX A;  5E9S A;  3V8F A;  4P1A A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...