4P1XB

Crystal structure of staphylococcal luk prepore
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
275
structure length
257
Chain Sequence
DIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNISFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Gamma-hemolysin component C
publication title Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 62
structure length 257
sequence length 275
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2014-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 4p1xB00
2YGTA 4P1YA 3ROHA 3B07B 2QK7B 7AHLA 4H56A 4TW1B 3M2LA 1PVLA 3LKFA 4P1XA 4IYAA 4IYCA 5K59C 4IDJA 4P1YB 2QK7A 4I0NA 5K59A 3O44A 4P24A 4Q7GA 3B07A 3M3RA 4YHDA 2LKFA 3M4DA 4IZLA 3ANZA 4TW1A 4IYTA 4P1XB 4U6VA 4J0OA 3M4EA 1T5RA 1LKFA
chains in the Genus database with same CATH superfamily
2YGTA 4P1YA 3ROHA 3B07B 2QK7B 7AHLA 4H56A 4TW1B 3M2LA 1PVLA 3LKFA 4P1XA 4IYAA 4IYCA 5K59C 4IDJA 4P1YB 2QK7A 1XEZA 4I0NA 3O44A 4P24A 4Q7GA 3B07A 5K59A 3M3RA 4YHDA 2LKFA 3M4DA 4IZLA 3ANZA 4TW1A 4IYTA 4P1XB 4U6VA 4J0OA 3M4EA 1T5RA 1LKFA
chains in the Genus database with same CATH topology
2YGTA 4P1YA 3ROHA 3B07B 2QK7B 7AHLA 4H56A 4TW1B 3M2LA 1PVLA 3LKFA 4P1XA 4IYAA 4IYCA 5K59C 4IDJA 4P1YB 2QK7A 4I0NA 5K59A 3O44A 4P24A 4Q7GA 3B07A 3M3RA 4YHDA 2LKFA 3M4DA 4IZLA 3ANZA 4TW1A 4IYTA 4P1XB 4U6VA 4J0OA 3M4EA 1T5RA 1LKFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YGT A;  4P1Y A;  3ROH A;  3B07 B;  2QK7 B;  7AHL A;  4H56 A;  4TW1 B;  3M2L A;  1PVL A;  3LKF A;  4P1X A;  4IYA A;  4IYC A;  5K59 C;  4IDJ A;  4P1Y B;  2QK7 A;  4I0N A;  5K59 A;  3O44 A;  4P24 A;  4Q7G A;  3B07 A;  3M3R A;  4YHD A;  2LKF A;  3M4D A;  4IZL A;  3ANZ A;  4TW1 A;  4IYT A;  4P1X B;  4U6V A;  4J0O A;  3M4E A;  1T5R A;  1LKF A; 
#chains in the Genus database with same CATH topology
 2YGT A;  4P1Y A;  3ROH A;  3B07 B;  2QK7 B;  7AHL A;  4H56 A;  4TW1 B;  3M2L A;  1PVL A;  3LKF A;  4P1X A;  4IYA A;  4IYC A;  5K59 C;  4IDJ A;  4P1Y B;  2QK7 A;  1XEZ A;  4I0N A;  3O44 A;  4P24 A;  4Q7G A;  3B07 A;  5K59 A;  3M3R A;  4YHD A;  2LKF A;  3M4D A;  4IZL A;  3ANZ A;  4TW1 A;  4IYT A;  4P1X B;  4U6V A;  4J0O A;  3M4E A;  1T5R A;  1LKF A; 
#chains in the Genus database with same CATH homology
 2YGT A;  4P1Y A;  3ROH A;  3B07 B;  2QK7 B;  7AHL A;  4H56 A;  4TW1 B;  3M2L A;  1PVL A;  3LKF A;  4P1X A;  4IYA A;  4IYC A;  5K59 C;  4IDJ A;  4P1Y B;  2QK7 A;  4I0N A;  5K59 A;  3O44 A;  4P24 A;  4Q7G A;  3B07 A;  3M3R A;  4YHD A;  2LKF A;  3M4D A;  4IZL A;  3ANZ A;  4TW1 A;  4IYT A;  4P1X B;  4U6V A;  4J0O A;  3M4E A;  1T5R A;  1LKF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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