4P3EC

Structure of the human srp s domain
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
195
structure length
179
Chain Sequence
LSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNDLLTDNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein/rna
molecule keywords SRP RNA (124-mer)
publication title SRP RNA remodeling by SRP68 explains its role in protein translocation.
pubmed doi rcsb
source organism Homo sapiens
total genus 81
structure length 179
sequence length 195
ec nomenclature
pdb deposition date 2014-03-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3450.40 Mainly Alpha Orthogonal Bundle Hyaluronidase domain-like Hyaluronidase domain-like 4p3eC00
5M73C 4P3EC 4P3GA 4P3FA
chains in the Genus database with same CATH superfamily
2IJQA 3IKOC 4P3GA 4P3FA 4P3EC 2GNXA 5M73C 3JROC
chains in the Genus database with same CATH topology
3IKOC 4P3GA 4P3FA 4P3EC 2GNXA 5M73C 3JROC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M73 C;  4P3E C;  4P3G A;  4P3F A; 
#chains in the Genus database with same CATH topology
 2IJQ A;  3IKO C;  4P3G A;  4P3F A;  4P3E C;  2GNX A;  5M73 C;  3JRO C; 
#chains in the Genus database with same CATH homology
 3IKO C;  4P3G A;  4P3F A;  4P3E C;  2GNX A;  5M73 C;  3JRO C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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