4P6PA

Structure of ribb complexed with inhibitor (4peh) and metal ions
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
216
structure length
216
Chain Sequence
NQSSLLAEFGDPITRVENALQALREGRGVLLLDDEDRENEGDIIYAVESLTTAQMALMIRECSGIVCLCLTEAQADRLALPPMVVNNNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGSMAKTPEIIEFGKLHNMPVLTIEDMVQYRIQFDLKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase/lyase inhibitor
molecule keywords 3,4-dihydroxy-2-butanone 4-phosphate synthase
publication title Structural Basis for Competitive Inhibition of 3,4-Dihydroxy-2-butanone-4-phosphate Synthase from Vibrio cholerae.
pubmed doi rcsb
source organism Vibrio cholerae serotype o1
total genus 73
structure length 216
sequence length 216
chains with identical sequence B
ec nomenclature ec 4.1.99.12: 3,4-dihydroxy-2-butanone-4-phosphate synthase.
pdb deposition date 2014-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00926 DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.870.10 Alpha Beta Alpha-Beta Complex DHBP synthase DHBP synthase 4p6pA00
1HRUA 3H07A 3LQUA 4P6CA 1K49A 2RIUA 4I14A 2RISA 4P6PA 1K4IA 3L7VA 1K4OA 1JCUA 4P8JA 1K7JA 3LRJA 3MIOA 3MK5A 3AJEA 2MX1A 1K4PA 1PVWA 3LS6A 1TKUA 4E1BA 1K4LA 2EQAA 4P8EA 1TKSA 1SNNA 4P6DA 1G58A 1KK9A 3MGZA 4FFJA 1IEZA 1G57A 4P77A 1PVYA
chains in the Genus database with same CATH superfamily
3TTCA 1HRUA 3H07A 3LQUA 4P6CA 3VF4A 1K49A 2RIUA 4I14A 2RISA 4P6PA 3TSUA 1K4IA 3L7VA 3TTFA 1K4OA 1JCUA 4P8JA 3VEXA 1K7JA 3VEOA 3LRJA 3MIOA 3MK5A 3AJEA 2MX1A 3VTHA 1K4PA 1PVWA 3LS6A 3VEWA 3TSPA 3VENA 3VTIA 1TKUA 3TSQA 1K4LA 4E1BA 2EQAA 3VETA 4P8EA 1TKSA 3VF2A 1SNNA 4P6DA 1G58A 3TTDA 1KK9A 3VEZA 3MGZA 4FFJA 3VESA 3VERA 1IEZA 1G57A 4P77A 1PVYA
chains in the Genus database with same CATH topology
3TTCA 1HRUA 3H07A 3LQUA 4P6CA 3VF4A 1K49A 2RIUA 4I14A 2RISA 4P6PA 3TSUA 1K4IA 3L7VA 3TTFA 1K4OA 1JCUA 4P8JA 3VEXA 1K7JA 3VEOA 3LRJA 3MIOA 3MK5A 3AJEA 2MX1A 3VTHA 1K4PA 1PVWA 3LS6A 3VEWA 3TSPA 3VENA 3VTIA 1TKUA 3TSQA 1K4LA 4E1BA 2EQAA 3VETA 4P8EA 1TKSA 3VF2A 1SNNA 4P6DA 1G58A 3TTDA 1KK9A 3VEZA 3MGZA 4FFJA 3VESA 3VERA 1IEZA 1G57A 4P77A 1PVYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HRU A;  3H07 A;  3LQU A;  4P6C A;  1K49 A;  2RIU A;  4I14 A;  2RIS A;  4P6P A;  1K4I A;  3L7V A;  1K4O A;  1JCU A;  4P8J A;  1K7J A;  3LRJ A;  3MIO A;  3MK5 A;  3AJE A;  2MX1 A;  1K4P A;  1PVW A;  3LS6 A;  1TKU A;  4E1B A;  1K4L A;  2EQA A;  4P8E A;  1TKS A;  1SNN A;  4P6D A;  1G58 A;  1KK9 A;  3MGZ A;  4FFJ A;  1IEZ A;  1G57 A;  4P77 A;  1PVY A; 
#chains in the Genus database with same CATH topology
 3TTC A;  1HRU A;  3H07 A;  3LQU A;  4P6C A;  3VF4 A;  1K49 A;  2RIU A;  4I14 A;  2RIS A;  4P6P A;  3TSU A;  1K4I A;  3L7V A;  3TTF A;  1K4O A;  1JCU A;  4P8J A;  3VEX A;  1K7J A;  3VEO A;  3LRJ A;  3MIO A;  3MK5 A;  3AJE A;  2MX1 A;  3VTH A;  1K4P A;  1PVW A;  3LS6 A;  3VEW A;  3TSP A;  3VEN A;  3VTI A;  1TKU A;  3TSQ A;  1K4L A;  4E1B A;  2EQA A;  3VET A;  4P8E A;  1TKS A;  3VF2 A;  1SNN A;  4P6D A;  1G58 A;  3TTD A;  1KK9 A;  3VEZ A;  3MGZ A;  4FFJ A;  3VES A;  3VER A;  1IEZ A;  1G57 A;  4P77 A;  1PVY A; 
#chains in the Genus database with same CATH homology
 3TTC A;  1HRU A;  3H07 A;  3LQU A;  4P6C A;  3VF4 A;  1K49 A;  2RIU A;  4I14 A;  2RIS A;  4P6P A;  3TSU A;  1K4I A;  3L7V A;  3TTF A;  1K4O A;  1JCU A;  4P8J A;  3VEX A;  1K7J A;  3VEO A;  3LRJ A;  3MIO A;  3MK5 A;  3AJE A;  2MX1 A;  3VTH A;  1K4P A;  1PVW A;  3LS6 A;  3VEW A;  3TSP A;  3VEN A;  3VTI A;  1TKU A;  3TSQ A;  1K4L A;  4E1B A;  2EQA A;  3VET A;  4P8E A;  1TKS A;  3VF2 A;  1SNN A;  4P6D A;  1G58 A;  3TTD A;  1KK9 A;  3VEZ A;  3MGZ A;  4FFJ A;  3VES A;  3VER A;  1IEZ A;  1G57 A;  4P77 A;  1PVY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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