4PIIA

Crystal structure of hypothetical protein pf0907 from pyrococcus furiosus solved by sulfur sad using swiss light source data
Total Genus 89
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
239
structure length
239
Chain Sequence
ELVEIIKGIGIEGAKEVEEKVDRQFYALQYLFRHQDPEMFIKLVIANSLVSYQLTGRGEDWWWEFARYFSGREVDSIWKAYGEFLPKSKNNRRLIEAKLNRIRKVEGFLSTLTLKDLEGYYKNMKMLWKALIKIMGSREDSKTIVFTVKMFGYASRIAFSRFIPYPMEIPIPEDLRIKSVTSKLTQEKPTKFWMKIGQESGVPPLHIDSLIWPLLGNADLTPLDIELRNKLMKLTELLG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords N-glycosylase/DNA lyase
publication title Fast native-SAD phasing for routine macromolecular structure determination.
pubmed doi rcsb
source organism Pyrococcus furiosus
molecule tags Unknown function
total genus 89
structure length 239
sequence length 239
ec nomenclature ec 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
pdb deposition date 2014-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09171 AGOG N-glycosylase/DNA lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 4piiA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 4piiA01
1NKUA 4UNFA 2I5WA 1EBMA 1WEGA 1PU6A 1N39A 1HU0A 4YPHA 3CVSA 2OFKA 3FSPA 2NOZA 3N5NX 1NGNA 1LWWA 1YQKA 2JHNA 1YQMA 4UOBA 4EA5A 1VRLA 4EJYA 3CWSA 4EVVA 4E9FA 1XG7A 2YG9A 4E9GA 4EW4A 1MUDA 1RRQA 1KQJA 3F10A 5CHZA 2NOLA 1PU7A 3G0QA 1MPGA 1WEFA 1MUYA 4B23A 1LWYA 2NOBA 4OFAA 4OFEA 4AI5A 1YQRA 1P7MA 2JG6A 3N0UA 1KG3A 3FHFA 4YPRA 4AI4A 1FN7A 5AN4A 1XQOA 3I0WA 1KG7A 4B21A 5KN9A 3KTUA 3OH6A 4EA4A 1ORPA 1P59A 3S6IA 3CVTA 1MUNA 5DPKA 3OH9A 1LMZA 5KN8A 4EW0A 1KG5A 4OFHA 2H56A 2NOFA 3CWAA 1KEAA 1M3QA 4E9EA 3F0ZA 4HSBA 2ABKA 3OGDA 2YG8A 2OFIA 2JHJA 3I0XA 1DIZA 1RRSA 3KNTA 1YQLA 4E9HA 3IHOA 1ORNA 3D4VA 4DK9A 1N3CA 1PU8A 1PVSA 2NOHA 4PIIA 2NOEA 4AIAA 1KG2A 3FHGA 1XQPA 4B22A 4B24A 1M3HA 1N3AA 1KG4A 3CWTA 4YOQA 4EJZA 1WEIA 1KG6A 1LWVA 1KO9A 2NOIA 3IH7A 3CW7A 2XHIA 3CWUA
chains in the Genus database with same CATH superfamily
4BDZA 4BE0A 3OYHA 3L2UA 1NKUA 3OYKA 4UNFA 2I5WA 3L2WA 1EBMA 1WEGA 4BDYA 1PU6A 3S3NA 3CWUA 4E7IA 1N39A 4ZTFA 1HU0A 2W04A 4YPHA 3CVSA 2OFKA 3FSPA 3VW4A 2NOZA 3N5NX 1NGNA 1LWWA 2W03A 1YQKA 2JHNA 3OYEA 3OYAA 1YQMA 4UOBA 4EA5A 1VRLA 4EJYA 3CWSA 4EVVA 4E9FA 3OYDA 1XG7A 2YG9A 4E9GA 4EW4A 3OY9A 1MUDA 1RRQA 1KQJA 3F10A 4BE2A 5FROA 4IKFA 5CHZA 4E7HA 2NOLA 1PU7A 3OYCA 3G0QA 1MPGA 1WEFA 1MUYA 4B23A 3L2VA 1LWYA 2NOBA 4OFAA 5FRNA 4OFEA 3OYMA 1YQRA 1P7MA 2JG6A 3N0UA 1KG3A 3FHFA 4YPRA 4AI4A 3LCNA 1FN7A 4E7JA 5AN4A 1XQOA 3I0WA 2V75A 1KG7A 2JPSA 4ZTJA 3OYIA 4B21A 5KN9A 3KTUA 3L2QA 3OH6A 4EA4A 1ORPA 1P59A 3L2RA 3S6IA 4E7KA 3CVTA 1MUNA 5DPKA 3OH9A 3OS0A 1LMZA 5KN8A 3S3MA 4EW0A 1KG5A 4OFHA 2H56A 2NOFA 3CWAA 4NZGA 1KEAA 3OS2A 1M3QA 4E9EA 3F0ZA 4E7LA 4HSBA 2ABKA 3OYLA 3OGDA 5FRMA 2YG8A 2OFIA 2JHJA 3I0XA 4BACA 1DIZA 1U84A 1RRSA 3OYJA 3KNTA 1YQLA 4BE1A 4E9HA 3IHOA 1ORNA 3D4VA 3OYFA 4DK9A 1N3CA 3OYGA 1PU8A 1PVSA 2NOHA 4PIIA 2NOEA 4AIAA 3OS1A 1KG2A 3FHGA 1XQPA 4B22A 4B24A 3S3OA 1M3HA 3OYNA 3R2XC 1N3AA 1KG4A 3CWTA 4YOQA 3OYBA 1WEIA 4EJZA 1KG6A 1LWVA 1KO9A 2NOIA 3IH7A 3CW7A 3NNQA 2XHIA 4AI5A
chains in the Genus database with same CATH topology
1NKUA 4UNFA 2I5WA 1EBMA 1WEGA 1PU6A 1N39A 1HU0A 4YPHA 3CVSA 2OFKA 3FSPA 2NOZA 3N5NX 1NGNA 1LWWA 1YQKA 2JHNA 1YQMA 4UOBA 4EA5A 1VRLA 4EJYA 3CWSA 4EVVA 4E9FA 1XG7A 2YG9A 4E9GA 4EW4A 1MUDA 1RRQA 1KQJA 3F10A 5CHZA 2NOLA 1PU7A 3G0QA 1MPGA 1WEFA 1MUYA 4B23A 1LWYA 2NOBA 4OFAA 4OFEA 4AI5A 1YQRA 1P7MA 2JG6A 3N0UA 1KG3A 3FHFA 4YPRA 4AI4A 1FN7A 5AN4A 1XQOA 3I0WA 1KG7A 4B21A 5KN9A 3KTUA 3OH6A 4EA4A 1ORPA 1P59A 3S6IA 3CVTA 1MUNA 5DPKA 3OH9A 1LMZA 5KN8A 4EW0A 1KG5A 4OFHA 2H56A 2NOFA 3CWAA 1KEAA 1M3QA 4E9EA 3F0ZA 4HSBA 2ABKA 3OGDA 2YG8A 2OFIA 2JHJA 3I0XA 1DIZA 1RRSA 3KNTA 1YQLA 4E9HA 3IHOA 1ORNA 3D4VA 4DK9A 1N3CA 1PU8A 1PVSA 2NOHA 4PIIA 2NOEA 4AIAA 1KG2A 3FHGA 1XQPA 4B22A 4B24A 1M3HA 1N3AA 1KG4A 3CWTA 4YOQA 4EJZA 1WEIA 1KG6A 1LWVA 1KO9A 2NOIA 3IH7A 3CW7A 2XHIA 3CWUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NKU A;  4UNF A;  2I5W A;  1EBM A;  1WEG A;  1PU6 A;  1N39 A;  1HU0 A;  4YPH A;  3CVS A;  2OFK A;  3FSP A;  2NOZ A;  3N5N X;  1NGN A;  1LWW A;  1YQK A;  2JHN A;  1YQM A;  4UOB A;  4EA5 A;  1VRL A;  4EJY A;  3CWS A;  4EVV A;  4E9F A;  1XG7 A;  2YG9 A;  4E9G A;  4EW4 A;  1MUD A;  1RRQ A;  1KQJ A;  3F10 A;  5CHZ A;  2NOL A;  1PU7 A;  3G0Q A;  1MPG A;  1WEF A;  1MUY A;  4B23 A;  1LWY A;  2NOB A;  4OFA A;  4OFE A;  4AI5 A;  1YQR A;  1P7M A;  2JG6 A;  3N0U A;  1KG3 A;  3FHF A;  4YPR A;  4AI4 A;  1FN7 A;  5AN4 A;  1XQO A;  3I0W A;  1KG7 A;  4B21 A;  5KN9 A;  3KTU A;  3OH6 A;  4EA4 A;  1ORP A;  1P59 A;  3S6I A;  3CVT A;  1MUN A;  5DPK A;  3OH9 A;  1LMZ A;  5KN8 A;  4EW0 A;  1KG5 A;  4OFH A;  2H56 A;  2NOF A;  3CWA A;  1KEA A;  1M3Q A;  4E9E A;  3F0Z A;  4HSB A;  2ABK A;  3OGD A;  2YG8 A;  2OFI A;  2JHJ A;  3I0X A;  1DIZ A;  1RRS A;  3KNT A;  1YQL A;  4E9H A;  3IHO A;  1ORN A;  3D4V A;  4DK9 A;  1N3C A;  1PU8 A;  1PVS A;  2NOH A;  4PII A;  2NOE A;  4AIA A;  1KG2 A;  3FHG A;  1XQP A;  4B22 A;  4B24 A;  1M3H A;  1N3A A;  1KG4 A;  3CWT A;  4YOQ A;  4EJZ A;  1WEI A;  1KG6 A;  1LWV A;  1KO9 A;  2NOI A;  3IH7 A;  3CW7 A;  2XHI A;  3CWU A; 
#chains in the Genus database with same CATH topology
 4BDZ A;  4BE0 A;  3OYH A;  3L2U A;  1NKU A;  3OYK A;  4UNF A;  2I5W A;  3L2W A;  1EBM A;  1WEG A;  4BDY A;  1PU6 A;  3S3N A;  3CWU A;  4E7I A;  1N39 A;  4ZTF A;  1HU0 A;  2W04 A;  4YPH A;  3CVS A;  2OFK A;  3FSP A;  3VW4 A;  2NOZ A;  3N5N X;  1NGN A;  1LWW A;  2W03 A;  1YQK A;  2JHN A;  3OYE A;  3OYA A;  1YQM A;  4UOB A;  4EA5 A;  1VRL A;  4EJY A;  3CWS A;  4EVV A;  4E9F A;  3OYD A;  1XG7 A;  2YG9 A;  4E9G A;  4EW4 A;  3OY9 A;  1MUD A;  1RRQ A;  1KQJ A;  3F10 A;  4BE2 A;  5FRO A;  4IKF A;  5CHZ A;  4E7H A;  2NOL A;  1PU7 A;  3OYC A;  3G0Q A;  1MPG A;  1WEF A;  1MUY A;  4B23 A;  3L2V A;  1LWY A;  2NOB A;  4OFA A;  5FRN A;  4OFE A;  3OYM A;  1YQR A;  1P7M A;  2JG6 A;  3N0U A;  1KG3 A;  3FHF A;  4YPR A;  4AI4 A;  3LCN A;  1FN7 A;  4E7J A;  5AN4 A;  1XQO A;  3I0W A;  2V75 A;  1KG7 A;  2JPS A;  4ZTJ A;  3OYI A;  4B21 A;  5KN9 A;  3KTU A;  3L2Q A;  3OH6 A;  4EA4 A;  1ORP A;  1P59 A;  3L2R A;  3S6I A;  4E7K A;  3CVT A;  1MUN A;  5DPK A;  3OH9 A;  3OS0 A;  1LMZ A;  5KN8 A;  3S3M A;  4EW0 A;  1KG5 A;  4OFH A;  2H56 A;  2NOF A;  3CWA A;  4NZG A;  1KEA A;  3OS2 A;  1M3Q A;  4E9E A;  3F0Z A;  4E7L A;  4HSB A;  2ABK A;  3OYL A;  3OGD A;  5FRM A;  2YG8 A;  2OFI A;  2JHJ A;  3I0X A;  4BAC A;  1DIZ A;  1U84 A;  1RRS A;  3OYJ A;  3KNT A;  1YQL A;  4BE1 A;  4E9H A;  3IHO A;  1ORN A;  3D4V A;  3OYF A;  4DK9 A;  1N3C A;  3OYG A;  1PU8 A;  1PVS A;  2NOH A;  4PII A;  2NOE A;  4AIA A;  3OS1 A;  1KG2 A;  3FHG A;  1XQP A;  4B22 A;  4B24 A;  3S3O A;  1M3H A;  3OYN A;  3R2X C;  1N3A A;  1KG4 A;  3CWT A;  4YOQ A;  3OYB A;  1WEI A;  4EJZ A;  1KG6 A;  1LWV A;  1KO9 A;  2NOI A;  3IH7 A;  3CW7 A;  3NNQ A;  2XHI A;  4AI5 A; 
#chains in the Genus database with same CATH homology
 1NKU A;  4UNF A;  2I5W A;  1EBM A;  1WEG A;  1PU6 A;  1N39 A;  1HU0 A;  4YPH A;  3CVS A;  2OFK A;  3FSP A;  2NOZ A;  3N5N X;  1NGN A;  1LWW A;  1YQK A;  2JHN A;  1YQM A;  4UOB A;  4EA5 A;  1VRL A;  4EJY A;  3CWS A;  4EVV A;  4E9F A;  1XG7 A;  2YG9 A;  4E9G A;  4EW4 A;  1MUD A;  1RRQ A;  1KQJ A;  3F10 A;  5CHZ A;  2NOL A;  1PU7 A;  3G0Q A;  1MPG A;  1WEF A;  1MUY A;  4B23 A;  1LWY A;  2NOB A;  4OFA A;  4OFE A;  4AI5 A;  1YQR A;  1P7M A;  2JG6 A;  3N0U A;  1KG3 A;  3FHF A;  4YPR A;  4AI4 A;  1FN7 A;  5AN4 A;  1XQO A;  3I0W A;  1KG7 A;  4B21 A;  5KN9 A;  3KTU A;  3OH6 A;  4EA4 A;  1ORP A;  1P59 A;  3S6I A;  3CVT A;  1MUN A;  5DPK A;  3OH9 A;  1LMZ A;  5KN8 A;  4EW0 A;  1KG5 A;  4OFH A;  2H56 A;  2NOF A;  3CWA A;  1KEA A;  1M3Q A;  4E9E A;  3F0Z A;  4HSB A;  2ABK A;  3OGD A;  2YG8 A;  2OFI A;  2JHJ A;  3I0X A;  1DIZ A;  1RRS A;  3KNT A;  1YQL A;  4E9H A;  3IHO A;  1ORN A;  3D4V A;  4DK9 A;  1N3C A;  1PU8 A;  1PVS A;  2NOH A;  4PII A;  2NOE A;  4AIA A;  1KG2 A;  3FHG A;  1XQP A;  4B22 A;  4B24 A;  1M3H A;  1N3A A;  1KG4 A;  3CWT A;  4YOQ A;  4EJZ A;  1WEI A;  1KG6 A;  1LWV A;  1KO9 A;  2NOI A;  3IH7 A;  3CW7 A;  2XHI A;  3CWU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...