4PJ0O

Structure of t.elongatus photosystem ii, rows of dimers crystal packing
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
242
structure length
242
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase, electron transport
publication title Native-like Photosystem II Superstructure at 2.44 angstrom Resolution through Detergent Extraction from the Protein Crystal.
pubmed doi rcsb
molecule keywords Photosystem Q(B) protein 1
total genus 46
structure length 242
sequence length 242
chains with identical sequence o
ec nomenclature
pdb deposition date 2014-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 4pj0O01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 4pj0O02
5B5EO 5GTHO 5KAFO 4UB6O 3A0HO 5TISO 5G39A 5G3AA 1S5LO 5G38A 3A0BO 5KAIO 3KZIO 3WU2O 5GTIO 2AXTO 5E79O 4UB8O 4IL6O 5H2FO 4PJ0O 5B66O 3JCUO
chains in the Genus database with same CATH superfamily
1GFOA 2N2MA 3DA4A 3RBHA 3O0EA 4AUIA 3UAQA 2OMFA 3T20A 4FRTA 4O4XA 3SZVA 3VZTX 4JCHA 5DL5A 3POQA 2R4LA 4RJXA 3DA3A 4QQ1A 3EMNX 4FT6A 2XE1A 1PRNA 4O49A 5AFUK 2W80C 1ORMA 3KVDD 4E1TA 2GE4A 3PQUA 2N2LA 1S5LO 3HW9A 4CTDA 3PF1A 2LFUA 3AA6B 5G38A 4GF4A 3PRNA 1QJPA 3K19A 5GV0A 3AA6A 5KAIO 4RLBA 4AKRB 2KDYA 2J1NA 3PORA 4LSHA 5D5DA 4KR8A 3WI4A 7PRNA 4K3CA 4FQEA 3VY9X 4AKRA 5IYUA 4AZLA 1T1LA 3LK3B 4AYNA 1G90A 2R4NA 4IL6O 4PJ0O 3GP6A 3SYBA 1IZNB 5H2FO 3LK3A 2XE3A 3SY7A 1IZNA 4E1SA 5B66O 5DL7A 3FYXA 2ZFGA 5ADXL 3AA1B 1MM5A 3VE1A 2FGQX 2O4VA 4D64A 2K0LA 3AA1A 3T0SA 4Z3TA 1ZHWA 4G75A 4GHBA 4O3YA 2Y0HA 4FZLA 5G26A 4FUVA 3POUA 3LK41 3PGSA 3G7GA 2ERVA 4FSOA 3HWBA 4FESA 4G76A 4AYEC 3DWOX 2PRNA 2FGRA 4RJWA 2XE2A 4FMSA 4O3WA 2IWWA 3KZIO 4FZNA 1E54A 4AYDC 1GFQA 1ZHTA 3TZGA 4N59A 2PORA 2KC0A 2R89A 3POXA 2MNHA 3T24A 4AFKA 2LHFA 2Y7SA 5E79O 3LK2B 4XNLA 3BS0A 3SY9A 2M06A 4GCQA 3NJTA 5JDPA 1ZHXA 4AKMA 4F4BA 3AA0B 2XMXA 3NSGA 3AA0A 1HXTA 4GCPA 4AYID 5B5EO 4U9CA 2QTKA 2R4PA 2WJRA 4XNKA 2IWVA 1HXUA 4UB6O 4D5UA 3UU2A 3VY8X 4C00A 2X27X 2XTQA 4FSPA 2X9KA 2XTRA 5ADXK 3QRAA 3UPGA 2F1VA 3A0HO 2XG6A 2MHLA 5DL8A 5TISO 2Y0LA 4FRXA 1GFPA 5G39A 5T5FA 1QJ8A 3DWNA 4C69X 5DL6A 4BUMX 4JFBA 3VZUX 2WVPA 8PRNA 4RL9A 3WI5A 1BXWA 4B61A 3BRYA 3WU2O 1T16A 2R4OA 5FVNA 2AXTO 4GCSA 3SZDA 4N75A 2W81C 4RLCA 4C4VB 3PGUA 1QJ9A 1MM4A 5EE2A 4K3BA 2F1TA 5GTIO 4C4VA 3JCUO 2XE5A 3AA7B 3LK2A 1OSMA 3HOLA 4FOZA 6PRNA 1OPFA 3LK42 1BT9A 2K4TA 3AA7A 4LSIA 4FZMA 4N58A 5AFUL 5GTHO 2F1CX 1Q9FA 5KAFO 3A2SX 4D65A 2YPVA 2J4UP 1PHOA 1ZHZA 4N74A 4AYMC 3PQSA 1YS5A 2KXPB 2JMMA 3SYSA 2Y2XA 3AAEB 1THQA 2ZLDA 2KXPA 3VZWX 5G3AA 3AAAB 3AAEA 4LSEA 4O3ZA 2M07A 1MPFA 2Y0KA 4LSFA 3AAAA 3BRZA 3HOEA 3A0BO 3VE2A 2WJQA 4KR4A 3C5OA 1GFMA 2ODJA 3JTYA 3V8UA 2R8AA 3PGRA 4KRAA 4PUXA 2KZ7B 1BH3A 2JQYA 1GFNA 1Q9GA 1HXXA 1ZHYA 3DZMA 3QRCA 2R88A 1H6S1 1P4TA 2KZ7A 4O4UA 4PR7A 4UB8O 5PRNA 4O3XB 2YNKA
chains in the Genus database with same CATH topology
5B5EO 5GTHO 5KAFO 4UB6O 3A0HO 5TISO 5G39A 5G3AA 1S5LO 5G38A 3A0BO 5KAIO 3KZIO 3WU2O 5GTIO 2AXTO 5E79O 4UB8O 4IL6O 5H2FO 4PJ0O 5B66O 3JCUO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5B5E O;  5GTH O;  5KAF O;  4UB6 O;  3A0H O;  5TIS O;  5G39 A;  5G3A A;  1S5L O;  5G38 A;  3A0B O;  5KAI O;  3KZI O;  3WU2 O;  5GTI O;  2AXT O;  5E79 O;  4UB8 O;  4IL6 O;  5H2F O;  4PJ0 O;  5B66 O;  3JCU O; 
#chains in the Genus database with same CATH topology
 1GFO A;  2N2M A;  3DA4 A;  3RBH A;  3O0E A;  4AUI A;  3UAQ A;  2OMF A;  3T20 A;  4FRT A;  4O4X A;  3SZV A;  3VZT X;  4JCH A;  5DL5 A;  3POQ A;  2R4L A;  4RJX A;  3DA3 A;  4QQ1 A;  3EMN X;  4FT6 A;  2XE1 A;  1PRN A;  4O49 A;  5AFU K;  2W80 C;  1ORM A;  3KVD D;  4E1T A;  2GE4 A;  3PQU A;  2N2L A;  1S5L O;  3HW9 A;  4CTD A;  3PF1 A;  2LFU A;  3AA6 B;  5G38 A;  4GF4 A;  3PRN A;  1QJP A;  3K19 A;  5GV0 A;  3AA6 A;  5KAI O;  4RLB A;  4AKR B;  2KDY A;  2J1N A;  3POR A;  4LSH A;  5D5D A;  4KR8 A;  3WI4 A;  7PRN A;  4K3C A;  4FQE A;  3VY9 X;  4AKR A;  5IYU A;  4AZL A;  1T1L A;  3LK3 B;  4AYN A;  1G90 A;  2R4N A;  4IL6 O;  4PJ0 O;  3GP6 A;  3SYB A;  1IZN B;  5H2F O;  3LK3 A;  2XE3 A;  3SY7 A;  1IZN A;  4E1S A;  5B66 O;  5DL7 A;  3FYX A;  2ZFG A;  5ADX L;  3AA1 B;  1MM5 A;  3VE1 A;  2FGQ X;  2O4V A;  4D64 A;  2K0L A;  3AA1 A;  3T0S A;  4Z3T A;  1ZHW A;  4G75 A;  4GHB A;  4O3Y A;  2Y0H A;  4FZL A;  5G26 A;  4FUV A;  3POU A;  3LK4 1;  3PGS A;  3G7G A;  2ERV A;  4FSO A;  3HWB A;  4FES A;  4G76 A;  4AYE C;  3DWO X;  2PRN A;  2FGR A;  4RJW A;  2XE2 A;  4FMS A;  4O3W A;  2IWW A;  3KZI O;  4FZN A;  1E54 A;  4AYD C;  1GFQ A;  1ZHT A;  3TZG A;  4N59 A;  2POR A;  2KC0 A;  2R89 A;  3POX A;  2MNH A;  3T24 A;  4AFK A;  2LHF A;  2Y7S A;  5E79 O;  3LK2 B;  4XNL A;  3BS0 A;  3SY9 A;  2M06 A;  4GCQ A;  3NJT A;  5JDP A;  1ZHX A;  4AKM A;  4F4B A;  3AA0 B;  2XMX A;  3NSG A;  3AA0 A;  1HXT A;  4GCP A;  4AYI D;  5B5E O;  4U9C A;  2QTK A;  2R4P A;  2WJR A;  4XNK A;  2IWV A;  1HXU A;  4UB6 O;  4D5U A;  3UU2 A;  3VY8 X;  4C00 A;  2X27 X;  2XTQ A;  4FSP A;  2X9K A;  2XTR A;  5ADX K;  3QRA A;  3UPG A;  2F1V A;  3A0H O;  2XG6 A;  2MHL A;  5DL8 A;  5TIS O;  2Y0L A;  4FRX A;  1GFP A;  5G39 A;  5T5F A;  1QJ8 A;  3DWN A;  4C69 X;  5DL6 A;  4BUM X;  4JFB A;  3VZU X;  2WVP A;  8PRN A;  4RL9 A;  3WI5 A;  1BXW A;  4B61 A;  3BRY A;  3WU2 O;  1T16 A;  2R4O A;  5FVN A;  2AXT O;  4GCS A;  3SZD A;  4N75 A;  2W81 C;  4RLC A;  4C4V B;  3PGU A;  1QJ9 A;  1MM4 A;  5EE2 A;  4K3B A;  2F1T A;  5GTI O;  4C4V A;  3JCU O;  2XE5 A;  3AA7 B;  3LK2 A;  1OSM A;  3HOL A;  4FOZ A;  6PRN A;  1OPF A;  3LK4 2;  1BT9 A;  2K4T A;  3AA7 A;  4LSI A;  4FZM A;  4N58 A;  5AFU L;  5GTH O;  2F1C X;  1Q9F A;  5KAF O;  3A2S X;  4D65 A;  2YPV A;  2J4U P;  1PHO A;  1ZHZ A;  4N74 A;  4AYM C;  3PQS A;  1YS5 A;  2KXP B;  2JMM A;  3SYS A;  2Y2X A;  3AAE B;  1THQ A;  2ZLD A;  2KXP A;  3VZW X;  5G3A A;  3AAA B;  3AAE A;  4LSE A;  4O3Z A;  2M07 A;  1MPF A;  2Y0K A;  4LSF A;  3AAA A;  3BRZ A;  3HOE A;  3A0B O;  3VE2 A;  2WJQ A;  4KR4 A;  3C5O A;  1GFM A;  2ODJ A;  3JTY A;  3V8U A;  2R8A A;  3PGR A;  4KRA A;  4PUX A;  2KZ7 B;  1BH3 A;  2JQY A;  1GFN A;  1Q9G A;  1HXX A;  1ZHY A;  3DZM A;  3QRC A;  2R88 A;  1H6S 1;  1P4T A;  2KZ7 A;  4O4U A;  4PR7 A;  4UB8 O;  5PRN A;  4O3X B;  2YNK A; 
#chains in the Genus database with same CATH homology
 5B5E O;  5GTH O;  5KAF O;  4UB6 O;  3A0H O;  5TIS O;  5G39 A;  5G3A A;  1S5L O;  5G38 A;  3A0B O;  5KAI O;  3KZI O;  3WU2 O;  5GTI O;  2AXT O;  5E79 O;  4UB8 O;  4IL6 O;  5H2F O;  4PJ0 O;  5B66 O;  3JCU O; 
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similar chains in the pdb database (?% sequence similarity)

 
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