4PR7A

Kdgm porin in complex with disordered oligogalacturonate
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
217
structure length
171
Chain Sequence
VSIDYRHEMQDGHKDRLLISHRFANGFGLSSEVKWAQSVSNGTEVVASYVYKFNSVFSIEPGFSLESGSSNNNYRPYLRGRANVTDDLSVALRYRPYFKRKGYTLTGNIDYTFLKDYTIGYELEYKKGTSYDITHNVKLSYKWDKNWKPYVEVGNVSRQTRYRVGVQYSFH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Outer membrane protein
molecule keywords Oligogalacturonate-specific porin KdgM
publication title Structure of the oligogalacturonate-specific KdgM porin.
pubmed doi rcsb
source organism Dickeya dadantii
total genus 45
structure length 171
sequence length 217
ec nomenclature
pdb deposition date 2014-03-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 4pr7A00
4PR7A 2WJQA 4FQEA 2IWVA 2JQYA 2WJRA 2IWWA 2F1CX 4CTDA 2WVPA 2X9KA
chains in the Genus database with same CATH superfamily
1ZHXA 2LFUA 4FQEA 7PRNA 2KXPA 3PRNA 2ODJA 1BXWA 3SY9A 6PRNA 4GCPA 4N75A 4D64A 5T5FA 8PRNA 4O4UA 5H2FO 2F1VA 3AA6A 3VZWX 3T0SA 3LK2B 2XTQA 3AA7A 3EMNX 3FYXA 4PR7A 2KDYA 2XE2A 4FRXA 2KZ7A 2R4PA 2FGQX 3G7GA 3NSGA 2IWWA 1OSMA 1E54A 2W80C 3WI5A 4AKRB 3VY8X 4C69X 3POQA 3SY7A 5GV0A 2R4NA 2M07A 4FZNA 3O0EA 5TISO 2OMFA 3PQUA 1MM5A 3DWOX 2WVPA 1MM4A 4FOZA 3T24A 3JTYA 4C4VB 1QJPA 3AA0A 2X27X 3AA1B 3AAAB 4G75A 3C5OA 3AAEB 4CTDA 3LK3B 3PGRA 2Y0LA 4KR8A 1HXTA 4RJXA 4AYDC 4AYID 2IWVA 4PUXA 3VZUX 3A2SX 2PORA 3DA3A 4XNLA 3K19A 5DL5A 2Y7SA 3BS0A 4RLCA 4RL9A 5G39A 3VE1A 1IZNB 2N2MA 4O3WA 5E79O 3T20A 3LK42 4AUIA 3DZMA 1GFNA 3WU2O 4AYNA 1G90A 4LSHA 3LK2A 1T1LA 4UB6O 3POUA 1PRNA 3JCUO 2K0LA 2XE5A 4PJ0O 5B5EO 4O4XA 5AFUK 1BT9A 2JMMA 3PORA 1H6S1 5D5DA 4FSOA 4FZMA 2LHFA 1ZHWA 3QRAA 5DL7A 3GP6A 3UPGA 2R8AA 2X9KA 4F4BA 4N58A 1BH3A 4IL6O 3UAQA 3HOLA 3A0BO 2KXPB 4C00A 2KC0A 3HWBA 4O3YA 2N2LA 3AA6B 3LK41 2PRNA 2Y0HA 3WI4A 3RBHA 4AFKA 2KZ7B 4C4VA 3SYSA 3HOEA 2ZFGA 5B66O 3AAAA 4AKMA 2MHLA 3AAEA 1P4TA 3LK3A 2YPVA 3VE2A 1QJ8A 1ZHYA 3KVDD 4AYEC 4GHBA 2ZLDA 2FGRA 2Y0KA 2XE3A 3VZTX 2MNHA 5KAIO 4KRAA 4D5UA 3SZVA 1QJ9A 4K3BA 3SZDA 1MPFA 2WJQA 3DA4A 1HXXA 3PGSA 5KAFO 2JQYA 4GCSA 3SYBA 5PRNA 2R4LA 3AA0B 2XTRA 5ADXK 5ADXL 2XG6A 1THQA 4AKRA 3KZIO 4U9CA 2J1NA 2M06A 4LSFA 3TZGA 4N74A 1Q9GA 4FMSA 2F1TA 1T16A 4XNKA 4FSPA 5FVNA 5GTIO 4FUVA 2R89A 3PQSA 1Q9FA 3HW9A 4FT6A 4AYMC 4E1SA 3AA7B 3VY9X 4O49A 1GFMA 1ZHZA 4BUMX 1ORMA 2ERVA 4JFBA 5AFUL 4RJWA 3UU2A 4E1TA 3AA1A 2J4UP 4FESA 4LSIA 4K3CA 4RLBA 5DL6A 1HXUA 3DWNA 3PGUA 3V8UA 4N59A 1OPFA 5G26A 4D65A 4Z3TA 2R88A 2W81C 1GFPA 2XMXA 4QQ1A 5EE2A 4B61A 5JDPA 3BRZA 2QTKA 3PF1A 2YNKA 3QRCA 4FRTA 4O3XB 1IZNA 4UB8O 2GE4A 3POXA 5DL8A 3A0HO 4JCHA 1PHOA 5GTHO 3NJTA 1S5LO 2F1CX 4LSEA 2K4TA 2AXTO 2Y2XA 4GCQA 4G76A 4FZLA 5G38A 1ZHTA 2O4VA 1YS5A 2WJRA 4O3ZA 4AZLA 4GF4A 4KR4A 2R4OA 3BRYA 1GFOA 5G3AA 1GFQA 5IYUA 2XE1A
chains in the Genus database with same CATH topology
4PR7A 2WJQA 4FQEA 2IWVA 2JQYA 2WJRA 2IWWA 2F1CX 4CTDA 2WVPA 2X9KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PR7 A;  2WJQ A;  4FQE A;  2IWV A;  2JQY A;  2WJR A;  2IWW A;  2F1C X;  4CTD A;  2WVP A;  2X9K A; 
#chains in the Genus database with same CATH topology
 1ZHX A;  2LFU A;  4FQE A;  7PRN A;  2KXP A;  3PRN A;  2ODJ A;  1BXW A;  3SY9 A;  6PRN A;  4GCP A;  4N75 A;  4D64 A;  5T5F A;  8PRN A;  4O4U A;  5H2F O;  2F1V A;  3AA6 A;  3VZW X;  3T0S A;  3LK2 B;  2XTQ A;  3AA7 A;  3EMN X;  3FYX A;  4PR7 A;  2KDY A;  2XE2 A;  4FRX A;  2KZ7 A;  2R4P A;  2FGQ X;  3G7G A;  3NSG A;  2IWW A;  1OSM A;  1E54 A;  2W80 C;  3WI5 A;  4AKR B;  3VY8 X;  4C69 X;  3POQ A;  3SY7 A;  5GV0 A;  2R4N A;  2M07 A;  4FZN A;  3O0E A;  5TIS O;  2OMF A;  3PQU A;  1MM5 A;  3DWO X;  2WVP A;  1MM4 A;  4FOZ A;  3T24 A;  3JTY A;  4C4V B;  1QJP A;  3AA0 A;  2X27 X;  3AA1 B;  3AAA B;  4G75 A;  3C5O A;  3AAE B;  4CTD A;  3LK3 B;  3PGR A;  2Y0L A;  4KR8 A;  1HXT A;  4RJX A;  4AYD C;  4AYI D;  2IWV A;  4PUX A;  3VZU X;  3A2S X;  2POR A;  3DA3 A;  4XNL A;  3K19 A;  5DL5 A;  2Y7S A;  3BS0 A;  4RLC A;  4RL9 A;  5G39 A;  3VE1 A;  1IZN B;  2N2M A;  4O3W A;  5E79 O;  3T20 A;  3LK4 2;  4AUI A;  3DZM A;  1GFN A;  3WU2 O;  4AYN A;  1G90 A;  4LSH A;  3LK2 A;  1T1L A;  4UB6 O;  3POU A;  1PRN A;  3JCU O;  2K0L A;  2XE5 A;  4PJ0 O;  5B5E O;  4O4X A;  5AFU K;  1BT9 A;  2JMM A;  3POR A;  1H6S 1;  5D5D A;  4FSO A;  4FZM A;  2LHF A;  1ZHW A;  3QRA A;  5DL7 A;  3GP6 A;  3UPG A;  2R8A A;  2X9K A;  4F4B A;  4N58 A;  1BH3 A;  4IL6 O;  3UAQ A;  3HOL A;  3A0B O;  2KXP B;  4C00 A;  2KC0 A;  3HWB A;  4O3Y A;  2N2L A;  3AA6 B;  3LK4 1;  2PRN A;  2Y0H A;  3WI4 A;  3RBH A;  4AFK A;  2KZ7 B;  4C4V A;  3SYS A;  3HOE A;  2ZFG A;  5B66 O;  3AAA A;  4AKM A;  2MHL A;  3AAE A;  1P4T A;  3LK3 A;  2YPV A;  3VE2 A;  1QJ8 A;  1ZHY A;  3KVD D;  4AYE C;  4GHB A;  2ZLD A;  2FGR A;  2Y0K A;  2XE3 A;  3VZT X;  2MNH A;  5KAI O;  4KRA A;  4D5U A;  3SZV A;  1QJ9 A;  4K3B A;  3SZD A;  1MPF A;  2WJQ A;  3DA4 A;  1HXX A;  3PGS A;  5KAF O;  2JQY A;  4GCS A;  3SYB A;  5PRN A;  2R4L A;  3AA0 B;  2XTR A;  5ADX K;  5ADX L;  2XG6 A;  1THQ A;  4AKR A;  3KZI O;  4U9C A;  2J1N A;  2M06 A;  4LSF A;  3TZG A;  4N74 A;  1Q9G A;  4FMS A;  2F1T A;  1T16 A;  4XNK A;  4FSP A;  5FVN A;  5GTI O;  4FUV A;  2R89 A;  3PQS A;  1Q9F A;  3HW9 A;  4FT6 A;  4AYM C;  4E1S A;  3AA7 B;  3VY9 X;  4O49 A;  1GFM A;  1ZHZ A;  4BUM X;  1ORM A;  2ERV A;  4JFB A;  5AFU L;  4RJW A;  3UU2 A;  4E1T A;  3AA1 A;  2J4U P;  4FES A;  4LSI A;  4K3C A;  4RLB A;  5DL6 A;  1HXU A;  3DWN A;  3PGU A;  3V8U A;  4N59 A;  1OPF A;  5G26 A;  4D65 A;  4Z3T A;  2R88 A;  2W81 C;  1GFP A;  2XMX A;  4QQ1 A;  5EE2 A;  4B61 A;  5JDP A;  3BRZ A;  2QTK A;  3PF1 A;  2YNK A;  3QRC A;  4FRT A;  4O3X B;  1IZN A;  4UB8 O;  2GE4 A;  3POX A;  5DL8 A;  3A0H O;  4JCH A;  1PHO A;  5GTH O;  3NJT A;  1S5L O;  2F1C X;  4LSE A;  2K4T A;  2AXT O;  2Y2X A;  4GCQ A;  4G76 A;  4FZL A;  5G38 A;  1ZHT A;  2O4V A;  1YS5 A;  2WJR A;  4O3Z A;  4AZL A;  4GF4 A;  4KR4 A;  2R4O A;  3BRY A;  1GFO A;  5G3A A;  1GFQ A;  5IYU A;  2XE1 A; 
#chains in the Genus database with same CATH homology
 4PR7 A;  2WJQ A;  4FQE A;  2IWV A;  2JQY A;  2WJR A;  2IWW A;  2F1C X;  4CTD A;  2WVP A;  2X9K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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