4PUTA

Crystal structure of the arabidopsis thaliana top2 oligopeptidase
Total Genus 275
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
275
sequence length
692
structure length
692
Chain Sequence
TLSSNPLLQNFDFPPFDSVDAHHVRPGIRALLQQLEAELEQLEKAVEPSWPKLVEPLEKIIDRLSVVWGMINHLKAVKDTPELRAAIEEVQPEKVKFQLRLGQSKPIYNAFKAIRESPDWNSLSEARQRLVEAQIKEAVLSGIALEDDKREEFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPPSALGLFAQAAVSKGHETATADTGPWLITLDAPSYLPVMQHAKNRALREEVYRAYLSRASSGDLDNTAIIDQILKLRLEKAKLLGYRNYAEVSMATKMATVEKADELLEKLRSASWDPAVQDIEDLKSFAKNQGAAEADSLTHWDITFWSERLRESKYDINEEELRPYFSLPKVMDALFGLAKTLFGIDVVPADGVAPVWNSDVRFYCVKDSSGNPTAYFYFDPYSRPSEKRDGAWMDEVFSRSRVMAQKGSSVRLPVAQMVCNQTPPVGDKPSLMTFREVETVFHEFGHALQHMLTKEDEGLVAGIRNIEWDAVELPSQFMENWCYHRDTLMSIAKHYQTGETLPENVYKKLLAARTFRAGSLSLRQLKFATVDLELHTKYMPGGAETIYEVDQRVSIKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDIKAVKETGQRFRNTILALGGGKAPLKVFVEFRGREPSPEPLLRHNGLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Cytosolic oligopeptidase A
publication title Structure of the Arabidopsis thaliana TOP2 oligopeptidase.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 275
structure length 692
sequence length 692
ec nomenclature ec 3.4.24.70: Oligopeptidase A.
pdb deposition date 2014-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01432 Peptidase_M3 Peptidase family M3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1370.10 Mainly Alpha Orthogonal Bundle Neurolysin; domain 3 Neurolysin, domain 3 4putA02
1.10.1370.40 Mainly Alpha Orthogonal Bundle Neurolysin; domain 3 Neurolysin; domain 3 4putA01
4KA7A 1Y791 2O36A 4PUTA 1I1IP 5L43A 4KA8A 5L44A 2O3EA 1S4BP 4FXYP
chains in the Genus database with same CATH superfamily
3SKSA 2O36A 4KA8A 1KA4A 5L43A 3HQ2A 3DWCA 5L44A 3HOAA 2O3EA 4FXYP 2H1JA 4KA7A 1K9XA 3AHNA 1I1IP 2QR4A 5E3XA 1S4BP 2H1NA 1Y791 4PUTA 3CE2A 3AHOA 3AHMA 1KA2A
chains in the Genus database with same CATH topology
3SKSA 2O36A 4KA8A 1KA4A 5L43A 3HQ2A 3DWCA 5L44A 2O3EA 3HOAA 4FXYP 4KA7A 2H1JA 1K9XA 3AHNA 1I1IP 2QR4A 5E3XA 1S4BP 2H1NA 1Y791 4PUTA 3CE2A 3AHOA 3AHMA 1KA2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KA7 A;  1Y79 1;  2O36 A;  4PUT A;  1I1I P;  5L43 A;  4KA8 A;  5L44 A;  2O3E A;  1S4B P;  4FXY P; 
#chains in the Genus database with same CATH topology
 3SKS A;  2O36 A;  4KA8 A;  1KA4 A;  5L43 A;  3HQ2 A;  3DWC A;  5L44 A;  3HOA A;  2O3E A;  4FXY P;  2H1J A;  4KA7 A;  1K9X A;  3AHN A;  1I1I P;  2QR4 A;  5E3X A;  1S4B P;  2H1N A;  1Y79 1;  4PUT A;  3CE2 A;  3AHO A;  3AHM A;  1KA2 A; 
#chains in the Genus database with same CATH homology
 3SKS A;  2O36 A;  4KA8 A;  1KA4 A;  5L43 A;  3HQ2 A;  3DWC A;  5L44 A;  2O3E A;  3HOA A;  4FXY P;  4KA7 A;  2H1J A;  1K9X A;  3AHN A;  1I1I P;  2QR4 A;  5E3X A;  1S4B P;  2H1N A;  1Y79 1;  4PUT A;  3CE2 A;  3AHO A;  3AHM A;  1KA2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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