4PVAA

Crystal structure of gh62 hydrolase from thermophilic fungus scytalidium thermophilum
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
328
structure length
328
Chain Sequence
b'ENLYFQGSSWKWVSTGPLVFPKNDERNIAGIKDPTAVLINGTYHVFASTAKSEGYNMVYFNFTDFAEANNAPFYYLDQAPLGYGYRAAPQVFYFEPHKLWYLVYQNGNAAYSTNPDINDPSKWTAPEVFYPNGMPKIIADNIGNGYWVDMWVVCDDEEDPNKALCHLFSSDDNGHLYRSQTTLAQFPRGMSEPEIVLQDTQNIYALWEAACIYRIKGAEGTQKYLLLVEAIGQEGHRYFRSWTSDRIDGQWIPLADTEANPWAGEANVVFEGQKWTKSISHGEVIRTLTDQTLTLDLSEPIQFLYQGVDPNAQTEYNALPWRLGLITQ'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords GH62 hydrolase
publication title Functional and structural diversity in GH62 alpha-L-arabinofuranosidases from the thermophilic fungus Scytalidium thermophilum.
pubmed doi rcsb
source organism Scytalidium thermophilum
molecule tags Hydrolase
total genus 80
structure length 328
sequence length 328
ec nomenclature
pdb deposition date 2014-03-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.115.10.20 Mainly Beta 5 Propeller Tachylectin-2; Chain A Glycosyl hydrolase domain; family 43 4pvaA00
5FK8A 4O8OA 4COTA 1GYHA 5C0PA 3C2UA 2X8FA 4KC8A 4PVIA 3KSTA 3VT0A 2QQVA 2ADDA 2EXIA 4N2RA 3AKGA 5FMCA 4AK7A 4U6BA 3VT2A 5A8DA 3R4YA 3OM5A 3QEFA 5GLLA 5AYEA 5ANNA 4FFIA 1VKDA 3LIGA 3C7FA 4ONZA 4EQVA 4UDKE 5FMDA 2YFSA 3PIGA 3VSFA 4U6DA 5B6SA 5FLWA 5GLKA 3KF3A 3WATA 3KF5A 3OM7A 5FIXA 3ZXJA 3BYLA 3CU9A 1GYDB 3NQHA 3VSRA 3R4ZA 2EXKA 1YRZA 3WMYA 3C7OA 3QEEA 3C7HA 4N1IA 5GLMA 2EXHA 3D60A 2YFRA 5A7VA 4KCAA 1UV4A 3AKHA 3LIHA 5GLRA 4QQSA 3U75A 3WPUA 5B6TA 5JOZA 3LDKA 1Y9GA 4AK5A 3SC7X 3PIJA 4FFHA 3LV4A 3P2NA 5GLOA 3OM6A 3QEDA 3QZ4A 3VT1A 5GLNA 3LFIA 2AEYA 3UGGA 4PVAA 5A8CA 3LF7A 3D5ZA 3ZXKA 2B4WA 3OM4A 3RWKX 3R67A 5A7VB 3WASA 4FFFA 2X8TA 3WPVA 3BYNA 3OM2A 3VSSA 1Y9MA 4KC7A 4KCBA 5GLPA 5FKBA 2XQRA 3U14A 2AEZA 1Y7BA 3VSZA 2YFTA 3WPZA 2ADEA 1ST8A 2QQUA 5AY9A 5JOWA 3AKIA 4UDKA 5JOYA 3D5YA 4UDGA 3D61A 1W2TA 2VDTA 1UYPA 4N2ZA 2EXJA 4AK6A 5AYCA 3UGHA 2OXBA 4D47A 4O8PA 1WL7A 3BYKA 3LEMA 3K1UA 4MLGA 3WAUA 4KMIA 5JOXA 4UDIA 3C7EA 1OYGA 1YIFA 2QQWA 2X8SA 4NOVA 1PT2A 3WPYA 4FFGA 1GYEB 3WN0A 1YI7A 3AKFA 3TAWA 1Y4WA 3WN2A 3ZXLA 5GLQA 3BYJA 3QC2A 4UDJA 5FKCA 3C7GA 5FMBA 2AC1A 4O8NA 3WN1A 4N4BA 3WMZA 5AYDA 3LDRA 5FK7A 3UGFA 1W18A
chains in the Genus database with same CATH superfamily
5FK8A 4O8OA 4COTA 1GYHA 5C0PA 3C2UA 2X8FA 4KC8A 4PVIA 3KSTA 1TL2A 3VT0A 2QQVA 2ADDA 2EXIA 4N2RA 3AKGA 5FMCA 4AK7A 4U6BA 3VT2A 5A8DA 3R4YA 3OM5A 3QEFA 5GLLA 5AYEA 5ANNA 4FFIA 1VKDA 3LIGA 3C7FA 4ONZA 4EQVA 4UDKE 5FMDA 2YFSA 3PIGA 3VSFA 4U6DA 5B6SA 5FLWA 5GLKA 3KF3A 3WATA 3KF5A 3OM7A 5FIXA 3ZXJA 3BYLA 3CU9A 1GYDB 3NQHA 3VSRA 3R4ZA 5C2MA 2EXKA 1YRZA 3WMYA 3C7OA 3QEEA 3C7HA 4N1IA 5GLMA 2EXHA 3D60A 2YFRA 5A7VA 4KCAA 1UV4A 3AKHA 3LIHA 5GLRA 4QQSA 3U75A 3WPUA 5B6TA 5JOZA 3LDKA 1Y9GA 4AK5A 3SC7X 3PIJA 4FFHA 3LV4A 3P2NA 5GLOA 3OM6A 3QEDA 3QZ4A 3VT1A 5GLNA 3LFIA 2AEYA 3UGGA 4PVAA 5A8CA 3LF7A 3D5ZA 3ZXKA 2B4WA 3OM4A 3RWKX 3R67A 5A7VB 3WASA 4FFFA 2X8TA 3WPVA 3BYNA 3OM2A 3VSSA 1Y9MA 4KC7A 4KCBA 5GLPA 5FKBA 2XQRA 3U14A 2AEZA 1Y7BA 3VSZA 2YFTA 3WPZA 2ADEA 1ST8A 2QQUA 5AY9A 5JOWA 3AKIA 4UDKA 5JOYA 3D5YA 4UDGA 3D61A 1W2TA 2VDTA 1UYPA 4N2ZA 2EXJA 4AK6A 5AYCA 3UGHA 2OXBA 4D47A 4O8PA 1WL7A 3BYKA 3LEMA 3K1UA 4MLGA 3WAUA 4KMIA 5JOXA 4UDIA 3C7EA 1OYGA 1YIFA 2QQWA 2X8SA 4NOVA 1PT2A 3WPYA 4FFGA 1GYEB 3WN0A 1YI7A 3AKFA 3TAWA 1Y4WA 3WN2A 3ZXLA 5GLQA 3BYJA 3QC2A 4UDJA 5FKCA 3C7GA 5FMBA 2AC1A 4O8NA 3WN1A 4N4BA 3WMZA 5AYDA 3LDRA 5FK7A 3UGFA 1W18A
chains in the Genus database with same CATH topology
5FK8A 4O8OA 4COTA 1GYHA 5C0PA 3C2UA 2X8FA 4KC8A 4PVIA 3KSTA 3VT0A 2QQVA 2ADDA 2EXIA 4N2RA 3AKGA 5FMCA 4AK7A 4U6BA 3VT2A 5A8DA 3R4YA 3OM5A 3QEFA 5GLLA 5AYEA 5ANNA 4FFIA 1VKDA 3LIGA 3C7FA 4ONZA 4EQVA 4UDKE 5FMDA 2YFSA 3PIGA 3VSFA 4U6DA 5B6SA 5FLWA 5GLKA 3KF3A 3WATA 3KF5A 3OM7A 5FIXA 3ZXJA 3BYLA 3CU9A 1GYDB 3NQHA 3VSRA 3R4ZA 2EXKA 1YRZA 3WMYA 3C7OA 3QEEA 3C7HA 4N1IA 5GLMA 2EXHA 3D60A 2YFRA 5A7VA 4KCAA 1UV4A 3AKHA 3LIHA 5GLRA 4QQSA 3U75A 3WPUA 5B6TA 5JOZA 3LDKA 1Y9GA 4AK5A 3SC7X 3PIJA 4FFHA 3LV4A 3P2NA 5GLOA 3OM6A 3QEDA 3QZ4A 3VT1A 5GLNA 3LFIA 2AEYA 3UGGA 4PVAA 5A8CA 3LF7A 3D5ZA 3ZXKA 2B4WA 3OM4A 3RWKX 3R67A 5A7VB 3WASA 4FFFA 2X8TA 3WPVA 3BYNA 3OM2A 3VSSA 1Y9MA 4KC7A 4KCBA 5GLPA 5FKBA 2XQRA 3U14A 2AEZA 1Y7BA 3VSZA 2YFTA 3WPZA 2ADEA 1ST8A 2QQUA 5AY9A 5JOWA 3AKIA 4UDKA 5JOYA 3D5YA 4UDGA 3D61A 1W2TA 2VDTA 1UYPA 4N2ZA 2EXJA 4AK6A 5AYCA 3UGHA 2OXBA 4D47A 4O8PA 1WL7A 3BYKA 3LEMA 3K1UA 4MLGA 3WAUA 4KMIA 5JOXA 4UDIA 3C7EA 1OYGA 1YIFA 2QQWA 2X8SA 4NOVA 1PT2A 3WPYA 4FFGA 1GYEB 3WN0A 1YI7A 3AKFA 3TAWA 1Y4WA 3WN2A 3ZXLA 5GLQA 3BYJA 3QC2A 4UDJA 5FKCA 3C7GA 5FMBA 2AC1A 4O8NA 3WN1A 4N4BA 3WMZA 5AYDA 3LDRA 5FK7A 3UGFA 1W18A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FK8 A;  4O8O A;  4COT A;  1GYH A;  5C0P A;  3C2U A;  2X8F A;  4KC8 A;  4PVI A;  3KST A;  3VT0 A;  2QQV A;  2ADD A;  2EXI A;  4N2R A;  3AKG A;  5FMC A;  4AK7 A;  4U6B A;  3VT2 A;  5A8D A;  3R4Y A;  3OM5 A;  3QEF A;  5GLL A;  5AYE A;  5ANN A;  4FFI A;  1VKD A;  3LIG A;  3C7F A;  4ONZ A;  4EQV A;  4UDK E;  5FMD A;  2YFS A;  3PIG A;  3VSF A;  4U6D A;  5B6S A;  5FLW A;  5GLK A;  3KF3 A;  3WAT A;  3KF5 A;  3OM7 A;  5FIX A;  3ZXJ A;  3BYL A;  3CU9 A;  1GYD B;  3NQH A;  3VSR A;  3R4Z A;  2EXK A;  1YRZ A;  3WMY A;  3C7O A;  3QEE A;  3C7H A;  4N1I A;  5GLM A;  2EXH A;  3D60 A;  2YFR A;  5A7V A;  4KCA A;  1UV4 A;  3AKH A;  3LIH A;  5GLR A;  4QQS A;  3U75 A;  3WPU A;  5B6T A;  5JOZ A;  3LDK A;  1Y9G A;  4AK5 A;  3SC7 X;  3PIJ A;  4FFH A;  3LV4 A;  3P2N A;  5GLO A;  3OM6 A;  3QED A;  3QZ4 A;  3VT1 A;  5GLN A;  3LFI A;  2AEY A;  3UGG A;  4PVA A;  5A8C A;  3LF7 A;  3D5Z A;  3ZXK A;  2B4W A;  3OM4 A;  3RWK X;  3R67 A;  5A7V B;  3WAS A;  4FFF A;  2X8T A;  3WPV A;  3BYN A;  3OM2 A;  3VSS A;  1Y9M A;  4KC7 A;  4KCB A;  5GLP A;  5FKB A;  2XQR A;  3U14 A;  2AEZ A;  1Y7B A;  3VSZ A;  2YFT A;  3WPZ A;  2ADE A;  1ST8 A;  2QQU A;  5AY9 A;  5JOW A;  3AKI A;  4UDK A;  5JOY A;  3D5Y A;  4UDG A;  3D61 A;  1W2T A;  2VDT A;  1UYP A;  4N2Z A;  2EXJ A;  4AK6 A;  5AYC A;  3UGH A;  2OXB A;  4D47 A;  4O8P A;  1WL7 A;  3BYK A;  3LEM A;  3K1U A;  4MLG A;  3WAU A;  4KMI A;  5JOX A;  4UDI A;  3C7E A;  1OYG A;  1YIF A;  2QQW A;  2X8S A;  4NOV A;  1PT2 A;  3WPY A;  4FFG A;  1GYE B;  3WN0 A;  1YI7 A;  3AKF A;  3TAW A;  1Y4W A;  3WN2 A;  3ZXL A;  5GLQ A;  3BYJ A;  3QC2 A;  4UDJ A;  5FKC A;  3C7G A;  5FMB A;  2AC1 A;  4O8N A;  3WN1 A;  4N4B A;  3WMZ A;  5AYD A;  3LDR A;  5FK7 A;  3UGF A;  1W18 A; 
#chains in the Genus database with same CATH topology
 5FK8 A;  4O8O A;  4COT A;  1GYH A;  5C0P A;  3C2U A;  2X8F A;  4KC8 A;  4PVI A;  3KST A;  1TL2 A;  3VT0 A;  2QQV A;  2ADD A;  2EXI A;  4N2R A;  3AKG A;  5FMC A;  4AK7 A;  4U6B A;  3VT2 A;  5A8D A;  3R4Y A;  3OM5 A;  3QEF A;  5GLL A;  5AYE A;  5ANN A;  4FFI A;  1VKD A;  3LIG A;  3C7F A;  4ONZ A;  4EQV A;  4UDK E;  5FMD A;  2YFS A;  3PIG A;  3VSF A;  4U6D A;  5B6S A;  5FLW A;  5GLK A;  3KF3 A;  3WAT A;  3KF5 A;  3OM7 A;  5FIX A;  3ZXJ A;  3BYL A;  3CU9 A;  1GYD B;  3NQH A;  3VSR A;  3R4Z A;  5C2M A;  2EXK A;  1YRZ A;  3WMY A;  3C7O A;  3QEE A;  3C7H A;  4N1I A;  5GLM A;  2EXH A;  3D60 A;  2YFR A;  5A7V A;  4KCA A;  1UV4 A;  3AKH A;  3LIH A;  5GLR A;  4QQS A;  3U75 A;  3WPU A;  5B6T A;  5JOZ A;  3LDK A;  1Y9G A;  4AK5 A;  3SC7 X;  3PIJ A;  4FFH A;  3LV4 A;  3P2N A;  5GLO A;  3OM6 A;  3QED A;  3QZ4 A;  3VT1 A;  5GLN A;  3LFI A;  2AEY A;  3UGG A;  4PVA A;  5A8C A;  3LF7 A;  3D5Z A;  3ZXK A;  2B4W A;  3OM4 A;  3RWK X;  3R67 A;  5A7V B;  3WAS A;  4FFF A;  2X8T A;  3WPV A;  3BYN A;  3OM2 A;  3VSS A;  1Y9M A;  4KC7 A;  4KCB A;  5GLP A;  5FKB A;  2XQR A;  3U14 A;  2AEZ A;  1Y7B A;  3VSZ A;  2YFT A;  3WPZ A;  2ADE A;  1ST8 A;  2QQU A;  5AY9 A;  5JOW A;  3AKI A;  4UDK A;  5JOY A;  3D5Y A;  4UDG A;  3D61 A;  1W2T A;  2VDT A;  1UYP A;  4N2Z A;  2EXJ A;  4AK6 A;  5AYC A;  3UGH A;  2OXB A;  4D47 A;  4O8P A;  1WL7 A;  3BYK A;  3LEM A;  3K1U A;  4MLG A;  3WAU A;  4KMI A;  5JOX A;  4UDI A;  3C7E A;  1OYG A;  1YIF A;  2QQW A;  2X8S A;  4NOV A;  1PT2 A;  3WPY A;  4FFG A;  1GYE B;  3WN0 A;  1YI7 A;  3AKF A;  3TAW A;  1Y4W A;  3WN2 A;  3ZXL A;  5GLQ A;  3BYJ A;  3QC2 A;  4UDJ A;  5FKC A;  3C7G A;  5FMB A;  2AC1 A;  4O8N A;  3WN1 A;  4N4B A;  3WMZ A;  5AYD A;  3LDR A;  5FK7 A;  3UGF A;  1W18 A; 
#chains in the Genus database with same CATH homology
 5FK8 A;  4O8O A;  4COT A;  1GYH A;  5C0P A;  3C2U A;  2X8F A;  4KC8 A;  4PVI A;  3KST A;  3VT0 A;  2QQV A;  2ADD A;  2EXI A;  4N2R A;  3AKG A;  5FMC A;  4AK7 A;  4U6B A;  3VT2 A;  5A8D A;  3R4Y A;  3OM5 A;  3QEF A;  5GLL A;  5AYE A;  5ANN A;  4FFI A;  1VKD A;  3LIG A;  3C7F A;  4ONZ A;  4EQV A;  4UDK E;  5FMD A;  2YFS A;  3PIG A;  3VSF A;  4U6D A;  5B6S A;  5FLW A;  5GLK A;  3KF3 A;  3WAT A;  3KF5 A;  3OM7 A;  5FIX A;  3ZXJ A;  3BYL A;  3CU9 A;  1GYD B;  3NQH A;  3VSR A;  3R4Z A;  2EXK A;  1YRZ A;  3WMY A;  3C7O A;  3QEE A;  3C7H A;  4N1I A;  5GLM A;  2EXH A;  3D60 A;  2YFR A;  5A7V A;  4KCA A;  1UV4 A;  3AKH A;  3LIH A;  5GLR A;  4QQS A;  3U75 A;  3WPU A;  5B6T A;  5JOZ A;  3LDK A;  1Y9G A;  4AK5 A;  3SC7 X;  3PIJ A;  4FFH A;  3LV4 A;  3P2N A;  5GLO A;  3OM6 A;  3QED A;  3QZ4 A;  3VT1 A;  5GLN A;  3LFI A;  2AEY A;  3UGG A;  4PVA A;  5A8C A;  3LF7 A;  3D5Z A;  3ZXK A;  2B4W A;  3OM4 A;  3RWK X;  3R67 A;  5A7V B;  3WAS A;  4FFF A;  2X8T A;  3WPV A;  3BYN A;  3OM2 A;  3VSS A;  1Y9M A;  4KC7 A;  4KCB A;  5GLP A;  5FKB A;  2XQR A;  3U14 A;  2AEZ A;  1Y7B A;  3VSZ A;  2YFT A;  3WPZ A;  2ADE A;  1ST8 A;  2QQU A;  5AY9 A;  5JOW A;  3AKI A;  4UDK A;  5JOY A;  3D5Y A;  4UDG A;  3D61 A;  1W2T A;  2VDT A;  1UYP A;  4N2Z A;  2EXJ A;  4AK6 A;  5AYC A;  3UGH A;  2OXB A;  4D47 A;  4O8P A;  1WL7 A;  3BYK A;  3LEM A;  3K1U A;  4MLG A;  3WAU A;  4KMI A;  5JOX A;  4UDI A;  3C7E A;  1OYG A;  1YIF A;  2QQW A;  2X8S A;  4NOV A;  1PT2 A;  3WPY A;  4FFG A;  1GYE B;  3WN0 A;  1YI7 A;  3AKF A;  3TAW A;  1Y4W A;  3WN2 A;  3ZXL A;  5GLQ A;  3BYJ A;  3QC2 A;  4UDJ A;  5FKC A;  3C7G A;  5FMB A;  2AC1 A;  4O8N A;  3WN1 A;  4N4B A;  3WMZ A;  5AYD A;  3LDR A;  5FK7 A;  3UGF A;  1W18 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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