4PVKA

Phl p 4 i153v n158h variant, a glucose oxidase
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
490
structure length
490
Chain Sequence
EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHTVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTVGVGGHFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Pollen allergen Phl p 4.0202
publication title Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction.
pubmed doi rcsb
source organism Phleum pratense
total genus 160
structure length 490
sequence length 490
ec nomenclature
pdb deposition date 2014-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 4pvkA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 4pvkA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 4pvkA03
3FWAA 2Q85A 3FW8A 4UD8A 5AE1A 3TSHA 1ZR6A 1I19A 3S1DA 2Q4WA 4XLOA 1WYGA 1N60C 3D2HA 2VFSA 2QPMA 3EUB3 2AXRA 4PVEA 5HMRA 4JB1A 3S1EA 1AHZA 2Y4GA 3HSUA 1VAOA 3NVZB 1QLUA 2VFTA 3DQ0A 5HHZA 2VFUA 2E3TA 3W8WA 1FFVC 4PZFA 1E8GA 1V97A 4PVKA 3AN1A 1WVEA 5L6GA 4EC3A 1MBBA 1HSKA 2W3SA 1T3QC 3AMZA 2Y3SA 4BBYA 2VAOA 3FW9A 4PVJA 3TSJA 3W8XA 1E8HA 2Y08A 3TX1A 3SR6B 3POPA 1QLTA 1AHUA 4ZOHB 1JROA 2EXRA 3D2JA 1N63C 3BW7A 1UXYA 2QKNA 1FIQB 1FFUC 1N5XA 1W1MA 2WDWA 4BC9A 5FXDA 1MBTA 2IPIA 4O95A 5ADZA 2Y3RA 5I1VA 2BVHA 1VDVA 1W1RA 3NRZB 1W1KA 3S1FA 4MLAA 4DNSA 2GQTA 2VFRA 4PWBA 4JAYA 3RJAA 2W3RA 3W8ZA 2W55A 1E0YA 3C0PA 4PYTA 5I1WA 5AWVA 3JS8A 2GQUA 1E8FA 4OALA 3B9JB 1N5WC 4BC7A 3ETRB 1AHVA 5AE3A 5D79A 3RJ8A 3NS1B 3D2DA 2I0KA 3PM9A 5FXFA 3KJMA 5L6FA 1WVFA 3PQBA 1ZXIC 1DZNA 2BVGA 4BCAA 1DIIA 2W54A 3S1CA 3VTEA 1N61C 4PVHA 1W1JA 2BVFA 1W1QA 3FW7A 5HQXA 1FO4A 1W1LA 1W1OA 2VFVA 3GSYA 4PWCA 5AE2A 3AM9A 1N62C 2MBRA 5FXEA 3I99A 4ML8A 5K8EA 5FXPA 1F0XA 1DIQA 1W1SA
chains in the Genus database with same CATH superfamily
3FWAA 2Q85A 3FW8A 4UD8A 5AE1A 3TSHA 1ZR6A 1I19A 3S1DA 3NVWB 2Q4WA 4XLOA 1WYGA 1N60C 3D2HA 2VFSA 2QPMA 3EUB3 2AXRA 4PVEA 3EJDB 4JB1A 3S1EA 1AHZA 5HMRA 2Y4GA 3HSUA 1VAOA 3NVZB 1QLUA 2VFTA 3DQ0A 5HHZA 2VFUA 3NVYB 2E3TA 3W8WA 2UUVA 2PLIA 1FFVC 4PZFA 2RK5A 2P13A 1E8GA 1V97A 4PVKA 3AN1A 1WVEA 5L6GA 5G5HB 1JRPA 4EC3A 1MBBA 1HSKA 2UUUA 3HRDC 2W3SA 1T3QC 3AMZA 2Y3SA 4BBYA 2VAOA 3FW9A 4PVJA 3TSJA 3W8XA 1E8HA 2Y08A 1RM6B 3NVVB 3TX1A 3SR6B 3POPA 1QLTA 1AHUA 2O3GA 4ZOHB 1JROA 2EXRA 3D2JA 1N63C 3BW7A 1UXYA 2QKNA 1FIQB 1FFUC 1N5XA 1W1MA 2WDWA 4BC9A 5FXDA 2NQWA 1MBTA 2IPIA 4O95A 5ADZA 2Y3RA 2P4PA 5I1VA 2BVHA 2P3HA 1VDVA 1W1RA 3NRZB 1W1KA 3S1FA 3DEDA 4MLAA 4DNSA 2GQTA 2VFRA 4PWBA 4JAYA 3RJAA 2W3RA 3W8ZA 2W55A 1E0YA 3C0PA 4PYTA 5I1WA 3LLBA 5AWVA 3JS8A 2GQUA 3EJBB 1E8FA 4OALA 3B9JB 1N5WC 4BC7A 1SB3B 3ETRB 1AHVA 5AE3A 5D79A 2R2ZA 3RJ8A 2OAIA 3NS1B 4HG0A 3D2DA 2I0KA 3EJEB 3PM9A 5FXFA 3LAEA 5G5GB 3KJMA 5L6FA 1WVFA 3PQBA 1ZXIC 1DZNA 2BVGA 4BCAA 1DIIA 2W54A 3S1CA 3VTEA 1N61C 4PVHA 1W1JA 2BVFA 1W1QA 3FW7A 2YVSA 5HQXA 1FO4A 1W1LA 2PLSA 1W1OA 2VFVA 3GSYA 4PWCA 5AE2A 3AM9A 2R8DA 1N62C 2MBRA 5FXEA 3I99A 4ML8A 5K8EA 5FXPA 1F0XA 1DIQA 1W1SA
chains in the Genus database with same CATH topology
3FWAA 2Q85A 3FW8A 4UD8A 5AE1A 3TSHA 1ZR6A 1I19A 3S1DA 3NVWB 2Q4WA 4XLOA 1WYGA 1N60C 3D2HA 2VFSA 2QPMA 3EUB3 2AXRA 4PVEA 5HMRA 4JB1A 3S1EA 1AHZA 2Y4GA 3HSUA 1VAOA 3NVZB 1QLUA 2VFTA 3DQ0A 5HHZA 2VFUA 3NVYB 2E3TA 3W8WA 2UUVA 2PLIA 1FFVC 4PZFA 2RK5A 2P13A 1E8GA 1V97A 4PVKA 3AN1A 1WVEA 5L6GA 5G5HB 1JRPA 4EC3A 1MBBA 1HSKA 2UUUA 3HRDC 2W3SA 1T3QC 3AMZA 2Y3SA 4BBYA 2VAOA 3FW9A 4PVJA 3TSJA 3W8XA 1E8HA 2Y08A 1RM6B 3NVVB 3TX1A 3SR6B 3POPA 1QLTA 1AHUA 2O3GA 4ZOHB 1JROA 2EXRA 3D2JA 1N63C 3BW7A 1UXYA 2QKNA 1FIQB 1FFUC 1N5XA 1W1MA 2WDWA 4BC9A 5FXDA 2NQWA 1MBTA 2IPIA 4O95A 5ADZA 2Y3RA 2P4PA 5I1VA 2BVHA 2P3HA 1VDVA 1W1RA 3NRZB 1W1KA 3S1FA 3DEDA 4MLAA 4DNSA 2GQTA 2VFRA 4PWBA 4JAYA 3RJAA 2W3RA 3W8ZA 2W55A 1E0YA 3C0PA 4PYTA 5I1WA 3LLBA 5AWVA 3JS8A 2GQUA 1E8FA 4OALA 3B9JB 1N5WC 4BC7A 1SB3B 3ETRB 1AHVA 5AE3A 5D79A 2R2ZA 3RJ8A 2OAIA 3NS1B 4HG0A 3D2DA 2I0KA 3PM9A 5FXFA 3LAEA 5G5GB 3KJMA 5L6FA 1WVFA 3PQBA 1ZXIC 1DZNA 2BVGA 4BCAA 1DIIA 2W54A 3S1CA 3VTEA 1N61C 4PVHA 1W1JA 2BVFA 1W1QA 3FW7A 2YVSA 5HQXA 1FO4A 1W1LA 2PLSA 1W1OA 2VFVA 3GSYA 4PWCA 5AE2A 3AM9A 2R8DA 1N62C 2MBRA 5FXEA 3I99A 4ML8A 5K8EA 5FXPA 1F0XA 1DIQA 1W1SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FWA A;  2Q85 A;  3FW8 A;  4UD8 A;  5AE1 A;  3TSH A;  1ZR6 A;  1I19 A;  3S1D A;  2Q4W A;  4XLO A;  1WYG A;  1N60 C;  3D2H A;  2VFS A;  2QPM A;  3EUB 3;  2AXR A;  4PVE A;  5HMR A;  4JB1 A;  3S1E A;  1AHZ A;  2Y4G A;  3HSU A;  1VAO A;  3NVZ B;  1QLU A;  2VFT A;  3DQ0 A;  5HHZ A;  2VFU A;  2E3T A;  3W8W A;  1FFV C;  4PZF A;  1E8G A;  1V97 A;  4PVK A;  3AN1 A;  1WVE A;  5L6G A;  4EC3 A;  1MBB A;  1HSK A;  2W3S A;  1T3Q C;  3AMZ A;  2Y3S A;  4BBY A;  2VAO A;  3FW9 A;  4PVJ A;  3TSJ A;  3W8X A;  1E8H A;  2Y08 A;  3TX1 A;  3SR6 B;  3POP A;  1QLT A;  1AHU A;  4ZOH B;  1JRO A;  2EXR A;  3D2J A;  1N63 C;  3BW7 A;  1UXY A;  2QKN A;  1FIQ B;  1FFU C;  1N5X A;  1W1M A;  2WDW A;  4BC9 A;  5FXD A;  1MBT A;  2IPI A;  4O95 A;  5ADZ A;  2Y3R A;  5I1V A;  2BVH A;  1VDV A;  1W1R A;  3NRZ B;  1W1K A;  3S1F A;  4MLA A;  4DNS A;  2GQT A;  2VFR A;  4PWB A;  4JAY A;  3RJA A;  2W3R A;  3W8Z A;  2W55 A;  1E0Y A;  3C0P A;  4PYT A;  5I1W A;  5AWV A;  3JS8 A;  2GQU A;  1E8F A;  4OAL A;  3B9J B;  1N5W C;  4BC7 A;  3ETR B;  1AHV A;  5AE3 A;  5D79 A;  3RJ8 A;  3NS1 B;  3D2D A;  2I0K A;  3PM9 A;  5FXF A;  3KJM A;  5L6F A;  1WVF A;  3PQB A;  1ZXI C;  1DZN A;  2BVG A;  4BCA A;  1DII A;  2W54 A;  3S1C A;  3VTE A;  1N61 C;  4PVH A;  1W1J A;  2BVF A;  1W1Q A;  3FW7 A;  5HQX A;  1FO4 A;  1W1L A;  1W1O A;  2VFV A;  3GSY A;  4PWC A;  5AE2 A;  3AM9 A;  1N62 C;  2MBR A;  5FXE A;  3I99 A;  4ML8 A;  5K8E A;  5FXP A;  1F0X A;  1DIQ A;  1W1S A; 
#chains in the Genus database with same CATH topology
 3FWA A;  2Q85 A;  3FW8 A;  4UD8 A;  5AE1 A;  3TSH A;  1ZR6 A;  1I19 A;  3S1D A;  3NVW B;  2Q4W A;  4XLO A;  1WYG A;  1N60 C;  3D2H A;  2VFS A;  2QPM A;  3EUB 3;  2AXR A;  4PVE A;  3EJD B;  4JB1 A;  3S1E A;  1AHZ A;  5HMR A;  2Y4G A;  3HSU A;  1VAO A;  3NVZ B;  1QLU A;  2VFT A;  3DQ0 A;  5HHZ A;  2VFU A;  3NVY B;  2E3T A;  3W8W A;  2UUV A;  2PLI A;  1FFV C;  4PZF A;  2RK5 A;  2P13 A;  1E8G A;  1V97 A;  4PVK A;  3AN1 A;  1WVE A;  5L6G A;  5G5H B;  1JRP A;  4EC3 A;  1MBB A;  1HSK A;  2UUU A;  3HRD C;  2W3S A;  1T3Q C;  3AMZ A;  2Y3S A;  4BBY A;  2VAO A;  3FW9 A;  4PVJ A;  3TSJ A;  3W8X A;  1E8H A;  2Y08 A;  1RM6 B;  3NVV B;  3TX1 A;  3SR6 B;  3POP A;  1QLT A;  1AHU A;  2O3G A;  4ZOH B;  1JRO A;  2EXR A;  3D2J A;  1N63 C;  3BW7 A;  1UXY A;  2QKN A;  1FIQ B;  1FFU C;  1N5X A;  1W1M A;  2WDW A;  4BC9 A;  5FXD A;  2NQW A;  1MBT A;  2IPI A;  4O95 A;  5ADZ A;  2Y3R A;  2P4P A;  5I1V A;  2BVH A;  2P3H A;  1VDV A;  1W1R A;  3NRZ B;  1W1K A;  3S1F A;  3DED A;  4MLA A;  4DNS A;  2GQT A;  2VFR A;  4PWB A;  4JAY A;  3RJA A;  2W3R A;  3W8Z A;  2W55 A;  1E0Y A;  3C0P A;  4PYT A;  5I1W A;  3LLB A;  5AWV A;  3JS8 A;  2GQU A;  3EJB B;  1E8F A;  4OAL A;  3B9J B;  1N5W C;  4BC7 A;  1SB3 B;  3ETR B;  1AHV A;  5AE3 A;  5D79 A;  2R2Z A;  3RJ8 A;  2OAI A;  3NS1 B;  4HG0 A;  3D2D A;  2I0K A;  3EJE B;  3PM9 A;  5FXF A;  3LAE A;  5G5G B;  3KJM A;  5L6F A;  1WVF A;  3PQB A;  1ZXI C;  1DZN A;  2BVG A;  4BCA A;  1DII A;  2W54 A;  3S1C A;  3VTE A;  1N61 C;  4PVH A;  1W1J A;  2BVF A;  1W1Q A;  3FW7 A;  2YVS A;  5HQX A;  1FO4 A;  1W1L A;  2PLS A;  1W1O A;  2VFV A;  3GSY A;  4PWC A;  5AE2 A;  3AM9 A;  2R8D A;  1N62 C;  2MBR A;  5FXE A;  3I99 A;  4ML8 A;  5K8E A;  5FXP A;  1F0X A;  1DIQ A;  1W1S A; 
#chains in the Genus database with same CATH homology
 3FWA A;  2Q85 A;  3FW8 A;  4UD8 A;  5AE1 A;  3TSH A;  1ZR6 A;  1I19 A;  3S1D A;  3NVW B;  2Q4W A;  4XLO A;  1WYG A;  1N60 C;  3D2H A;  2VFS A;  2QPM A;  3EUB 3;  2AXR A;  4PVE A;  5HMR A;  4JB1 A;  3S1E A;  1AHZ A;  2Y4G A;  3HSU A;  1VAO A;  3NVZ B;  1QLU A;  2VFT A;  3DQ0 A;  5HHZ A;  2VFU A;  3NVY B;  2E3T A;  3W8W A;  2UUV A;  2PLI A;  1FFV C;  4PZF A;  2RK5 A;  2P13 A;  1E8G A;  1V97 A;  4PVK A;  3AN1 A;  1WVE A;  5L6G A;  5G5H B;  1JRP A;  4EC3 A;  1MBB A;  1HSK A;  2UUU A;  3HRD C;  2W3S A;  1T3Q C;  3AMZ A;  2Y3S A;  4BBY A;  2VAO A;  3FW9 A;  4PVJ A;  3TSJ A;  3W8X A;  1E8H A;  2Y08 A;  1RM6 B;  3NVV B;  3TX1 A;  3SR6 B;  3POP A;  1QLT A;  1AHU A;  2O3G A;  4ZOH B;  1JRO A;  2EXR A;  3D2J A;  1N63 C;  3BW7 A;  1UXY A;  2QKN A;  1FIQ B;  1FFU C;  1N5X A;  1W1M A;  2WDW A;  4BC9 A;  5FXD A;  2NQW A;  1MBT A;  2IPI A;  4O95 A;  5ADZ A;  2Y3R A;  2P4P A;  5I1V A;  2BVH A;  2P3H A;  1VDV A;  1W1R A;  3NRZ B;  1W1K A;  3S1F A;  3DED A;  4MLA A;  4DNS A;  2GQT A;  2VFR A;  4PWB A;  4JAY A;  3RJA A;  2W3R A;  3W8Z A;  2W55 A;  1E0Y A;  3C0P A;  4PYT A;  5I1W A;  3LLB A;  5AWV A;  3JS8 A;  2GQU A;  1E8F A;  4OAL A;  3B9J B;  1N5W C;  4BC7 A;  1SB3 B;  3ETR B;  1AHV A;  5AE3 A;  5D79 A;  2R2Z A;  3RJ8 A;  2OAI A;  3NS1 B;  4HG0 A;  3D2D A;  2I0K A;  3PM9 A;  5FXF A;  3LAE A;  5G5G B;  3KJM A;  5L6F A;  1WVF A;  3PQB A;  1ZXI C;  1DZN A;  2BVG A;  4BCA A;  1DII A;  2W54 A;  3S1C A;  3VTE A;  1N61 C;  4PVH A;  1W1J A;  2BVF A;  1W1Q A;  3FW7 A;  2YVS A;  5HQX A;  1FO4 A;  1W1L A;  2PLS A;  1W1O A;  2VFV A;  3GSY A;  4PWC A;  5AE2 A;  3AM9 A;  2R8D A;  1N62 C;  2MBR A;  5FXE A;  3I99 A;  4ML8 A;  5K8E A;  5FXP A;  1F0X A;  1DIQ A;  1W1S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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