The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
76
|
sequence length |
213
|
structure length |
213
|
Chain Sequence |
HMARNYAYPHMNTLKNKHNIMSTKKLAHVCEHYAKKAIINLNKEPLPQKFDSSYLKYIHQRLFESTFEWAGYTRDFSFTFDDGTVAEMPMMKVPNLDIFYVQGNDIQENLKKFDQLLASKNNLQGLSREEFVDEAAKLFVFLNSIAPFRAGNEPTQRVFFEKLAEAAGHQLDFSVATEKRIMRACIDGMTLKDNMAYKEMKSLFEDISDPKKI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Protein binding
|
| molecule keywords |
Bartonella effector protein (Bep) substrate of VirB T4SS
|
| publication title |
Crystal Structure of the N-terminal FIC domain of Bep8 protein (VirB-translocated Bartonella effector protein) from Bartonella sp. 1-1C
rcsb |
| source organism |
Bartonella sp. 1-1c
|
| total genus |
76
|
| structure length |
213
|
| sequence length |
213
|
| chains with identical sequence |
B, C, D, E, F, G, H, I, J
|
| ec nomenclature | |
| pdb deposition date | 2014-03-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02661 | Fic | Fic/DOC family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Fic-like fold | Fido-like domain |
#chains in the Genus database with same CATH superfamily 4U0U A; 2VY3 A; 3SE5 A; 4PY3 A; 4U07 A; 3SN9 A; 3SHG A; 4N67 A; 2F6S A; 5CMT A; 4ITR A; 4X2D A; 3N3U A; 5JJ6 A; 4U04 A; 4U0S A; 2G03 A; 4WGJ A; 5CKL A; 3ZCB A; 3LET A; 5EU0 A; 4LU4 A; 3ZC7 A; 3ZLM A; 3CUC A; 2JK8 A; 5JFF A; 2VZA A; 4X2E A; 4XI8 A; 4NPS A; 5JFZ A; 5CGL A; 5JJ7 A; 4M16 A; 3S6A A; 4X2C A; 4U0Z A; #chains in the Genus database with same CATH topology 4U0U A; 2VY3 A; 3SE5 A; 4PY3 A; 4U07 A; 3SN9 A; 3SHG A; 2NUN A; 4N67 A; 2F6S A; 5CMT A; 4ITR A; 4X2D A; 2NUD A; 3N3U A; 5JJ6 A; 4U04 A; 4U0S A; 2G03 A; 4WGJ A; 5CKL A; 3ZCB A; 3LET A; 5EU0 A; 4LU4 A; 3ZC7 A; 3ZLM A; 3CUC A; 2JK8 A; 5JFF A; 1NH1 A; 2VZA A; 4X2E A; 4XI8 A; 4NPS A; 5JFZ A; 5CGL A; 5JJ7 A; 4M16 A; 3S6A A; 4X2C A; 4U0Z A; #chains in the Genus database with same CATH homology 4U0U A; 2VY3 A; 3SE5 A; 4PY3 A; 4U07 A; 3SN9 A; 3SHG A; 4N67 A; 2F6S A; 5CMT A; 4ITR A; 4X2D A; 3N3U A; 5JJ6 A; 4U04 A; 4U0S A; 2G03 A; 4WGJ A; 5CKL A; 3ZCB A; 3LET A; 5EU0 A; 4LU4 A; 3ZC7 A; 3ZLM A; 3CUC A; 2JK8 A; 5JFF A; 2VZA A; 4X2E A; 4XI8 A; 4NPS A; 5JFZ A; 5CGL A; 5JJ7 A; 4M16 A; 3S6A A; 4X2C A; 4U0Z A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
