4PY9A

Crystal structure of an exopolyphosphatase-related protein from bacteroides fragilis. northeast structural genomics target bfr192
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
342
structure length
340
Chain Sequence
b'LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSALISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFYGTMEEAVKVFEQALEKYKPLLKE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Putative exopolyphosphatase-related protein
publication title Crystal structure of an exopolyphosphatase-related protein from Bacteroides Fragilis. Northeast Structural Genomics target BFR192
rcsb
source organism Bacteroides fragilis
molecule tags Unknown function
total genus 106
structure length 340
sequence length 342
ec nomenclature
pdb deposition date 2014-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.30 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4py9A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 4py9A01
2EB0A 1I74A 3DEVA 1IR6A 1WPNA 2HAWA 2IW4A 2QB8A 1WPMA 4LS9A 1K20A 4PY9A 1WPPA 1K23A 3W5WA 2QB6A 2QB7A 2ZXOA 2ENXA 2ZXRA 2ZXPA 4RPAA
chains in the Genus database with same CATH superfamily
1YM5A 1U0KA 2LT2A 4GL6A 1WPNA 2GKEA 5GL2A 2IW4A 4LG3A 4LS9A 2KPTA 5H2YA 3W5WA 1GQZA 2Q9JA 2YMAA 4K7XA 3EJXA 2PVZA 1S7JA 1BWZA 3PW9A 3EKMA 2EB0A 2MPBA 1I74A 4Q60A 5GL4A 3DEVA 3PTJA 2HAWA 2QB8A 5H2GA 5ANPA 1WPPA 3EDNA 2QB7A 4DWZA 4JD7A 1XUAA 1SDJA 5M47A 2H9FA 2PW0A 2AZPA 4JUUA 4RPAA 3G98A 4J9XA 3IGHX 1U1XA 5GL3A 1W61A 5HA4A 3ICJA 1WPMA 1K20A 1XUBA 4JCIA 4K7GB 1K23A 5GKXA 2Q9HA 2ZXOA 1QY9A 1QYAA 4FC5A 2ZXPA 1T6KA 1U1WA 2GKJA 3G7KA 4J9WA 1IR6A 4K8LA 1W62A 4PY9A 5IWEA 4IJZA 2ZVFA 2QB6A 3PVHA 4DUNA 2ENXA 4LB0A 2ZXRA 3FVEA 4OA3A 4JBDA 3WQZA 1U1VA 4IK0A 1TM0A 2OTNA 4Q2HA 2KW7A
chains in the Genus database with same CATH topology
1YM5A 1U0KA 2LT2A 4GL6A 1WPNA 2GKEA 5GL2A 2IW4A 4LG3A 4LS9A 2KPTA 5H2YA 3W5WA 1GQZA 2Q9JA 2YMAA 4K7XA 3EJXA 2PVZA 1S7JA 1BWZA 3PW9A 3EKMA 2EB0A 2MPBA 1I74A 4Q60A 5GL4A 3DEVA 3PTJA 2HAWA 2QB8A 5H2GA 5ANPA 1WPPA 3EDNA 2QB7A 4DWZA 4JD7A 1XUAA 1SDJA 5M47A 2H9FA 2PW0A 2AZPA 4JUUA 4RPAA 3G98A 4J9XA 3IGHX 1U1XA 5GL3A 1W61A 5HA4A 3ICJA 1WPMA 1K20A 1XUBA 4JCIA 4K7GB 1K23A 5GKXA 2Q9HA 2ZXOA 1QY9A 1QYAA 4FC5A 2ZXPA 1T6KA 1U1WA 2GKJA 3G7KA 4J9WA 1IR6A 4K8LA 1W62A 4PY9A 5IWEA 4IJZA 2ZVFA 2QB6A 3PVHA 4DUNA 2ENXA 4LB0A 2ZXRA 3FVEA 4OA3A 4JBDA 3WQZA 1U1VA 4IK0A 1TM0A 2OTNA 4Q2HA 2KW7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EB0 A;  1I74 A;  3DEV A;  1IR6 A;  1WPN A;  2HAW A;  2IW4 A;  2QB8 A;  1WPM A;  4LS9 A;  1K20 A;  4PY9 A;  1WPP A;  1K23 A;  3W5W A;  2QB6 A;  2QB7 A;  2ZXO A;  2ENX A;  2ZXR A;  2ZXP A;  4RPA A; 
#chains in the Genus database with same CATH topology
 1YM5 A;  1U0K A;  2LT2 A;  4GL6 A;  1WPN A;  2GKE A;  5GL2 A;  2IW4 A;  4LG3 A;  4LS9 A;  2KPT A;  5H2Y A;  3W5W A;  1GQZ A;  2Q9J A;  2YMA A;  4K7X A;  3EJX A;  2PVZ A;  1S7J A;  1BWZ A;  3PW9 A;  3EKM A;  2EB0 A;  2MPB A;  1I74 A;  4Q60 A;  5GL4 A;  3DEV A;  3PTJ A;  2HAW A;  2QB8 A;  5H2G A;  5ANP A;  1WPP A;  3EDN A;  2QB7 A;  4DWZ A;  4JD7 A;  1XUA A;  1SDJ A;  5M47 A;  2H9F A;  2PW0 A;  2AZP A;  4JUU A;  4RPA A;  3G98 A;  4J9X A;  3IGH X;  1U1X A;  5GL3 A;  1W61 A;  5HA4 A;  3ICJ A;  1WPM A;  1K20 A;  1XUB A;  4JCI A;  4K7G B;  1K23 A;  5GKX A;  2Q9H A;  2ZXO A;  1QY9 A;  1QYA A;  4FC5 A;  2ZXP A;  1T6K A;  1U1W A;  2GKJ A;  3G7K A;  4J9W A;  1IR6 A;  4K8L A;  1W62 A;  4PY9 A;  5IWE A;  4IJZ A;  2ZVF A;  2QB6 A;  3PVH A;  4DUN A;  2ENX A;  4LB0 A;  2ZXR A;  3FVE A;  4OA3 A;  4JBD A;  3WQZ A;  1U1V A;  4IK0 A;  1TM0 A;  2OTN A;  4Q2H A;  2KW7 A; 
#chains in the Genus database with same CATH homology
 1YM5 A;  1U0K A;  2LT2 A;  4GL6 A;  1WPN A;  2GKE A;  5GL2 A;  2IW4 A;  4LG3 A;  4LS9 A;  2KPT A;  5H2Y A;  3W5W A;  1GQZ A;  2Q9J A;  2YMA A;  4K7X A;  3EJX A;  2PVZ A;  1S7J A;  1BWZ A;  3PW9 A;  3EKM A;  2EB0 A;  2MPB A;  1I74 A;  4Q60 A;  5GL4 A;  3DEV A;  3PTJ A;  2HAW A;  2QB8 A;  5H2G A;  5ANP A;  1WPP A;  3EDN A;  2QB7 A;  4DWZ A;  4JD7 A;  1XUA A;  1SDJ A;  5M47 A;  2H9F A;  2PW0 A;  2AZP A;  4JUU A;  4RPA A;  3G98 A;  4J9X A;  3IGH X;  1U1X A;  5GL3 A;  1W61 A;  5HA4 A;  3ICJ A;  1WPM A;  1K20 A;  1XUB A;  4JCI A;  4K7G B;  1K23 A;  5GKX A;  2Q9H A;  2ZXO A;  1QY9 A;  1QYA A;  4FC5 A;  2ZXP A;  1T6K A;  1U1W A;  2GKJ A;  3G7K A;  4J9W A;  1IR6 A;  4K8L A;  1W62 A;  4PY9 A;  5IWE A;  4IJZ A;  2ZVF A;  2QB6 A;  3PVH A;  4DUN A;  2ENX A;  4LB0 A;  2ZXR A;  3FVE A;  4OA3 A;  4JBD A;  3WQZ A;  1U1V A;  4IK0 A;  1TM0 A;  2OTN A;  4Q2H A;  2KW7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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