4PY9A

Crystal structure of an exopolyphosphatase-related protein from bacteroides fragilis. northeast structural genomics target bfr192
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
342
structure length
340
Chain Sequence
LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSALISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFYGTMEEAVKVFEQALEKYKPLLKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an exopolyphosphatase-related protein from Bacteroides Fragilis. Northeast Structural Genomics target BFR192
rcsb
source organism Bacteroides fragilis
molecule tags Unknown function
molecule keywords Putative exopolyphosphatase-related protein
total genus 106
structure length 340
sequence length 342
ec nomenclature
pdb deposition date 2014-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.30 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4py9A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 4py9A01
2QB8A 1WPPA 1IR6A 2ENXA 4LS9A 2EB0A 2IW4A 1WPMA 2ZXRA 1I74A 2HAWA 2QB7A 4RPAA 2QB6A 1K20A 3W5WA 1WPNA 3DEVA 2ZXOA 2ZXPA 1K23A 4PY9A
chains in the Genus database with same CATH superfamily
2QB8A 2Q9HA 3FVEA 4J9XA 5H2GA 1SDJA 2EB0A 1U1XA 1U0KA 1WPMA 2ZVFA 4JD7A 1U1WA 2KW7A 4LG3A 4RPAA 1K20A 1QYAA 3W5WA 4LB0A 5H2YA 4JUUA 4JBDA 4FC5A 2OTNA 5GL4A 2GKEA 3EKMA 1S7JA 1BWZA 1XUAA 2GKJA 2AZPA 4K7GB 5GKXA 2Q9JA 3ICJA 2YMAA 2LT2A 4Q60A 3PW9A 5ANPA 3PTJA 3IGHX 2ZXRA 2HAWA 1XUBA 2QB6A 1W62A 3DEVA 4IJZA 2ZXOA 5GL2A 4PY9A 3PVHA 3G7KA 4IK0A 4K8LA 1WPPA 1IR6A 1QY9A 2H9FA 4LS9A 3EJXA 1U1VA 4K7XA 5GL3A 4DUNA 3WQZA 4DWZA 4GL6A 2MPBA 2PVZA 5HA4A 4OA3A 5IWEA 4Q2HA 1YM5A 2KPTA 3G98A 2ENXA 2IW4A 1W61A 4JCIA 2PW0A 1I74A 2QB7A 3EDNA 4J9WA 5M47A 1WPNA 1T6KA 1TM0A 2ZXPA 1K23A 1GQZA
chains in the Genus database with same CATH topology
2QB8A 2Q9HA 3FVEA 4J9XA 5H2GA 1SDJA 2EB0A 1U1XA 1U0KA 1WPMA 2ZVFA 4JD7A 1U1WA 2KW7A 4LG3A 4RPAA 1K20A 1QYAA 3W5WA 4LB0A 5H2YA 4JUUA 4JBDA 4FC5A 2OTNA 5GL4A 2GKEA 3EKMA 1S7JA 1BWZA 1XUAA 2GKJA 2AZPA 4K7GB 5GKXA 2Q9JA 3ICJA 2YMAA 2LT2A 4Q60A 3PW9A 5ANPA 3PTJA 3IGHX 2ZXRA 2HAWA 1XUBA 2QB6A 1W62A 3DEVA 4IJZA 2ZXOA 5GL2A 4PY9A 3PVHA 3G7KA 4IK0A 4K8LA 1WPPA 1IR6A 1QY9A 2H9FA 4LS9A 3EJXA 1U1VA 4K7XA 5GL3A 4DUNA 3WQZA 4DWZA 4GL6A 2MPBA 2PVZA 5HA4A 4OA3A 5IWEA 4Q2HA 1YM5A 2KPTA 3G98A 2ENXA 2IW4A 1W61A 4JCIA 2PW0A 1I74A 2QB7A 3EDNA 4J9WA 5M47A 1WPNA 1T6KA 1TM0A 2ZXPA 1K23A 1GQZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QB8 A;  1WPP A;  1IR6 A;  2ENX A;  4LS9 A;  2EB0 A;  2IW4 A;  1WPM A;  2ZXR A;  1I74 A;  2HAW A;  2QB7 A;  4RPA A;  2QB6 A;  1K20 A;  3W5W A;  1WPN A;  3DEV A;  2ZXO A;  2ZXP A;  1K23 A;  4PY9 A; 
#chains in the Genus database with same CATH topology
 2QB8 A;  2Q9H A;  3FVE A;  4J9X A;  5H2G A;  1SDJ A;  2EB0 A;  1U1X A;  1U0K A;  1WPM A;  2ZVF A;  4JD7 A;  1U1W A;  2KW7 A;  4LG3 A;  4RPA A;  1K20 A;  1QYA A;  3W5W A;  4LB0 A;  5H2Y A;  4JUU A;  4JBD A;  4FC5 A;  2OTN A;  5GL4 A;  2GKE A;  3EKM A;  1S7J A;  1BWZ A;  1XUA A;  2GKJ A;  2AZP A;  4K7G B;  5GKX A;  2Q9J A;  3ICJ A;  2YMA A;  2LT2 A;  4Q60 A;  3PW9 A;  5ANP A;  3PTJ A;  3IGH X;  2ZXR A;  2HAW A;  1XUB A;  2QB6 A;  1W62 A;  3DEV A;  4IJZ A;  2ZXO A;  5GL2 A;  4PY9 A;  3PVH A;  3G7K A;  4IK0 A;  4K8L A;  1WPP A;  1IR6 A;  1QY9 A;  2H9F A;  4LS9 A;  3EJX A;  1U1V A;  4K7X A;  5GL3 A;  4DUN A;  3WQZ A;  4DWZ A;  4GL6 A;  2MPB A;  2PVZ A;  5HA4 A;  4OA3 A;  5IWE A;  4Q2H A;  1YM5 A;  2KPT A;  3G98 A;  2ENX A;  2IW4 A;  1W61 A;  4JCI A;  2PW0 A;  1I74 A;  2QB7 A;  3EDN A;  4J9W A;  5M47 A;  1WPN A;  1T6K A;  1TM0 A;  2ZXP A;  1K23 A;  1GQZ A; 
#chains in the Genus database with same CATH homology
 2QB8 A;  2Q9H A;  3FVE A;  4J9X A;  5H2G A;  1SDJ A;  2EB0 A;  1U1X A;  1U0K A;  1WPM A;  2ZVF A;  4JD7 A;  1U1W A;  2KW7 A;  4LG3 A;  4RPA A;  1K20 A;  1QYA A;  3W5W A;  4LB0 A;  5H2Y A;  4JUU A;  4JBD A;  4FC5 A;  2OTN A;  5GL4 A;  2GKE A;  3EKM A;  1S7J A;  1BWZ A;  1XUA A;  2GKJ A;  2AZP A;  4K7G B;  5GKX A;  2Q9J A;  3ICJ A;  2YMA A;  2LT2 A;  4Q60 A;  3PW9 A;  5ANP A;  3PTJ A;  3IGH X;  2ZXR A;  2HAW A;  1XUB A;  2QB6 A;  1W62 A;  3DEV A;  4IJZ A;  2ZXO A;  5GL2 A;  4PY9 A;  3PVH A;  3G7K A;  4IK0 A;  4K8L A;  1WPP A;  1IR6 A;  1QY9 A;  2H9F A;  4LS9 A;  3EJX A;  1U1V A;  4K7X A;  5GL3 A;  4DUN A;  3WQZ A;  4DWZ A;  4GL6 A;  2MPB A;  2PVZ A;  5HA4 A;  4OA3 A;  5IWE A;  4Q2H A;  1YM5 A;  2KPT A;  3G98 A;  2ENX A;  2IW4 A;  1W61 A;  4JCI A;  2PW0 A;  1I74 A;  2QB7 A;  3EDN A;  4J9W A;  5M47 A;  1WPN A;  1T6K A;  1TM0 A;  2ZXP A;  1K23 A;  1GQZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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