4PY9A

Crystal structure of an exopolyphosphatase-related protein from bacteroides fragilis. northeast structural genomics target bfr192
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
342
structure length
340
Chain Sequence
LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSALISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFYGTMEEAVKVFEQALEKYKPLLKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Putative exopolyphosphatase-related protein
publication title Crystal structure of an exopolyphosphatase-related protein from Bacteroides Fragilis. Northeast Structural Genomics target BFR192
rcsb
source organism Bacteroides fragilis
total genus 106
structure length 340
sequence length 342
ec nomenclature
pdb deposition date 2014-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.30 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4py9A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 4py9A01
2ENXA 4RPAA 4LS9A 1K23A 1WPPA 2EB0A 4PY9A 2ZXRA 2IW4A 3DEVA 1WPNA 2HAWA 1WPMA 2QB6A 1I74A 2QB7A 1K20A 2ZXOA 3W5WA 2ZXPA 2QB8A 1IR6A
chains in the Genus database with same CATH superfamily
1W61A 1XUBA 1K23A 4IJZA 1YM5A 4DUNA 4GL6A 1WPNA 1XUAA 1QYAA 1U0KA 2HAWA 3WQZA 3G7KA 3FVEA 2YMAA 1S7JA 4JBDA 2ENXA 2AZPA 1U1VA 4J9WA 1T6KA 2EB0A 4K7XA 4LG3A 3PTJA 5GL3A 1U1XA 2Q9HA 3EJXA 4OA3A 2QB6A 4Q2HA 4Q60A 2PVZA 3EKMA 5GL2A 5IWEA 2QB7A 5GKXA 2PW0A 4RPAA 4LS9A 1BWZA 4K8LA 4DWZA 1QY9A 4JD7A 3G98A 2KW7A 3PW9A 2MPBA 2GKEA 5M47A 2IW4A 4IK0A 5H2GA 1WPMA 4J9XA 1I74A 4LB0A 4JUUA 3ICJA 5H2YA 2ZXOA 3W5WA 1W62A 2H9FA 3PVHA 1IR6A 2LT2A 1GQZA 3IGHX 1TM0A 1WPPA 4PY9A 1U1WA 1SDJA 5ANPA 2ZVFA 2ZXRA 3DEVA 2KPTA 4K7GB 5HA4A 2GKJA 5GL4A 4FC5A 2OTNA 3EDNA 1K20A 2ZXPA 2Q9JA 2QB8A 4JCIA
chains in the Genus database with same CATH topology
1W61A 1XUBA 1K23A 4IJZA 1YM5A 4DUNA 4GL6A 1WPNA 1XUAA 1QYAA 1U0KA 2HAWA 3WQZA 3G7KA 3FVEA 2YMAA 1S7JA 4JBDA 2ENXA 2AZPA 1U1VA 4J9WA 1T6KA 2EB0A 4K7XA 4LG3A 3PTJA 5GL3A 1U1XA 2Q9HA 3EJXA 4OA3A 2QB6A 4Q2HA 4Q60A 2PVZA 3EKMA 5GL2A 5IWEA 2QB7A 5GKXA 2PW0A 4RPAA 4LS9A 1BWZA 4K8LA 4DWZA 1QY9A 4JD7A 3G98A 2KW7A 3PW9A 2MPBA 2GKEA 5M47A 2IW4A 4IK0A 5H2GA 1WPMA 4J9XA 1I74A 4LB0A 4JUUA 3ICJA 5H2YA 2ZXOA 3W5WA 1W62A 2H9FA 3PVHA 1IR6A 2LT2A 1GQZA 3IGHX 1TM0A 1WPPA 4PY9A 1U1WA 1SDJA 5ANPA 2ZVFA 2ZXRA 3DEVA 2KPTA 4K7GB 5HA4A 2GKJA 5GL4A 4FC5A 2OTNA 3EDNA 1K20A 2ZXPA 2Q9JA 2QB8A 4JCIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ENX A;  4RPA A;  4LS9 A;  1K23 A;  1WPP A;  2EB0 A;  4PY9 A;  2ZXR A;  2IW4 A;  3DEV A;  1WPN A;  2HAW A;  1WPM A;  2QB6 A;  1I74 A;  2QB7 A;  1K20 A;  2ZXO A;  3W5W A;  2ZXP A;  2QB8 A;  1IR6 A; 
#chains in the Genus database with same CATH topology
 1W61 A;  1XUB A;  1K23 A;  4IJZ A;  1YM5 A;  4DUN A;  4GL6 A;  1WPN A;  1XUA A;  1QYA A;  1U0K A;  2HAW A;  3WQZ A;  3G7K A;  3FVE A;  2YMA A;  1S7J A;  4JBD A;  2ENX A;  2AZP A;  1U1V A;  4J9W A;  1T6K A;  2EB0 A;  4K7X A;  4LG3 A;  3PTJ A;  5GL3 A;  1U1X A;  2Q9H A;  3EJX A;  4OA3 A;  2QB6 A;  4Q2H A;  4Q60 A;  2PVZ A;  3EKM A;  5GL2 A;  5IWE A;  2QB7 A;  5GKX A;  2PW0 A;  4RPA A;  4LS9 A;  1BWZ A;  4K8L A;  4DWZ A;  1QY9 A;  4JD7 A;  3G98 A;  2KW7 A;  3PW9 A;  2MPB A;  2GKE A;  5M47 A;  2IW4 A;  4IK0 A;  5H2G A;  1WPM A;  4J9X A;  1I74 A;  4LB0 A;  4JUU A;  3ICJ A;  5H2Y A;  2ZXO A;  3W5W A;  1W62 A;  2H9F A;  3PVH A;  1IR6 A;  2LT2 A;  1GQZ A;  3IGH X;  1TM0 A;  1WPP A;  4PY9 A;  1U1W A;  1SDJ A;  5ANP A;  2ZVF A;  2ZXR A;  3DEV A;  2KPT A;  4K7G B;  5HA4 A;  2GKJ A;  5GL4 A;  4FC5 A;  2OTN A;  3EDN A;  1K20 A;  2ZXP A;  2Q9J A;  2QB8 A;  4JCI A; 
#chains in the Genus database with same CATH homology
 1W61 A;  1XUB A;  1K23 A;  4IJZ A;  1YM5 A;  4DUN A;  4GL6 A;  1WPN A;  1XUA A;  1QYA A;  1U0K A;  2HAW A;  3WQZ A;  3G7K A;  3FVE A;  2YMA A;  1S7J A;  4JBD A;  2ENX A;  2AZP A;  1U1V A;  4J9W A;  1T6K A;  2EB0 A;  4K7X A;  4LG3 A;  3PTJ A;  5GL3 A;  1U1X A;  2Q9H A;  3EJX A;  4OA3 A;  2QB6 A;  4Q2H A;  4Q60 A;  2PVZ A;  3EKM A;  5GL2 A;  5IWE A;  2QB7 A;  5GKX A;  2PW0 A;  4RPA A;  4LS9 A;  1BWZ A;  4K8L A;  4DWZ A;  1QY9 A;  4JD7 A;  3G98 A;  2KW7 A;  3PW9 A;  2MPB A;  2GKE A;  5M47 A;  2IW4 A;  4IK0 A;  5H2G A;  1WPM A;  4J9X A;  1I74 A;  4LB0 A;  4JUU A;  3ICJ A;  5H2Y A;  2ZXO A;  3W5W A;  1W62 A;  2H9F A;  3PVH A;  1IR6 A;  2LT2 A;  1GQZ A;  3IGH X;  1TM0 A;  1WPP A;  4PY9 A;  1U1W A;  1SDJ A;  5ANP A;  2ZVF A;  2ZXR A;  3DEV A;  2KPT A;  4K7G B;  5HA4 A;  2GKJ A;  5GL4 A;  4FC5 A;  2OTN A;  3EDN A;  1K20 A;  2ZXP A;  2Q9J A;  2QB8 A;  4JCI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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