4PY9A

Crystal structure of an exopolyphosphatase-related protein from bacteroides fragilis. northeast structural genomics target bfr192
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
342
structure length
340
Chain Sequence
LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSALISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFYGTMEEAVKVFEQALEKYKPLLKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an exopolyphosphatase-related protein from Bacteroides Fragilis. Northeast Structural Genomics target BFR192
rcsb
source organism Bacteroides fragilis
molecule tags Unknown function
molecule keywords Putative exopolyphosphatase-related protein
total genus 106
structure length 340
sequence length 342
ec nomenclature
pdb deposition date 2014-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.30 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4py9A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 4py9A01
2HAWA 4PY9A 1WPNA 2EB0A 1WPPA 2IW4A 2ZXPA 3W5WA 1IR6A 1K23A 2QB8A 2QB7A 1K20A 2QB6A 4LS9A 1I74A 1WPMA 4RPAA 3DEVA 2ZXOA 2ZXRA 2ENXA
chains in the Genus database with same CATH superfamily
2HAWA 4OA3A 2LT2A 4IJZA 2Q9HA 3PTJA 2AZPA 3ICJA 3WQZA 1YM5A 3G7KA 1WPPA 3PVHA 2KPTA 4GL6A 3IGHX 2QB8A 3PW9A 2PVZA 1K20A 1GQZA 1W62A 1U0KA 1WPMA 3EDNA 5M47A 2ZXOA 1SDJA 4J9XA 1U1XA 2EB0A 2IW4A 4Q60A 4K8LA 1IR6A 2QB7A 4J9WA 5GKXA 4LG3A 4LS9A 2KW7A 2H9FA 4LB0A 5H2YA 5GL4A 3DEVA 4JUUA 5H2GA 2YMAA 4Q2HA 5HA4A 4PY9A 3FVEA 4JD7A 5GL2A 1W61A 5ANPA 1U1VA 2GKEA 4JBDA 1XUAA 4JCIA 2Q9JA 1QYAA 2QB6A 1XUBA 5IWEA 2ZXRA 5GL3A 4FC5A 2ENXA 4IK0A 3G98A 2MPBA 1WPNA 4K7XA 1QY9A 4DUNA 2ZXPA 3W5WA 1TM0A 1K23A 1BWZA 2GKJA 1S7JA 4K7GB 2ZVFA 1I74A 4DWZA 2PW0A 1T6KA 4RPAA 1U1WA 3EKMA 2OTNA 3EJXA
chains in the Genus database with same CATH topology
2HAWA 4OA3A 2LT2A 4IJZA 2Q9HA 3PTJA 2AZPA 3ICJA 3WQZA 1YM5A 3G7KA 1WPPA 3PVHA 2KPTA 4GL6A 3IGHX 2QB8A 3PW9A 2PVZA 1K20A 1GQZA 1W62A 1U0KA 1WPMA 3EDNA 5M47A 2ZXOA 1SDJA 4J9XA 1U1XA 2EB0A 2IW4A 4Q60A 4K8LA 1IR6A 2QB7A 4J9WA 5GKXA 4LG3A 4LS9A 2KW7A 2H9FA 4LB0A 5H2YA 5GL4A 3DEVA 4JUUA 5H2GA 2YMAA 4Q2HA 5HA4A 4PY9A 3FVEA 4JD7A 5GL2A 1W61A 5ANPA 1U1VA 2GKEA 4JBDA 1XUAA 4JCIA 2Q9JA 1QYAA 2QB6A 1XUBA 5IWEA 2ZXRA 5GL3A 4FC5A 2ENXA 4IK0A 3G98A 2MPBA 1WPNA 4K7XA 1QY9A 4DUNA 2ZXPA 3W5WA 1TM0A 1K23A 1BWZA 2GKJA 1S7JA 4K7GB 2ZVFA 1I74A 4DWZA 2PW0A 1T6KA 4RPAA 1U1WA 3EKMA 2OTNA 3EJXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HAW A;  4PY9 A;  1WPN A;  2EB0 A;  1WPP A;  2IW4 A;  2ZXP A;  3W5W A;  1IR6 A;  1K23 A;  2QB8 A;  2QB7 A;  1K20 A;  2QB6 A;  4LS9 A;  1I74 A;  1WPM A;  4RPA A;  3DEV A;  2ZXO A;  2ZXR A;  2ENX A; 
#chains in the Genus database with same CATH topology
 2HAW A;  4OA3 A;  2LT2 A;  4IJZ A;  2Q9H A;  3PTJ A;  2AZP A;  3ICJ A;  3WQZ A;  1YM5 A;  3G7K A;  1WPP A;  3PVH A;  2KPT A;  4GL6 A;  3IGH X;  2QB8 A;  3PW9 A;  2PVZ A;  1K20 A;  1GQZ A;  1W62 A;  1U0K A;  1WPM A;  3EDN A;  5M47 A;  2ZXO A;  1SDJ A;  4J9X A;  1U1X A;  2EB0 A;  2IW4 A;  4Q60 A;  4K8L A;  1IR6 A;  2QB7 A;  4J9W A;  5GKX A;  4LG3 A;  4LS9 A;  2KW7 A;  2H9F A;  4LB0 A;  5H2Y A;  5GL4 A;  3DEV A;  4JUU A;  5H2G A;  2YMA A;  4Q2H A;  5HA4 A;  4PY9 A;  3FVE A;  4JD7 A;  5GL2 A;  1W61 A;  5ANP A;  1U1V A;  2GKE A;  4JBD A;  1XUA A;  4JCI A;  2Q9J A;  1QYA A;  2QB6 A;  1XUB A;  5IWE A;  2ZXR A;  5GL3 A;  4FC5 A;  2ENX A;  4IK0 A;  3G98 A;  2MPB A;  1WPN A;  4K7X A;  1QY9 A;  4DUN A;  2ZXP A;  3W5W A;  1TM0 A;  1K23 A;  1BWZ A;  2GKJ A;  1S7J A;  4K7G B;  2ZVF A;  1I74 A;  4DWZ A;  2PW0 A;  1T6K A;  4RPA A;  1U1W A;  3EKM A;  2OTN A;  3EJX A; 
#chains in the Genus database with same CATH homology
 2HAW A;  4OA3 A;  2LT2 A;  4IJZ A;  2Q9H A;  3PTJ A;  2AZP A;  3ICJ A;  3WQZ A;  1YM5 A;  3G7K A;  1WPP A;  3PVH A;  2KPT A;  4GL6 A;  3IGH X;  2QB8 A;  3PW9 A;  2PVZ A;  1K20 A;  1GQZ A;  1W62 A;  1U0K A;  1WPM A;  3EDN A;  5M47 A;  2ZXO A;  1SDJ A;  4J9X A;  1U1X A;  2EB0 A;  2IW4 A;  4Q60 A;  4K8L A;  1IR6 A;  2QB7 A;  4J9W A;  5GKX A;  4LG3 A;  4LS9 A;  2KW7 A;  2H9F A;  4LB0 A;  5H2Y A;  5GL4 A;  3DEV A;  4JUU A;  5H2G A;  2YMA A;  4Q2H A;  5HA4 A;  4PY9 A;  3FVE A;  4JD7 A;  5GL2 A;  1W61 A;  5ANP A;  1U1V A;  2GKE A;  4JBD A;  1XUA A;  4JCI A;  2Q9J A;  1QYA A;  2QB6 A;  1XUB A;  5IWE A;  2ZXR A;  5GL3 A;  4FC5 A;  2ENX A;  4IK0 A;  3G98 A;  2MPB A;  1WPN A;  4K7X A;  1QY9 A;  4DUN A;  2ZXP A;  3W5W A;  1TM0 A;  1K23 A;  1BWZ A;  2GKJ A;  1S7J A;  4K7G B;  2ZVF A;  1I74 A;  4DWZ A;  2PW0 A;  1T6K A;  4RPA A;  1U1W A;  3EKM A;  2OTN A;  3EJX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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