4PYPA

Crystal structure of the human glucose transporter glut1
Total Genus 166
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
166
sequence length
447
structure length
447
Chain Sequence
TGRLMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYTQTWVHRYGESILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQVFGLDSIMGNKDLWPLLLSIIFIPALLQCIVLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTHDLQEMKEESRQMMREKKVTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVQRAGRRTLHLIGLAGMAGCAILMTIALALLEQLPWMSYLSIVAIFGFVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Solute carrier family 2, facilitated glucose transporter mem
publication title Crystal structure of the human glucose transporter GLUT1
pubmed doi rcsb
source organism Homo sapiens
total genus 166
structure length 447
sequence length 447
ec nomenclature
pdb deposition date 2014-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00083 Sugar_tr Sugar (and other) transporter
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1250.20 Mainly Alpha Up-down Bundle Growth Hormone; Chain: A; MFS general substrate transporter like domains 4pypA00
4ZWCA 4D2CA 3O7PA 4UVMA 2XUTA 4U4WA 4GC0A 1PW4A 4JR9A 2V8NA 4ZWBA 4Q65A 4GBYA 5A2NA 5EQIA 4OH3A 4PYPA 4J05A 4IKWA 1PV7A 4APSA 4D2BA 4LEPA 4IU8A 4JREA 5GXBA 3WDOA 2CFPA 4IKXA 3O7QA 4JA3A 4GBZA 2CFQA 4IKZA 5D58A 4ZYRA 4IU9A 5D59A 4XNIA 4OAAA 4YBQA 5D6KA 4XNJA 4U4VA 1PV6A 5EQHA 5EQGA 4W6VA 4TPJA 2Y5YA 5A2OA 5C65A 4U4TA 4QIQA 4IKVA 4YB9D 4D2DA 4LDSA 4ZW9A 4IKYA 4TPHA 4TPGA
chains in the Genus database with same CATH superfamily
4NEMA 4D2CA 1SCFA 4RS1A 1LQSL 4ZS7A 4PYPA 4LEPA 1N1FA 1BP3A 4DKDA 1AX8A 4EXPA 2Q7NB 2Y5YA 5FUCA 1GA3A 3DGCL 2B8ZA 3LB6B 4ZF7A 5C44D 4A3ED 4WRLB 3QWRB 3N0PA 2B5IA 2LMSA 2XUTA 2Z3RA 1EXZA 3L5XA 5A2NA 2CYKA 2R92D 4APSA 5FLMD 4A93D 5FHXA 1RW5A 1ITIA 1Z92A 4OAAA 5EQGA 3DLQI 1A7MA 3PIWA 2JA7D 4A3BD 1PY2A 1I1RB 5LQBA 5IYCD 1CD9A 1M47A 1ITLA 3SE3B 1M4CA 4IKZA 4IU9A 1RCBA 5D59A 1PGRA 1EERA 1HGUA 4ZW9A 2O26A 4TPHA 2O27A 3PO2D 3FKID 1HIKA 3L5WI 4OH3A 5EQIA 3EW3A 4A3CD 1IRLA 5D6KA 1BBNA 5C65A 5C7XA 4U4TA 4CNIC 1M4AA 1F45B 1INRA 4PS4A 4ZWCA 4U4WA 4X51A 3D85C 2B8YA 4BBSD 2B8UA 2CFPA 3HOYD 3HOZD 3QB1A 5D70A 4LRLA 4YPGC 2JA5D 3PO3D 3B5KA 3MZGA 3NCEA 1EVSA 4IKVA 2R93D 1HUWA 2O6IA 2Q14A 2D48A 5D72A 3I4MD 4TPGA 2Z3QA 3HOWD 3IRHA 3QB7A 3OQ3A 4JA3A 3H3VE 3LB6A 3N06A 4YUEC 4YDYI 1F6FA 3OG6A 1LKIA 2HYMB 3UF2A 1CNT1 3AYHA 1PW6A 2INTA 3QAZA 4J05A 3G9VB 1D9CA 5GXBA 4NN6A 1HWHA 5D22A 1D9GA 3OG4A 5L6YC 2XQBA 4TPJA 3G6DA 5KNHI 1ILKA 1FG9A 4QIQA 4YB9D 5C3ED 2VUMD 3QT2C 3DI3A 4GC0A 4GS7A 4JR9A 4ZWBA 4A3GD 4IKWA 1PV7A 1HWGA 2LAGA 3I4ND 1J7VL 1Y6KL 4D2DA 1LK3A 4FA8E 3Q1SI 4O6KA 4YQXA 4EXNA 3HMXB 4A3ID 1PW4A 1IARA 1M4BA 1ITMA 2ERJD 3UX9A 5IP7D 1WU3I 1ALUA 1QVNA 4JREA 2IL6A 3NCCA 2B63D 1V7MV 3BESL 3HOUD 1ITFA 4XNIA 3UEZE 1Y6ML 5EQHA 4W6VA 5A2OA 1AU1A 3BPOA 5IP9D 1M48A 3H0GD 4DKFA 1CN4C 3HOXD 3HHCA 1B5LA 4MHLA 4D2BA 4IU8A 4J4LC 3BPLA 4XNJA 5D28B 5E4EA 3S9DA 1PVHB 1Y14A 1RHGA 4BY7D 3NCBA 4A3FD 5C4XD 3O7PA 1BGEA 1VLKA 4GBYA 1GNCA 1HZIA 1WCMD 1IJZA 3DUHC 3SE4B 5D71A 5D58A 1Y1VD 2B91A 3EJJA 1FYHA 3VA2A 2ILKA 4NI7A 3DI2A 3D87A 1Y1WD 4BY1D 2JA8D 4DOHA 5IYDD 2E9WC 2CFQA 1KF9A 4ZYRA 4NN7A 2B8XA 1BCNA 4A3DD 4BBRD 1JLIA 4A3JD 4A3LD 4LDSA 4IKYA 2B90A 1RFBA 3TGXB 1ETEA 1YKBA 2GMFA 4NN5A 2R7ZD 1IK0A 3O7QA 1EMRA 4YBQA 1M49A 3WCYI 4GRWA 1Z7CA 1HIJA 4UVMA 1A22A 1EKUA 5TS9A 1BGCA 3D48P 3PIVA 1BGDA 4IKXA 4O9HA 4DKCA 1BUYA 1CYLA 2Q98A 1IL6A 1P9MB 1M4RA 2PSMA 2V8NA 2JA6D 1CSGA 4GBZA 4I77Z 4DKEA 1V7NV 4U4VA 4BXXD 2H24A 3NPZA 3HOVD 1HULA 3INKC 4NKQC 1AXIA 4Q65A 3BPNA 3NCFA 1NBPA 3WDOA 2C35A 2L3OA 4Z5RD 1PV6A 4A3KD 2L3YA 2D9QA 4NEJA 4A3MD 2KZ1A 5IYBD 3UF5A 1Y6NL 4NI9A 2OQPA 3HHRA
chains in the Genus database with same CATH topology
4ZWCA 4D2CA 3O7PA 4UVMA 2XUTA 4U4WA 4GC0A 1PW4A 4JR9A 2V8NA 4ZWBA 4Q65A 4GBYA 5A2NA 5EQIA 4OH3A 4PYPA 4J05A 4IKWA 1PV7A 4APSA 4D2BA 4LEPA 4IU8A 4JREA 5GXBA 3WDOA 2CFPA 4IKXA 3O7QA 4JA3A 4GBZA 2CFQA 4IKZA 5D58A 4ZYRA 4IU9A 5D59A 4XNIA 4OAAA 4YBQA 5D6KA 4XNJA 4U4VA 1PV6A 5EQHA 5EQGA 4W6VA 4TPJA 2Y5YA 5A2OA 5C65A 4U4TA 4QIQA 4IKVA 4YB9D 4D2DA 4LDSA 4ZW9A 4IKYA 4TPHA 4TPGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZWC A;  4D2C A;  3O7P A;  4UVM A;  2XUT A;  4U4W A;  4GC0 A;  1PW4 A;  4JR9 A;  2V8N A;  4ZWB A;  4Q65 A;  4GBY A;  5A2N A;  5EQI A;  4OH3 A;  4PYP A;  4J05 A;  4IKW A;  1PV7 A;  4APS A;  4D2B A;  4LEP A;  4IU8 A;  4JRE A;  5GXB A;  3WDO A;  2CFP A;  4IKX A;  3O7Q A;  4JA3 A;  4GBZ A;  2CFQ A;  4IKZ A;  5D58 A;  4ZYR A;  4IU9 A;  5D59 A;  4XNI A;  4OAA A;  4YBQ A;  5D6K A;  4XNJ A;  4U4V A;  1PV6 A;  5EQH A;  5EQG A;  4W6V A;  4TPJ A;  2Y5Y A;  5A2O A;  5C65 A;  4U4T A;  4QIQ A;  4IKV A;  4YB9 D;  4D2D A;  4LDS A;  4ZW9 A;  4IKY A;  4TPH A;  4TPG A; 
#chains in the Genus database with same CATH topology
 4NEM A;  4D2C A;  1SCF A;  4RS1 A;  1LQS L;  4ZS7 A;  4PYP A;  4LEP A;  1N1F A;  1BP3 A;  4DKD A;  1AX8 A;  4EXP A;  2Q7N B;  2Y5Y A;  5FUC A;  1GA3 A;  3DGC L;  2B8Z A;  3LB6 B;  4ZF7 A;  5C44 D;  4A3E D;  4WRL B;  3QWR B;  3N0P A;  2B5I A;  2LMS A;  2XUT A;  2Z3R A;  1EXZ A;  3L5X A;  5A2N A;  2CYK A;  2R92 D;  4APS A;  5FLM D;  4A93 D;  5FHX A;  1RW5 A;  1ITI A;  1Z92 A;  4OAA A;  5EQG A;  3DLQ I;  1A7M A;  3PIW A;  2JA7 D;  4A3B D;  1PY2 A;  1I1R B;  5LQB A;  5IYC D;  1CD9 A;  1M47 A;  1ITL A;  3SE3 B;  1M4C A;  4IKZ A;  4IU9 A;  1RCB A;  5D59 A;  1PGR A;  1EER A;  1HGU A;  4ZW9 A;  2O26 A;  4TPH A;  2O27 A;  3PO2 D;  3FKI D;  1HIK A;  3L5W I;  4OH3 A;  5EQI A;  3EW3 A;  4A3C D;  1IRL A;  5D6K A;  1BBN A;  5C65 A;  5C7X A;  4U4T A;  4CNI C;  1M4A A;  1F45 B;  1INR A;  4PS4 A;  4ZWC A;  4U4W A;  4X51 A;  3D85 C;  2B8Y A;  4BBS D;  2B8U A;  2CFP A;  3HOY D;  3HOZ D;  3QB1 A;  5D70 A;  4LRL A;  4YPG C;  2JA5 D;  3PO3 D;  3B5K A;  3MZG A;  3NCE A;  1EVS A;  4IKV A;  2R93 D;  1HUW A;  2O6I A;  2Q14 A;  2D48 A;  5D72 A;  3I4M D;  4TPG A;  2Z3Q A;  3HOW D;  3IRH A;  3QB7 A;  3OQ3 A;  4JA3 A;  3H3V E;  3LB6 A;  3N06 A;  4YUE C;  4YDY I;  1F6F A;  3OG6 A;  1LKI A;  2HYM B;  3UF2 A;  1CNT 1;  3AYH A;  1PW6 A;  2INT A;  3QAZ A;  4J05 A;  3G9V B;  1D9C A;  5GXB A;  4NN6 A;  1HWH A;  5D22 A;  1D9G A;  3OG4 A;  5L6Y C;  2XQB A;  4TPJ A;  3G6D A;  5KNH I;  1ILK A;  1FG9 A;  4QIQ A;  4YB9 D;  5C3E D;  2VUM D;  3QT2 C;  3DI3 A;  4GC0 A;  4GS7 A;  4JR9 A;  4ZWB A;  4A3G D;  4IKW A;  1PV7 A;  1HWG A;  2LAG A;  3I4N D;  1J7V L;  1Y6K L;  4D2D A;  1LK3 A;  4FA8 E;  3Q1S I;  4O6K A;  4YQX A;  4EXN A;  3HMX B;  4A3I D;  1PW4 A;  1IAR A;  1M4B A;  1ITM A;  2ERJ D;  3UX9 A;  5IP7 D;  1WU3 I;  1ALU A;  1QVN A;  4JRE A;  2IL6 A;  3NCC A;  2B63 D;  1V7M V;  3BES L;  3HOU D;  1ITF A;  4XNI A;  3UEZ E;  1Y6M L;  5EQH A;  4W6V A;  5A2O A;  1AU1 A;  3BPO A;  5IP9 D;  1M48 A;  3H0G D;  4DKF A;  1CN4 C;  3HOX D;  3HHC A;  1B5L A;  4MHL A;  4D2B A;  4IU8 A;  4J4L C;  3BPL A;  4XNJ A;  5D28 B;  5E4E A;  3S9D A;  1PVH B;  1Y14 A;  1RHG A;  4BY7 D;  3NCB A;  4A3F D;  5C4X D;  3O7P A;  1BGE A;  1VLK A;  4GBY A;  1GNC A;  1HZI A;  1WCM D;  1IJZ A;  3DUH C;  3SE4 B;  5D71 A;  5D58 A;  1Y1V D;  2B91 A;  3EJJ A;  1FYH A;  3VA2 A;  2ILK A;  4NI7 A;  3DI2 A;  3D87 A;  1Y1W D;  4BY1 D;  2JA8 D;  4DOH A;  5IYD D;  2E9W C;  2CFQ A;  1KF9 A;  4ZYR A;  4NN7 A;  2B8X A;  1BCN A;  4A3D D;  4BBR D;  1JLI A;  4A3J D;  4A3L D;  4LDS A;  4IKY A;  2B90 A;  1RFB A;  3TGX B;  1ETE A;  1YKB A;  2GMF A;  4NN5 A;  2R7Z D;  1IK0 A;  3O7Q A;  1EMR A;  4YBQ A;  1M49 A;  3WCY I;  4GRW A;  1Z7C A;  1HIJ A;  4UVM A;  1A22 A;  1EKU A;  5TS9 A;  1BGC A;  3D48 P;  3PIV A;  1BGD A;  4IKX A;  4O9H A;  4DKC A;  1BUY A;  1CYL A;  2Q98 A;  1IL6 A;  1P9M B;  1M4R A;  2PSM A;  2V8N A;  2JA6 D;  1CSG A;  4GBZ A;  4I77 Z;  4DKE A;  1V7N V;  4U4V A;  4BXX D;  2H24 A;  3NPZ A;  3HOV D;  1HUL A;  3INK C;  4NKQ C;  1AXI A;  4Q65 A;  3BPN A;  3NCF A;  1NBP A;  3WDO A;  2C35 A;  2L3O A;  4Z5R D;  1PV6 A;  4A3K D;  2L3Y A;  2D9Q A;  4NEJ A;  4A3M D;  2KZ1 A;  5IYB D;  3UF5 A;  1Y6N L;  4NI9 A;  2OQP A;  3HHR A; 
#chains in the Genus database with same CATH homology
 4ZWC A;  4D2C A;  3O7P A;  4UVM A;  2XUT A;  4U4W A;  4GC0 A;  1PW4 A;  4JR9 A;  2V8N A;  4ZWB A;  4Q65 A;  4GBY A;  5A2N A;  5EQI A;  4OH3 A;  4PYP A;  4J05 A;  4IKW A;  1PV7 A;  4APS A;  4D2B A;  4LEP A;  4IU8 A;  4JRE A;  5GXB A;  3WDO A;  2CFP A;  4IKX A;  3O7Q A;  4JA3 A;  4GBZ A;  2CFQ A;  4IKZ A;  5D58 A;  4ZYR A;  4IU9 A;  5D59 A;  4XNI A;  4OAA A;  4YBQ A;  5D6K A;  4XNJ A;  4U4V A;  1PV6 A;  5EQH A;  5EQG A;  4W6V A;  4TPJ A;  2Y5Y A;  5A2O A;  5C65 A;  4U4T A;  4QIQ A;  4IKV A;  4YB9 D;  4D2D A;  4LDS A;  4ZW9 A;  4IKY A;  4TPH A;  4TPG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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