4Q2CA

Crystal structure of crispr-associated protein
Total Genus 290
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
290
sequence length
926
structure length
926
Chain Sequence
GSPVGAAGWRVDPWIFWAKWGSGPDLGWHPLLCHMLDVAAVTLQMWRRVLPAAWKARISGVLGVGQEDAERWLAFFAGGHDIGKASPAFQLQLRPEQGRELVARRLRDAGLPLFNARAPHGTISANVLETVLADVFGLSGRSARWVAFAVGGHHGFVPSYDEVRRDLDQQAVGWGMWDAAREVLLCRLADALGLPGSSRPTVESTPDAFMLAGLVSVADWIGSNEEYFPYAAQSALQVPQLDAEAYLERAMRQAERAMASLGWVGWRPASGSMRLTELFPYIRQPTTVQAAAEELAGEVKSPSITIIEAPMGEGKTEAAMLLADTFSTAHGMSGCYFALPTMATSNQMFGRVTDYLRHRYPEDVVVVNLVHGHSDLSALLQELRQKGEEIFQLQGVYDEALGDEQLGAVVAGQWFTRGKRALLPPYGVGTVDQALLAVLQVKHVFVRLFALSTKTVIVDEVHAYDVYMTTLLHRLLEWLGALSVPVVVLSATLPSARRRELVKAYARGAGWQAERDLPPAGYPRITYAAAEDVRGIHFAPSEASRRKVALRWVSAPEHEALGQLLAEALSQGGCAAIICNTVPRAQALYSALREVFPGLAEDGMPELDLLHARYPYEEREVREARTLGRFSRNGRRPHRAILVATQVIEQSLDLDFDLMVTDLAPVDLVLQRMGRLHRHPVHDPLRPERLRSPELWVVSPQVMGDVPIFDRGSASVYDEHTLLRSWLALRDRDTLQLPEDIEELVEQVYSDGRVPQGASEELRSLWERTFKAQQKVLREDSLQAKYRYIKGPGYNSIWGIVTASVEEDAPELHPALQALTRLAEPSVSAVCLVAGSGGPCLPDGTPVDLDTPPDAAMAERLLRRSVAITDARVLDPLLDVPVPKGWERSSLLRGYRPLVFDASGRAMVGRWIVRIDPELGIVVESP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords CRISPR-associated helicase Cas3
publication title Molecular insights into DNA interference by CRISPR-associated nuclease-helicase Cas3
pubmed doi rcsb
source organism Thermobaculum terrenum
total genus 290
structure length 926
sequence length 926
ec nomenclature
pdb deposition date 2014-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18019 HD_6 HD domain
A PF18395 Cas3_C Cas3 C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.30 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 4q2cA01
4QQYA 3SK9A 4Q2DA 3SKDA 4Q2CA 3S4LA 4QQZA 4QQXA 4QQWA
chains in the Genus database with same CATH superfamily
4RXPA 2CQZA 4QG2A 3TMDA 5AO3A 4TNYA 2PGSA 4N6WA 2OGIA 3HC1A 3RF0A 3KH1A 3IRHA 2O6IA 4TNZA 4LRLA 4X9EA 4MCWA 2GZ4A 4TNRA 3TMCA 4QFZA 1YOYA 4QFXA 2PAQA 4QQXA 1U6ZA 4Q7HA 4QG0A 3SKDA 5AO2A 4QFYA 3U1NA 4MZ7A 4TO5A 4RXRA 2PARA 4TO2A 3CCGA 4DMBA 1VJ7A 3GW7A 4TO1A 4RXOA 4MLMA 3KQ5A 4L1JB 5TK9A 4BZCA 4R8ZA 4TNXA 5TK7A 5AO1A 3MEMA 3LJXA 2Q14A 5AO0A 4ZWGA 4L1JA 5AO4A 1YNBA 4ZWEA 4TO0A 3SK9A 2PAUA 4TO6A 2O08A 5TK8A 4QQYA 4ME4A 3TM8A 3NQWA 3S4LA 4XDSA 2HEKA 2FLOA 3BG2A 4N71A 2DQBA 4TO4A 1XX7A 4Q2CA 4TNPA 4TO3A 4QQZA 4MLNA 4L7WA 1VQRA 4BZBA 3HI0A 3I7AA 4MDZA 4RXQA 3P3QA 4TNQA 4QQWA 3M1TA 3NR1A 4Q2DA 4L7EA 2PQ7A 5TK6A 4QG1A 4RXSA 4QG4A 3TMBA 3MZOA 5TKAA
chains in the Genus database with same CATH topology
4RXPA 2CQZA 4QG2A 3TMDA 5AO3A 4TNYA 2PGSA 4N6WA 2OGIA 3HC1A 3RF0A 3KH1A 3IRHA 2O6IA 4TNZA 4LRLA 4X9EA 4MCWA 2GZ4A 4TNRA 3TMCA 4QFZA 1YOYA 4QFXA 2PAQA 4QQXA 1U6ZA 4Q7HA 4QG0A 3SKDA 5AO2A 4QFYA 3U1NA 4MZ7A 4TO5A 4RXRA 2PARA 4TO2A 3CCGA 4DMBA 1VJ7A 3GW7A 4TO1A 4RXOA 4MLMA 3KQ5A 4L1JB 5TK9A 4BZCA 4R8ZA 4TNXA 5TK7A 5AO1A 3MEMA 3LJXA 2Q14A 5AO0A 4ZWGA 4L1JA 5AO4A 1YNBA 4ZWEA 4TO0A 3SK9A 2PAUA 4TO6A 2O08A 5TK8A 4QQYA 4ME4A 3TM8A 3NQWA 3S4LA 4XDSA 2HEKA 2FLOA 3BG2A 4N71A 2DQBA 4TO4A 1XX7A 4Q2CA 4TNPA 4TO3A 4QQZA 4MLNA 4L7WA 1VQRA 4BZBA 3HI0A 3I7AA 4MDZA 4RXQA 3P3QA 4TNQA 4QQWA 3M1TA 3NR1A 4Q2DA 4L7EA 2PQ7A 5TK6A 4QG1A 4RXSA 4QG4A 3TMBA 3MZOA 5TKAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QQY A;  3SK9 A;  4Q2D A;  3SKD A;  4Q2C A;  3S4L A;  4QQZ A;  4QQX A;  4QQW A; 
#chains in the Genus database with same CATH topology
 4RXP A;  2CQZ A;  4QG2 A;  3TMD A;  5AO3 A;  4TNY A;  2PGS A;  4N6W A;  2OGI A;  3HC1 A;  3RF0 A;  3KH1 A;  3IRH A;  2O6I A;  4TNZ A;  4LRL A;  4X9E A;  4MCW A;  2GZ4 A;  4TNR A;  3TMC A;  4QFZ A;  1YOY A;  4QFX A;  2PAQ A;  4QQX A;  1U6Z A;  4Q7H A;  4QG0 A;  3SKD A;  5AO2 A;  4QFY A;  3U1N A;  4MZ7 A;  4TO5 A;  4RXR A;  2PAR A;  4TO2 A;  3CCG A;  4DMB A;  1VJ7 A;  3GW7 A;  4TO1 A;  4RXO A;  4MLM A;  3KQ5 A;  4L1J B;  5TK9 A;  4BZC A;  4R8Z A;  4TNX A;  5TK7 A;  5AO1 A;  3MEM A;  3LJX A;  2Q14 A;  5AO0 A;  4ZWG A;  4L1J A;  5AO4 A;  1YNB A;  4ZWE A;  4TO0 A;  3SK9 A;  2PAU A;  4TO6 A;  2O08 A;  5TK8 A;  4QQY A;  4ME4 A;  3TM8 A;  3NQW A;  3S4L A;  4XDS A;  2HEK A;  2FLO A;  3BG2 A;  4N71 A;  2DQB A;  4TO4 A;  1XX7 A;  4Q2C A;  4TNP A;  4TO3 A;  4QQZ A;  4MLN A;  4L7W A;  1VQR A;  4BZB A;  3HI0 A;  3I7A A;  4MDZ A;  4RXQ A;  3P3Q A;  4TNQ A;  4QQW A;  3M1T A;  3NR1 A;  4Q2D A;  4L7E A;  2PQ7 A;  5TK6 A;  4QG1 A;  4RXS A;  4QG4 A;  3TMB A;  3MZO A;  5TKA A; 
#chains in the Genus database with same CATH homology
 4RXP A;  2CQZ A;  4QG2 A;  3TMD A;  5AO3 A;  4TNY A;  2PGS A;  4N6W A;  2OGI A;  3HC1 A;  3RF0 A;  3KH1 A;  3IRH A;  2O6I A;  4TNZ A;  4LRL A;  4X9E A;  4MCW A;  2GZ4 A;  4TNR A;  3TMC A;  4QFZ A;  1YOY A;  4QFX A;  2PAQ A;  4QQX A;  1U6Z A;  4Q7H A;  4QG0 A;  3SKD A;  5AO2 A;  4QFY A;  3U1N A;  4MZ7 A;  4TO5 A;  4RXR A;  2PAR A;  4TO2 A;  3CCG A;  4DMB A;  1VJ7 A;  3GW7 A;  4TO1 A;  4RXO A;  4MLM A;  3KQ5 A;  4L1J B;  5TK9 A;  4BZC A;  4R8Z A;  4TNX A;  5TK7 A;  5AO1 A;  3MEM A;  3LJX A;  2Q14 A;  5AO0 A;  4ZWG A;  4L1J A;  5AO4 A;  1YNB A;  4ZWE A;  4TO0 A;  3SK9 A;  2PAU A;  4TO6 A;  2O08 A;  5TK8 A;  4QQY A;  4ME4 A;  3TM8 A;  3NQW A;  3S4L A;  4XDS A;  2HEK A;  2FLO A;  3BG2 A;  4N71 A;  2DQB A;  4TO4 A;  1XX7 A;  4Q2C A;  4TNP A;  4TO3 A;  4QQZ A;  4MLN A;  4L7W A;  1VQR A;  4BZB A;  3HI0 A;  3I7A A;  4MDZ A;  4RXQ A;  3P3Q A;  4TNQ A;  4QQW A;  3M1T A;  3NR1 A;  4Q2D A;  4L7E A;  2PQ7 A;  5TK6 A;  4QG1 A;  4RXS A;  4QG4 A;  3TMB A;  3MZO A;  5TKA A; 
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similar chains in the Genus database (?% sequence similarity)
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