4Q2HA

Crystal structure of probable proline racemase from agrobacterium radiobacter k84, target efi-506561, with bound carbonate
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
346
structure length
345
Chain Sequence
SMRWKRTIQLLDVHCEGEIGRVAIGGVPKIPGNTVAEQLHWLNTDPKGEELRRFLVLEPRGAPIGSVNLLLPARHPDADAAFIILQPDQAHASSGSNSICVTTALLESGIVEMKEPETVVTLETAAGLVRATATCRDGRCEKVRLTMVPSFVHELDVGIDTPQWGRIKLDLCYGGIFYALVDVGQIGLTIGKANAASLVQAGMVLKELINRTVPVVHPEIPAISGVAYVMFRDIDADGAIRTCTTMWPGRADRSPGTGNSANLATLHARGKARVGDVFKSRSIIGSEFEVGLQAETEVAGKPAIIPTITGRGFTFGLSQVALDPFDPMANGFALTDVWGPLAGDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Proline Racemase Arad_0731 from Agrobacterium Radiobacter, Target Efi-506561
rcsb
source organism Agrobacterium radiobacter k84
molecule tags Isomerase
molecule keywords Proline racemase protein
total genus 96
structure length 345
sequence length 346
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2014-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4q2hA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4q2hA01
2PW0A 2AZPA 2GKJA 4JBDA 1XUAA 1SDJA 4Q2HA 5H2YA 4JUUA 2Q9HA 2Q9JA 1U1VA 4Q60A 1BWZA 1W62A 1QYAA 1T6KA 4IJZA 5M47A 4K8LA 1YM5A 4K7XA 4DUNA 1S7JA 1XUBA 1TM0A 5HA4A 1QY9A 4K7GB 1U1WA 4LB0A 2PVZA 2GKEA 4J9WA 4IK0A 1U0KA 3EJXA 4JCIA 3G7KA 5H2GA 3EDNA 1GQZA 4J9XA 3FVEA 5IWEA 1W61A 2OTNA 1U1XA 2H9FA 4JD7A 3EKMA
chains in the Genus database with same CATH superfamily
3W5WA 1SDJA 4LG3A 4Q2HA 1K20A 1IR6A 1BWZA 1QYAA 1T6KA 2EB0A 4K8LA 4K7XA 4DUNA 4LB0A 2ZXRA 1I74A 2YMAA 5H2GA 2LT2A 3PW9A 3WQZA 4JBDA 2ZXOA 2Q9JA 4Q60A 1W62A 3G98A 4IJZA 4OA3A 3PVHA 2MPBA 2QB7A 3DEVA 4J9WA 4IK0A 1WPMA 3EJXA 4JCIA 2KPTA 1W61A 1U1XA 4JD7A 2GKJA 1XUAA 5H2YA 2QB8A 1U1VA 2ZXPA 5M47A 2HAWA 2ZVFA 4LS9A 5HA4A 1QY9A 4K7GB 1U1WA 2KW7A 1U0KA 3G7KA 1GQZA 4J9XA 5ANPA 4RPAA 2OTNA 3ICJA 2PW0A 2AZPA 2IW4A 4JUUA 2Q9HA 3PTJA 1WPPA 3IGHX 2ENXA 1YM5A 2QB6A 1S7JA 1XUBA 1K23A 1TM0A 4PY9A 2PVZA 2GKEA 3EDNA 4GL6A 3FVEA 5IWEA 2H9FA 3EKMA
chains in the Genus database with same CATH topology
3W5WA 1SDJA 4LG3A 4Q2HA 1K20A 1IR6A 1BWZA 1QYAA 1T6KA 2EB0A 4K8LA 4K7XA 4DUNA 4LB0A 2ZXRA 1I74A 2YMAA 5H2GA 2LT2A 3PW9A 3WQZA 4JBDA 2ZXOA 2Q9JA 4Q60A 1W62A 3G98A 4IJZA 4OA3A 3PVHA 2MPBA 2QB7A 3DEVA 4J9WA 4IK0A 1WPMA 3EJXA 4JCIA 2KPTA 1W61A 1U1XA 4JD7A 2GKJA 1XUAA 5H2YA 2QB8A 1U1VA 2ZXPA 5M47A 2HAWA 2ZVFA 4LS9A 5HA4A 1QY9A 4K7GB 1U1WA 2KW7A 1U0KA 3G7KA 1GQZA 4J9XA 5ANPA 4RPAA 2OTNA 3ICJA 2PW0A 2AZPA 2IW4A 4JUUA 2Q9HA 3PTJA 1WPPA 3IGHX 2ENXA 1YM5A 2QB6A 1S7JA 1XUBA 1K23A 1TM0A 4PY9A 2PVZA 2GKEA 3EDNA 4GL6A 3FVEA 5IWEA 2H9FA 3EKMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PW0 A;  2AZP A;  2GKJ A;  4JBD A;  1XUA A;  1SDJ A;  4Q2H A;  5H2Y A;  4JUU A;  2Q9H A;  2Q9J A;  1U1V A;  4Q60 A;  1BWZ A;  1W62 A;  1QYA A;  1T6K A;  4IJZ A;  5M47 A;  4K8L A;  1YM5 A;  4K7X A;  4DUN A;  1S7J A;  1XUB A;  1TM0 A;  5HA4 A;  1QY9 A;  4K7G B;  1U1W A;  4LB0 A;  2PVZ A;  2GKE A;  4J9W A;  4IK0 A;  1U0K A;  3EJX A;  4JCI A;  3G7K A;  5H2G A;  3EDN A;  1GQZ A;  4J9X A;  3FVE A;  5IWE A;  1W61 A;  2OTN A;  1U1X A;  2H9F A;  4JD7 A;  3EKM A; 
#chains in the Genus database with same CATH topology
 3W5W A;  1SDJ A;  4LG3 A;  4Q2H A;  1K20 A;  1IR6 A;  1BWZ A;  1QYA A;  1T6K A;  2EB0 A;  4K8L A;  4K7X A;  4DUN A;  4LB0 A;  2ZXR A;  1I74 A;  2YMA A;  5H2G A;  2LT2 A;  3PW9 A;  3WQZ A;  4JBD A;  2ZXO A;  2Q9J A;  4Q60 A;  1W62 A;  3G98 A;  4IJZ A;  4OA3 A;  3PVH A;  2MPB A;  2QB7 A;  3DEV A;  4J9W A;  4IK0 A;  1WPM A;  3EJX A;  4JCI A;  2KPT A;  1W61 A;  1U1X A;  4JD7 A;  2GKJ A;  1XUA A;  5H2Y A;  2QB8 A;  1U1V A;  2ZXP A;  5M47 A;  2HAW A;  2ZVF A;  4LS9 A;  5HA4 A;  1QY9 A;  4K7G B;  1U1W A;  2KW7 A;  1U0K A;  3G7K A;  1GQZ A;  4J9X A;  5ANP A;  4RPA A;  2OTN A;  3ICJ A;  2PW0 A;  2AZP A;  2IW4 A;  4JUU A;  2Q9H A;  3PTJ A;  1WPP A;  3IGH X;  2ENX A;  1YM5 A;  2QB6 A;  1S7J A;  1XUB A;  1K23 A;  1TM0 A;  4PY9 A;  2PVZ A;  2GKE A;  3EDN A;  4GL6 A;  3FVE A;  5IWE A;  2H9F A;  3EKM A; 
#chains in the Genus database with same CATH homology
 3W5W A;  1SDJ A;  4LG3 A;  4Q2H A;  1K20 A;  1IR6 A;  1BWZ A;  1QYA A;  1T6K A;  2EB0 A;  4K8L A;  4K7X A;  4DUN A;  4LB0 A;  2ZXR A;  1I74 A;  2YMA A;  5H2G A;  2LT2 A;  3PW9 A;  3WQZ A;  4JBD A;  2ZXO A;  2Q9J A;  4Q60 A;  1W62 A;  3G98 A;  4IJZ A;  4OA3 A;  3PVH A;  2MPB A;  2QB7 A;  3DEV A;  4J9W A;  4IK0 A;  1WPM A;  3EJX A;  4JCI A;  2KPT A;  1W61 A;  1U1X A;  4JD7 A;  2GKJ A;  1XUA A;  5H2Y A;  2QB8 A;  1U1V A;  2ZXP A;  5M47 A;  2HAW A;  2ZVF A;  4LS9 A;  5HA4 A;  1QY9 A;  4K7G B;  1U1W A;  2KW7 A;  1U0K A;  3G7K A;  1GQZ A;  4J9X A;  5ANP A;  4RPA A;  2OTN A;  3ICJ A;  2PW0 A;  2AZP A;  2IW4 A;  4JUU A;  2Q9H A;  3PTJ A;  1WPP A;  3IGH X;  2ENX A;  1YM5 A;  2QB6 A;  1S7J A;  1XUB A;  1K23 A;  1TM0 A;  4PY9 A;  2PVZ A;  2GKE A;  3EDN A;  4GL6 A;  3FVE A;  5IWE A;  2H9F A;  3EKM A; 
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