4Q2HA

Crystal structure of probable proline racemase from agrobacterium radiobacter k84, target efi-506561, with bound carbonate
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
346
structure length
345
Chain Sequence
SMRWKRTIQLLDVHCEGEIGRVAIGGVPKIPGNTVAEQLHWLNTDPKGEELRRFLVLEPRGAPIGSVNLLLPARHPDADAAFIILQPDQAHASSGSNSICVTTALLESGIVEMKEPETVVTLETAAGLVRATATCRDGRCEKVRLTMVPSFVHELDVGIDTPQWGRIKLDLCYGGIFYALVDVGQIGLTIGKANAASLVQAGMVLKELINRTVPVVHPEIPAISGVAYVMFRDIDADGAIRTCTTMWPGRADRSPGTGNSANLATLHARGKARVGDVFKSRSIIGSEFEVGLQAETEVAGKPAIIPTITGRGFTFGLSQVALDPFDPMANGFALTDVWGPLAGDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Proline Racemase Arad_0731 from Agrobacterium Radiobacter, Target Efi-506561
rcsb
source organism Agrobacterium radiobacter k84
molecule tags Isomerase
molecule keywords Proline racemase protein
total genus 96
structure length 345
sequence length 346
chains with identical sequence B
ec nomenclature ec 5.1.1.8: 4-hydroxyproline epimerase.
pdb deposition date 2014-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05544 Pro_racemase Proline racemase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4q2hA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 4q2hA01
4JBDA 5HA4A 1S7JA 4DUNA 1W62A 2H9FA 3EKMA 1XUAA 1U0KA 2Q9JA 4LB0A 4Q2HA 1W61A 1XUBA 1YM5A 1U1WA 4JD7A 4K7XA 4J9XA 1U1VA 1U1XA 2PVZA 4JUUA 5H2GA 5IWEA 2GKJA 3EDNA 3G7KA 1GQZA 3EJXA 1TM0A 1SDJA 2AZPA 4K8LA 1BWZA 4Q60A 2GKEA 2OTNA 4IJZA 5H2YA 1QY9A 1QYAA 1T6KA 4J9WA 3FVEA 5M47A 2PW0A 2Q9HA 4JCIA 4IK0A 4K7GB
chains in the Genus database with same CATH superfamily
4DUNA 3W5WA 1XUAA 3WQZA 1XUBA 1U1VA 4JUUA 2GKJA 2EB0A 3EDNA 3G98A 1TM0A 3IGHX 1I74A 1QY9A 1QYAA 3DEVA 2LT2A 3PW9A 4J9WA 2MPBA 3EKMA 1U1WA 4K7XA 2IW4A 4J9XA 4LS9A 2KPTA 2YMAA 2QB6A 4K8LA 2GKEA 4IJZA 2KW7A 5H2YA 4LG3A 5M47A 2Q9HA 3PVHA 5HA4A 1S7JA 1W62A 2HAWA 4GL6A 1U0KA 4LB0A 4Q2HA 2QB7A 1W61A 4JD7A 4RPAA 3G7KA 1WPPA 2AZPA 1IR6A 3PTJA 2ZXRA 4PY9A 2ENXA 4K7GB 4JBDA 4OA3A 2H9FA 2QB8A 2Q9JA 3ICJA 1YM5A 1U1XA 2PVZA 5ANPA 5H2GA 1WPMA 5IWEA 1K23A 1GQZA 2ZXPA 3EJXA 2ZVFA 1K20A 1SDJA 1BWZA 4Q60A 2OTNA 1T6KA 3FVEA 2ZXOA 2PW0A 4JCIA 4IK0A
chains in the Genus database with same CATH topology
4DUNA 3W5WA 1XUAA 3WQZA 1XUBA 1U1VA 4JUUA 2GKJA 2EB0A 3EDNA 3G98A 1TM0A 3IGHX 1I74A 1QY9A 1QYAA 3DEVA 2LT2A 3PW9A 4J9WA 2MPBA 3EKMA 1U1WA 4K7XA 2IW4A 4J9XA 4LS9A 2KPTA 2YMAA 2QB6A 4K8LA 2GKEA 4IJZA 2KW7A 5H2YA 4LG3A 5M47A 2Q9HA 3PVHA 5HA4A 1S7JA 1W62A 2HAWA 4GL6A 1U0KA 4LB0A 4Q2HA 2QB7A 1W61A 4JD7A 4RPAA 3G7KA 1WPPA 2AZPA 1IR6A 3PTJA 2ZXRA 4PY9A 2ENXA 4K7GB 4JBDA 4OA3A 2H9FA 2QB8A 2Q9JA 3ICJA 1YM5A 1U1XA 2PVZA 5ANPA 5H2GA 1WPMA 5IWEA 1K23A 1GQZA 2ZXPA 3EJXA 2ZVFA 1K20A 1SDJA 1BWZA 4Q60A 2OTNA 1T6KA 3FVEA 2ZXOA 2PW0A 4JCIA 4IK0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JBD A;  5HA4 A;  1S7J A;  4DUN A;  1W62 A;  2H9F A;  3EKM A;  1XUA A;  1U0K A;  2Q9J A;  4LB0 A;  4Q2H A;  1W61 A;  1XUB A;  1YM5 A;  1U1W A;  4JD7 A;  4K7X A;  4J9X A;  1U1V A;  1U1X A;  2PVZ A;  4JUU A;  5H2G A;  5IWE A;  2GKJ A;  3EDN A;  3G7K A;  1GQZ A;  3EJX A;  1TM0 A;  1SDJ A;  2AZP A;  4K8L A;  1BWZ A;  4Q60 A;  2GKE A;  2OTN A;  4IJZ A;  5H2Y A;  1QY9 A;  1QYA A;  1T6K A;  4J9W A;  3FVE A;  5M47 A;  2PW0 A;  2Q9H A;  4JCI A;  4IK0 A;  4K7G B; 
#chains in the Genus database with same CATH topology
 4DUN A;  3W5W A;  1XUA A;  3WQZ A;  1XUB A;  1U1V A;  4JUU A;  2GKJ A;  2EB0 A;  3EDN A;  3G98 A;  1TM0 A;  3IGH X;  1I74 A;  1QY9 A;  1QYA A;  3DEV A;  2LT2 A;  3PW9 A;  4J9W A;  2MPB A;  3EKM A;  1U1W A;  4K7X A;  2IW4 A;  4J9X A;  4LS9 A;  2KPT A;  2YMA A;  2QB6 A;  4K8L A;  2GKE A;  4IJZ A;  2KW7 A;  5H2Y A;  4LG3 A;  5M47 A;  2Q9H A;  3PVH A;  5HA4 A;  1S7J A;  1W62 A;  2HAW A;  4GL6 A;  1U0K A;  4LB0 A;  4Q2H A;  2QB7 A;  1W61 A;  4JD7 A;  4RPA A;  3G7K A;  1WPP A;  2AZP A;  1IR6 A;  3PTJ A;  2ZXR A;  4PY9 A;  2ENX A;  4K7G B;  4JBD A;  4OA3 A;  2H9F A;  2QB8 A;  2Q9J A;  3ICJ A;  1YM5 A;  1U1X A;  2PVZ A;  5ANP A;  5H2G A;  1WPM A;  5IWE A;  1K23 A;  1GQZ A;  2ZXP A;  3EJX A;  2ZVF A;  1K20 A;  1SDJ A;  1BWZ A;  4Q60 A;  2OTN A;  1T6K A;  3FVE A;  2ZXO A;  2PW0 A;  4JCI A;  4IK0 A; 
#chains in the Genus database with same CATH homology
 4DUN A;  3W5W A;  1XUA A;  3WQZ A;  1XUB A;  1U1V A;  4JUU A;  2GKJ A;  2EB0 A;  3EDN A;  3G98 A;  1TM0 A;  3IGH X;  1I74 A;  1QY9 A;  1QYA A;  3DEV A;  2LT2 A;  3PW9 A;  4J9W A;  2MPB A;  3EKM A;  1U1W A;  4K7X A;  2IW4 A;  4J9X A;  4LS9 A;  2KPT A;  2YMA A;  2QB6 A;  4K8L A;  2GKE A;  4IJZ A;  2KW7 A;  5H2Y A;  4LG3 A;  5M47 A;  2Q9H A;  3PVH A;  5HA4 A;  1S7J A;  1W62 A;  2HAW A;  4GL6 A;  1U0K A;  4LB0 A;  4Q2H A;  2QB7 A;  1W61 A;  4JD7 A;  4RPA A;  3G7K A;  1WPP A;  2AZP A;  1IR6 A;  3PTJ A;  2ZXR A;  4PY9 A;  2ENX A;  4K7G B;  4JBD A;  4OA3 A;  2H9F A;  2QB8 A;  2Q9J A;  3ICJ A;  1YM5 A;  1U1X A;  2PVZ A;  5ANP A;  5H2G A;  1WPM A;  5IWE A;  1K23 A;  1GQZ A;  2ZXP A;  3EJX A;  2ZVF A;  1K20 A;  1SDJ A;  1BWZ A;  4Q60 A;  2OTN A;  1T6K A;  3FVE A;  2ZXO A;  2PW0 A;  4JCI A;  4IK0 A; 
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