4Q57B

Crystal structure of the plectin 1a actin-binding domain/n-terminal domain of calmodulin complex
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
244
structure length
243
Chain Sequence
GPMDNLYLAVLRASEGKKDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Calcium binding/structural protein
molecule keywords Calmodulin
publication title Crystal structure of the plectin 1a actin-binding domain/N-terminal domain of calmodulin complex
rcsb
total genus 98
structure length 243
sequence length 244
ec nomenclature
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4q57B02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4q57B01
3JARM 2RR8A 1BHDA 2EYIA 2D88A 5A37A 2EE7A 3JAKM 4EDNA 5A36A 1WYMA 1WYRA 1WYQA 3I6XA 2VZIB 1P2XA 3JALM 4Q58A 1WYPA 1WIXA 1WJOA 3F7PA 2DK9A 1WYLA 1SH6A 2EYNA 1H67A 2WA7A 2QJZA 2R8UA 2YRNA 5A38A 2D89A 2K3SA 2JV9A 2VZDA 4Q57B 3HORA 2WA5A 2D87A 1VKAA 2L3GA 5L0OA 2D86A 4TXIA 2VZCA 4Q59A 2D85A 1AOAA 3HOPA 2K2RA 2WFNA 2E9KA 1UJOA 1DXXA 2VZGB 4TXKA 1WKUA 4B7LA 1V5KA 1MB8A 5A4BA 1PXYA 3KY9A 1WYNA 1QAGA 1BKRA 1SH5A 1P5SA 1PA7A 3REPB 2QJXA 1TJTA 1UEGA 3CO1A 5J8EA 3KMWB 1WYOA 3HOCA 4EDLA 5BVRA 3FERA 2R0OA 1RT8A 1AA2A 2WA6A 3KMUB 4EDMA
chains in the Genus database with same CATH superfamily
3JARM 2RR8A 1BHDA 2EYIA 2D88A 5A37A 2EE7A 3JAKM 4EDNA 5A36A 1WYMA 1WYRA 2HKPA 1WYQA 3I6XA 2VZIB 1P2XA 3JALM 2WDTA 2VE7A 4Q58A 1EUVA 2HL8A 1WYPA 1WIXA 1WJOA 4DDPA 3F7PA 2DK9A 1WYLA 1SH6A 2EYNA 1H67A 2WA7A 2QJZA 2R8UA 2YRNA 5A38A 2D89A 2K3SA 3VP7A 2JV9A 2VZDA 4Q57B 3HORA 2WA5A 2D87A 1VKAA 2L3GA 5L0OA 2D86A 4TXIA 2VZCA 4Q59A 5FMTA 2VE7C 2D85A 1AOAA 3HOPA 2K2RA 2WFNA 2E9KA 1UJOA 1DXXA 2VZGB 4TXKA 3EAYA 1WKUA 4B7LA 1V5KA 1MB8A 5A4BA 1PXYA 3KY9A 1WYNA 1QAGA 1BKRA 4LVRA 1SH5A 1P5SA 1PA7A 3REPB 2HL9A 2QJXA 1TJTA 4LVPA 2WE6A 2IGPA 1UEGA 3CO1A 5FMUA 5J8EA 3KMWB 1WYOA 3HOCA 4EDLA 5BVRA 3FERA 2EQOA 2R0OA 1RT8A 1AA2A 2WA6A 3KMUB 4EDMA
chains in the Genus database with same CATH topology
3JARM 2RR8A 1BHDA 2EYIA 2D88A 5A37A 2EE7A 3JAKM 4EDNA 5A36A 1WYMA 1WYRA 1WYQA 3I6XA 2VZIB 1P2XA 3JALM 4Q58A 1WYPA 1WIXA 1WJOA 3F7PA 2DK9A 1WYLA 1SH6A 2EYNA 1H67A 2WA7A 2QJZA 2R8UA 2YRNA 5A38A 2D89A 2K3SA 2JV9A 2VZDA 4Q57B 3HORA 2WA5A 2D87A 1VKAA 2L3GA 5L0OA 2D86A 4TXIA 2VZCA 4Q59A 2D85A 1AOAA 3HOPA 2K2RA 2WFNA 2E9KA 1UJOA 1DXXA 2VZGB 4TXKA 1WKUA 4B7LA 1V5KA 1MB8A 5A4BA 1PXYA 3KY9A 1WYNA 1QAGA 1BKRA 1SH5A 1P5SA 1PA7A 3REPB 2QJXA 1TJTA 1UEGA 3CO1A 5J8EA 3KMWB 1WYOA 3HOCA 4EDLA 5BVRA 3FERA 2R0OA 1RT8A 1AA2A 2WA6A 3KMUB 4EDMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAR M;  2RR8 A;  1BHD A;  2EYI A;  2D88 A;  5A37 A;  2EE7 A;  3JAK M;  4EDN A;  5A36 A;  1WYM A;  1WYR A;  1WYQ A;  3I6X A;  2VZI B;  1P2X A;  3JAL M;  4Q58 A;  1WYP A;  1WIX A;  1WJO A;  3F7P A;  2DK9 A;  1WYL A;  1SH6 A;  2EYN A;  1H67 A;  2WA7 A;  2QJZ A;  2R8U A;  2YRN A;  5A38 A;  2D89 A;  2K3S A;  2JV9 A;  2VZD A;  4Q57 B;  3HOR A;  2WA5 A;  2D87 A;  1VKA A;  2L3G A;  5L0O A;  2D86 A;  4TXI A;  2VZC A;  4Q59 A;  2D85 A;  1AOA A;  3HOP A;  2K2R A;  2WFN A;  2E9K A;  1UJO A;  1DXX A;  2VZG B;  4TXK A;  1WKU A;  4B7L A;  1V5K A;  1MB8 A;  5A4B A;  1PXY A;  3KY9 A;  1WYN A;  1QAG A;  1BKR A;  1SH5 A;  1P5S A;  1PA7 A;  3REP B;  2QJX A;  1TJT A;  1UEG A;  3CO1 A;  5J8E A;  3KMW B;  1WYO A;  3HOC A;  4EDL A;  5BVR A;  3FER A;  2R0O A;  1RT8 A;  1AA2 A;  2WA6 A;  3KMU B;  4EDM A; 
#chains in the Genus database with same CATH topology
 3JAR M;  2RR8 A;  1BHD A;  2EYI A;  2D88 A;  5A37 A;  2EE7 A;  3JAK M;  4EDN A;  5A36 A;  1WYM A;  1WYR A;  2HKP A;  1WYQ A;  3I6X A;  2VZI B;  1P2X A;  3JAL M;  2WDT A;  2VE7 A;  4Q58 A;  1EUV A;  2HL8 A;  1WYP A;  1WIX A;  1WJO A;  4DDP A;  3F7P A;  2DK9 A;  1WYL A;  1SH6 A;  2EYN A;  1H67 A;  2WA7 A;  2QJZ A;  2R8U A;  2YRN A;  5A38 A;  2D89 A;  2K3S A;  3VP7 A;  2JV9 A;  2VZD A;  4Q57 B;  3HOR A;  2WA5 A;  2D87 A;  1VKA A;  2L3G A;  5L0O A;  2D86 A;  4TXI A;  2VZC A;  4Q59 A;  5FMT A;  2VE7 C;  2D85 A;  1AOA A;  3HOP A;  2K2R A;  2WFN A;  2E9K A;  1UJO A;  1DXX A;  2VZG B;  4TXK A;  3EAY A;  1WKU A;  4B7L A;  1V5K A;  1MB8 A;  5A4B A;  1PXY A;  3KY9 A;  1WYN A;  1QAG A;  1BKR A;  4LVR A;  1SH5 A;  1P5S A;  1PA7 A;  3REP B;  2HL9 A;  2QJX A;  1TJT A;  4LVP A;  2WE6 A;  2IGP A;  1UEG A;  3CO1 A;  5FMU A;  5J8E A;  3KMW B;  1WYO A;  3HOC A;  4EDL A;  5BVR A;  3FER A;  2EQO A;  2R0O A;  1RT8 A;  1AA2 A;  2WA6 A;  3KMU B;  4EDM A; 
#chains in the Genus database with same CATH homology
 3JAR M;  2RR8 A;  1BHD A;  2EYI A;  2D88 A;  5A37 A;  2EE7 A;  3JAK M;  4EDN A;  5A36 A;  1WYM A;  1WYR A;  1WYQ A;  3I6X A;  2VZI B;  1P2X A;  3JAL M;  4Q58 A;  1WYP A;  1WIX A;  1WJO A;  3F7P A;  2DK9 A;  1WYL A;  1SH6 A;  2EYN A;  1H67 A;  2WA7 A;  2QJZ A;  2R8U A;  2YRN A;  5A38 A;  2D89 A;  2K3S A;  2JV9 A;  2VZD A;  4Q57 B;  3HOR A;  2WA5 A;  2D87 A;  1VKA A;  2L3G A;  5L0O A;  2D86 A;  4TXI A;  2VZC A;  4Q59 A;  2D85 A;  1AOA A;  3HOP A;  2K2R A;  2WFN A;  2E9K A;  1UJO A;  1DXX A;  2VZG B;  4TXK A;  1WKU A;  4B7L A;  1V5K A;  1MB8 A;  5A4B A;  1PXY A;  3KY9 A;  1WYN A;  1QAG A;  1BKR A;  1SH5 A;  1P5S A;  1PA7 A;  3REP B;  2QJX A;  1TJT A;  1UEG A;  3CO1 A;  5J8E A;  3KMW B;  1WYO A;  3HOC A;  4EDL A;  5BVR A;  3FER A;  2R0O A;  1RT8 A;  1AA2 A;  2WA6 A;  3KMU B;  4EDM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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