4Q57B

Crystal structure of the plectin 1a actin-binding domain/n-terminal domain of calmodulin complex
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
244
structure length
243
Chain Sequence
GPMDNLYLAVLRASEGKKDERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the plectin 1a actin-binding domain/N-terminal domain of calmodulin complex
rcsb
molecule tags Calcium binding/structural protein
molecule keywords Calmodulin
total genus 98
structure length 243
sequence length 244
ec nomenclature
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4q57B02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4q57B01
1WKUA 4Q59A 3KMUB 2E9KA 4TXIA 1WYLA 4TXKA 1H67A 5A4BA 1PXYA 1WYQA 1UJOA 3KY9A 2VZIB 5A38A 2WA7A 3FERA 3HOCA 1WIXA 2K2RA 2VZCA 2QJZA 1VKAA 1P2XA 2D88A 5A36A 2VZGB 1PA7A 1WYRA 1V5KA 3JALM 3HOPA 3JAKM 1WYNA 2D85A 2EYIA 2QJXA 1TJTA 2D86A 1QAGA 5BVRA 3HORA 2WFNA 5L0OA 2EE7A 1WJOA 3KMWB 1RT8A 2JV9A 1AA2A 4Q58A 2DK9A 2R8UA 1WYMA 2WA6A 2R0OA 2YRNA 2EYNA 4Q57B 1SH5A 1BHDA 2D89A 3REPB 2VZDA 3CO1A 5J8EA 4EDMA 4EDNA 2K3SA 1DXXA 1AOAA 1SH6A 1BKRA 3JARM 4EDLA 2RR8A 2L3GA 1WYPA 1UEGA 1MB8A 3F7PA 5A37A 4B7LA 1P5SA 3I6XA 2D87A 2WA5A 1WYOA
chains in the Genus database with same CATH superfamily
1WKUA 4Q59A 4DDPA 3KMUB 2IGPA 2E9KA 4TXIA 1WYLA 4TXKA 3VP7A 1H67A 5A4BA 1PXYA 1WYQA 1UJOA 4LVRA 2VE7A 3KY9A 2VZIB 5A38A 2WA7A 2WDTA 3FERA 3HOCA 1WIXA 2K2RA 2VZCA 4LVPA 2QJZA 1VKAA 1P2XA 2D88A 5A36A 2VZGB 1PA7A 1WYRA 1V5KA 3JALM 3HOPA 3JAKM 1WYNA 2D85A 5FMUA 2EYIA 2QJXA 3EAYA 1TJTA 2D86A 2VE7C 2HKPA 1QAGA 5BVRA 3HORA 2WFNA 5L0OA 2EE7A 1EUVA 1WJOA 2WE6A 1RT8A 3KMWB 2JV9A 1AA2A 4Q58A 2DK9A 2R8UA 1WYMA 2WA6A 2R0OA 2YRNA 2EYNA 4Q57B 1SH5A 1BHDA 2D89A 3REPB 2EQOA 2VZDA 3CO1A 5J8EA 4EDMA 4EDNA 2K3SA 1DXXA 1AOAA 1SH6A 1BKRA 3JARM 4EDLA 2RR8A 2L3GA 1WYPA 1UEGA 1MB8A 3F7PA 5A37A 5FMTA 4B7LA 2HL8A 1P5SA 3I6XA 2HL9A 2D87A 2WA5A 1WYOA
chains in the Genus database with same CATH topology
1WKUA 4Q59A 3KMUB 2E9KA 4TXIA 1WYLA 4TXKA 1H67A 5A4BA 1PXYA 1WYQA 1UJOA 3KY9A 2VZIB 5A38A 2WA7A 3FERA 3HOCA 1WIXA 2K2RA 2VZCA 2QJZA 1VKAA 1P2XA 2D88A 5A36A 2VZGB 1PA7A 1WYRA 1V5KA 3JALM 3HOPA 3JAKM 1WYNA 2D85A 2EYIA 2QJXA 1TJTA 2D86A 1QAGA 5BVRA 3HORA 2WFNA 5L0OA 2EE7A 1WJOA 3KMWB 1RT8A 2JV9A 1AA2A 4Q58A 2DK9A 2R8UA 1WYMA 2WA6A 2R0OA 2YRNA 2EYNA 4Q57B 1SH5A 1BHDA 2D89A 3REPB 2VZDA 3CO1A 5J8EA 4EDMA 4EDNA 2K3SA 1DXXA 1AOAA 1SH6A 1BKRA 3JARM 4EDLA 2RR8A 2L3GA 1WYPA 1UEGA 1MB8A 3F7PA 5A37A 4B7LA 1P5SA 3I6XA 2D87A 2WA5A 1WYOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WKU A;  4Q59 A;  3KMU B;  2E9K A;  4TXI A;  1WYL A;  4TXK A;  1H67 A;  5A4B A;  1PXY A;  1WYQ A;  1UJO A;  3KY9 A;  2VZI B;  5A38 A;  2WA7 A;  3FER A;  3HOC A;  1WIX A;  2K2R A;  2VZC A;  2QJZ A;  1VKA A;  1P2X A;  2D88 A;  5A36 A;  2VZG B;  1PA7 A;  1WYR A;  1V5K A;  3JAL M;  3HOP A;  3JAK M;  1WYN A;  2D85 A;  2EYI A;  2QJX A;  1TJT A;  2D86 A;  1QAG A;  5BVR A;  3HOR A;  2WFN A;  5L0O A;  2EE7 A;  1WJO A;  3KMW B;  1RT8 A;  2JV9 A;  1AA2 A;  4Q58 A;  2DK9 A;  2R8U A;  1WYM A;  2WA6 A;  2R0O A;  2YRN A;  2EYN A;  4Q57 B;  1SH5 A;  1BHD A;  2D89 A;  3REP B;  2VZD A;  3CO1 A;  5J8E A;  4EDM A;  4EDN A;  2K3S A;  1DXX A;  1AOA A;  1SH6 A;  1BKR A;  3JAR M;  4EDL A;  2RR8 A;  2L3G A;  1WYP A;  1UEG A;  1MB8 A;  3F7P A;  5A37 A;  4B7L A;  1P5S A;  3I6X A;  2D87 A;  2WA5 A;  1WYO A; 
#chains in the Genus database with same CATH topology
 1WKU A;  4Q59 A;  4DDP A;  3KMU B;  2IGP A;  2E9K A;  4TXI A;  1WYL A;  4TXK A;  3VP7 A;  1H67 A;  5A4B A;  1PXY A;  1WYQ A;  1UJO A;  4LVR A;  2VE7 A;  3KY9 A;  2VZI B;  5A38 A;  2WA7 A;  2WDT A;  3FER A;  3HOC A;  1WIX A;  2K2R A;  2VZC A;  4LVP A;  2QJZ A;  1VKA A;  1P2X A;  2D88 A;  5A36 A;  2VZG B;  1PA7 A;  1WYR A;  1V5K A;  3JAL M;  3HOP A;  3JAK M;  1WYN A;  2D85 A;  5FMU A;  2EYI A;  2QJX A;  3EAY A;  1TJT A;  2D86 A;  2VE7 C;  2HKP A;  1QAG A;  5BVR A;  3HOR A;  2WFN A;  5L0O A;  2EE7 A;  1EUV A;  1WJO A;  2WE6 A;  1RT8 A;  3KMW B;  2JV9 A;  1AA2 A;  4Q58 A;  2DK9 A;  2R8U A;  1WYM A;  2WA6 A;  2R0O A;  2YRN A;  2EYN A;  4Q57 B;  1SH5 A;  1BHD A;  2D89 A;  3REP B;  2EQO A;  2VZD A;  3CO1 A;  5J8E A;  4EDM A;  4EDN A;  2K3S A;  1DXX A;  1AOA A;  1SH6 A;  1BKR A;  3JAR M;  4EDL A;  2RR8 A;  2L3G A;  1WYP A;  1UEG A;  1MB8 A;  3F7P A;  5A37 A;  5FMT A;  4B7L A;  2HL8 A;  1P5S A;  3I6X A;  2HL9 A;  2D87 A;  2WA5 A;  1WYO A; 
#chains in the Genus database with same CATH homology
 1WKU A;  4Q59 A;  3KMU B;  2E9K A;  4TXI A;  1WYL A;  4TXK A;  1H67 A;  5A4B A;  1PXY A;  1WYQ A;  1UJO A;  3KY9 A;  2VZI B;  5A38 A;  2WA7 A;  3FER A;  3HOC A;  1WIX A;  2K2R A;  2VZC A;  2QJZ A;  1VKA A;  1P2X A;  2D88 A;  5A36 A;  2VZG B;  1PA7 A;  1WYR A;  1V5K A;  3JAL M;  3HOP A;  3JAK M;  1WYN A;  2D85 A;  2EYI A;  2QJX A;  1TJT A;  2D86 A;  1QAG A;  5BVR A;  3HOR A;  2WFN A;  5L0O A;  2EE7 A;  1WJO A;  3KMW B;  1RT8 A;  2JV9 A;  1AA2 A;  4Q58 A;  2DK9 A;  2R8U A;  1WYM A;  2WA6 A;  2R0O A;  2YRN A;  2EYN A;  4Q57 B;  1SH5 A;  1BHD A;  2D89 A;  3REP B;  2VZD A;  3CO1 A;  5J8E A;  4EDM A;  4EDN A;  2K3S A;  1DXX A;  1AOA A;  1SH6 A;  1BKR A;  3JAR M;  4EDL A;  2RR8 A;  2L3G A;  1WYP A;  1UEG A;  1MB8 A;  3F7P A;  5A37 A;  4B7L A;  1P5S A;  3I6X A;  2D87 A;  2WA5 A;  1WYO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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