4Q58A

Crystal structure of the plectin 1a actin-binding domain/integrin beta 4 fragment complex
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
225
structure length
225
Chain Sequence
DERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein/protein binding
molecule keywords Plectin
publication title Crystal structure of the plectin 1a actin-binding domain/integrin beta 4 fragment complex
rcsb
total genus 65
structure length 225
sequence length 225
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4q58A02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4q58A01
1WYMA 2RR8A 3KMUB 1WYLA 1DXXA 2JV9A 2E9KA 4Q59A 2QJXA 2EE7A 4Q58A 5L0OA 2VZDA 1V5KA 1MB8A 3CO1A 2D86A 1WKUA 1P2XA 5A36A 1P5SA 2D85A 2R0OA 3FERA 1WYPA 2QJZA 5A4BA 1AOAA 4TXKA 3HORA 1WJOA 2YRNA 1RT8A 1VKAA 3JAKM 2WA6A 3REPB 2VZIB 3F7PA 3HOPA 2WA7A 1WYNA 1QAGA 3JARM 3I6XA 3KMWB 1PA7A 1UEGA 2K2RA 4EDNA 1UJOA 2WFNA 3KY9A 2WA5A 2VZGB 2DK9A 2D88A 1TJTA 2K3SA 2VZCA 3HOCA 1SH5A 2D87A 1SH6A 2EYIA 4EDLA 4Q57B 1WYQA 5A37A 4EDMA 4B7LA 1BKRA 1WYRA 1WIXA 1AA2A 1WYOA 1H67A 1PXYA 2D89A 4TXIA 5J8EA 2R8UA 1BHDA 2EYNA 5A38A 3JALM 2L3GA 5BVRA
chains in the Genus database with same CATH superfamily
1WYMA 2RR8A 3KMUB 1WYLA 1DXXA 2JV9A 2E9KA 4Q59A 2QJXA 5FMTA 2EE7A 4Q58A 2IGPA 5L0OA 2VZDA 1V5KA 1MB8A 3CO1A 3EAYA 2D86A 1WKUA 1P2XA 5A36A 1P5SA 2D85A 2R0OA 3FERA 1WYPA 2QJZA 5A4BA 1AOAA 4TXKA 3HORA 1WJOA 2YRNA 1RT8A 2WDTA 1VKAA 2HL8A 3JAKM 2WA6A 3REPB 2VZIB 2EQOA 3F7PA 3HOPA 2WA7A 5FMUA 1WYNA 1QAGA 3JARM 2VE7A 3I6XA 3KMWB 1PA7A 1UEGA 2K2RA 4EDNA 1UJOA 2WFNA 3KY9A 2WA5A 1EUVA 2VZGB 2DK9A 2D88A 1TJTA 2K3SA 2VZCA 3HOCA 1SH5A 4LVPA 4DDPA 2D87A 1SH6A 2EYIA 4EDLA 2VE7C 1WYQA 4Q57B 5A37A 4EDMA 2WE6A 4B7LA 1BKRA 1WYRA 1WIXA 2HKPA 1AA2A 1WYOA 1H67A 1PXYA 4LVRA 2D89A 4TXIA 5J8EA 3VP7A 2HL9A 2R8UA 1BHDA 2EYNA 5A38A 3JALM 2L3GA 5BVRA
chains in the Genus database with same CATH topology
1WYMA 2RR8A 3KMUB 1WYLA 1DXXA 2JV9A 2E9KA 4Q59A 2QJXA 2EE7A 4Q58A 5L0OA 2VZDA 1V5KA 1MB8A 3CO1A 2D86A 1WKUA 1P2XA 5A36A 1P5SA 2D85A 2R0OA 3FERA 1WYPA 2QJZA 5A4BA 1AOAA 4TXKA 3HORA 1WJOA 2YRNA 1RT8A 1VKAA 3JAKM 2WA6A 3REPB 2VZIB 3F7PA 3HOPA 2WA7A 1WYNA 1QAGA 3JARM 3I6XA 3KMWB 1PA7A 1UEGA 2K2RA 4EDNA 1UJOA 2WFNA 3KY9A 2WA5A 2VZGB 2DK9A 2D88A 1TJTA 2K3SA 2VZCA 3HOCA 1SH5A 2D87A 1SH6A 2EYIA 4EDLA 4Q57B 1WYQA 5A37A 4EDMA 4B7LA 1BKRA 1WYRA 1WIXA 1AA2A 1WYOA 1H67A 1PXYA 2D89A 4TXIA 5J8EA 2R8UA 1BHDA 2EYNA 5A38A 3JALM 2L3GA 5BVRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WYM A;  2RR8 A;  3KMU B;  1WYL A;  1DXX A;  2JV9 A;  2E9K A;  4Q59 A;  2QJX A;  2EE7 A;  4Q58 A;  5L0O A;  2VZD A;  1V5K A;  1MB8 A;  3CO1 A;  2D86 A;  1WKU A;  1P2X A;  5A36 A;  1P5S A;  2D85 A;  2R0O A;  3FER A;  1WYP A;  2QJZ A;  5A4B A;  1AOA A;  4TXK A;  3HOR A;  1WJO A;  2YRN A;  1RT8 A;  1VKA A;  3JAK M;  2WA6 A;  3REP B;  2VZI B;  3F7P A;  3HOP A;  2WA7 A;  1WYN A;  1QAG A;  3JAR M;  3I6X A;  3KMW B;  1PA7 A;  1UEG A;  2K2R A;  4EDN A;  1UJO A;  2WFN A;  3KY9 A;  2WA5 A;  2VZG B;  2DK9 A;  2D88 A;  1TJT A;  2K3S A;  2VZC A;  3HOC A;  1SH5 A;  2D87 A;  1SH6 A;  2EYI A;  4EDL A;  4Q57 B;  1WYQ A;  5A37 A;  4EDM A;  4B7L A;  1BKR A;  1WYR A;  1WIX A;  1AA2 A;  1WYO A;  1H67 A;  1PXY A;  2D89 A;  4TXI A;  5J8E A;  2R8U A;  1BHD A;  2EYN A;  5A38 A;  3JAL M;  2L3G A;  5BVR A; 
#chains in the Genus database with same CATH topology
 1WYM A;  2RR8 A;  3KMU B;  1WYL A;  1DXX A;  2JV9 A;  2E9K A;  4Q59 A;  2QJX A;  5FMT A;  2EE7 A;  4Q58 A;  2IGP A;  5L0O A;  2VZD A;  1V5K A;  1MB8 A;  3CO1 A;  3EAY A;  2D86 A;  1WKU A;  1P2X A;  5A36 A;  1P5S A;  2D85 A;  2R0O A;  3FER A;  1WYP A;  2QJZ A;  5A4B A;  1AOA A;  4TXK A;  3HOR A;  1WJO A;  2YRN A;  1RT8 A;  2WDT A;  1VKA A;  2HL8 A;  3JAK M;  2WA6 A;  3REP B;  2VZI B;  2EQO A;  3F7P A;  3HOP A;  2WA7 A;  5FMU A;  1WYN A;  1QAG A;  3JAR M;  2VE7 A;  3I6X A;  3KMW B;  1PA7 A;  1UEG A;  2K2R A;  4EDN A;  1UJO A;  2WFN A;  3KY9 A;  2WA5 A;  1EUV A;  2VZG B;  2DK9 A;  2D88 A;  1TJT A;  2K3S A;  2VZC A;  3HOC A;  1SH5 A;  4LVP A;  4DDP A;  2D87 A;  1SH6 A;  2EYI A;  4EDL A;  2VE7 C;  1WYQ A;  4Q57 B;  5A37 A;  4EDM A;  2WE6 A;  4B7L A;  1BKR A;  1WYR A;  1WIX A;  2HKP A;  1AA2 A;  1WYO A;  1H67 A;  1PXY A;  4LVR A;  2D89 A;  4TXI A;  5J8E A;  3VP7 A;  2HL9 A;  2R8U A;  1BHD A;  2EYN A;  5A38 A;  3JAL M;  2L3G A;  5BVR A; 
#chains in the Genus database with same CATH homology
 1WYM A;  2RR8 A;  3KMU B;  1WYL A;  1DXX A;  2JV9 A;  2E9K A;  4Q59 A;  2QJX A;  2EE7 A;  4Q58 A;  5L0O A;  2VZD A;  1V5K A;  1MB8 A;  3CO1 A;  2D86 A;  1WKU A;  1P2X A;  5A36 A;  1P5S A;  2D85 A;  2R0O A;  3FER A;  1WYP A;  2QJZ A;  5A4B A;  1AOA A;  4TXK A;  3HOR A;  1WJO A;  2YRN A;  1RT8 A;  1VKA A;  3JAK M;  2WA6 A;  3REP B;  2VZI B;  3F7P A;  3HOP A;  2WA7 A;  1WYN A;  1QAG A;  3JAR M;  3I6X A;  3KMW B;  1PA7 A;  1UEG A;  2K2R A;  4EDN A;  1UJO A;  2WFN A;  3KY9 A;  2WA5 A;  2VZG B;  2DK9 A;  2D88 A;  1TJT A;  2K3S A;  2VZC A;  3HOC A;  1SH5 A;  2D87 A;  1SH6 A;  2EYI A;  4EDL A;  4Q57 B;  1WYQ A;  5A37 A;  4EDM A;  4B7L A;  1BKR A;  1WYR A;  1WIX A;  1AA2 A;  1WYO A;  1H67 A;  1PXY A;  2D89 A;  4TXI A;  5J8E A;  2R8U A;  1BHD A;  2EYN A;  5A38 A;  3JAL M;  2L3G A;  5BVR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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