4Q7GA

1.7 angstrom crystal structure of leukotoxin lukd from staphylococcus aureus.
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
300
structure length
300
Chain Sequence
AQHITPVSEKKVDDKITLYKTTATSDNDKLNISQILTFNFIKDKSYDKDTLVLKAAGNINSGYKKPNPKDYNYSQFYWGGKYNVSVSSESNDAVNVVDYAPKNQNEEFQVQQTLGYSYGGDINISNGLSGGLNGSKSFSETINYKQESYRTTIDRKTNHKSIGWGVEAHKIMNNGWGPYGRDSYDPTYGNELFLGGRQSSSNAGQNFLPTHQMPLLARGNFNPEFISVLSHKQNDTKKSKIKVTYQREMDRYTNQWNRLHWVGNNYKNQNTVTFTSTYEVDWQNHTVKLIGTDSKETNPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Leucotoxin LukDv
publication title Crystal structures of the components of the Staphylococcus aureus leukotoxin ED.
pubmed doi rcsb
source organism Staphylococcus aureus subsp. aureus
total genus 77
structure length 300
sequence length 300
ec nomenclature
pdb deposition date 2014-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 4q7gA00
3M3RA 3B07B 4TW1B 4J0OA 3M4DA 4P1YB 4I0NA 4IYTA 4P1XB 5K59C 3ROHA 4TW1A 2QK7B 3M2LA 3ANZA 3B07A 1LKFA 3M4EA 4IZLA 2YGTA 4P1YA 4U6VA 4P1XA 4YHDA 7AHLA 2LKFA 3LKFA 4Q7GA 1T5RA 4H56A 3O44A 2QK7A 4IYCA 4P24A 4IYAA 1PVLA 4IDJA 5K59A
chains in the Genus database with same CATH superfamily
3M3RA 3B07B 4TW1B 4J0OA 3M4DA 4P1YB 4I0NA 4IYTA 4P1XB 5K59C 3ROHA 4TW1A 2QK7B 3M2LA 3ANZA 3B07A 1LKFA 3M4EA 4IZLA 2YGTA 4P1YA 4U6VA 4P1XA 4YHDA 7AHLA 2LKFA 3LKFA 4Q7GA 1T5RA 4H56A 3O44A 2QK7A 4IYCA 4P24A 4IYAA 1XEZA 1PVLA 4IDJA 5K59A
chains in the Genus database with same CATH topology
3M3RA 3B07B 4TW1B 4J0OA 3M4DA 4P1YB 4I0NA 4IYTA 4P1XB 5K59C 3ROHA 4TW1A 2QK7B 3M2LA 3ANZA 3B07A 1LKFA 3M4EA 4IZLA 2YGTA 4P1YA 4U6VA 4P1XA 4YHDA 7AHLA 2LKFA 3LKFA 4Q7GA 1T5RA 4H56A 3O44A 2QK7A 4IYCA 4P24A 4IYAA 1PVLA 4IDJA 5K59A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M3R A;  3B07 B;  4TW1 B;  4J0O A;  3M4D A;  4P1Y B;  4I0N A;  4IYT A;  4P1X B;  5K59 C;  3ROH A;  4TW1 A;  2QK7 B;  3M2L A;  3ANZ A;  3B07 A;  1LKF A;  3M4E A;  4IZL A;  2YGT A;  4P1Y A;  4U6V A;  4P1X A;  4YHD A;  7AHL A;  2LKF A;  3LKF A;  4Q7G A;  1T5R A;  4H56 A;  3O44 A;  2QK7 A;  4IYC A;  4P24 A;  4IYA A;  1PVL A;  4IDJ A;  5K59 A; 
#chains in the Genus database with same CATH topology
 3M3R A;  3B07 B;  4TW1 B;  4J0O A;  3M4D A;  4P1Y B;  4I0N A;  4IYT A;  4P1X B;  5K59 C;  3ROH A;  4TW1 A;  2QK7 B;  3M2L A;  3ANZ A;  3B07 A;  1LKF A;  3M4E A;  4IZL A;  2YGT A;  4P1Y A;  4U6V A;  4P1X A;  4YHD A;  7AHL A;  2LKF A;  3LKF A;  4Q7G A;  1T5R A;  4H56 A;  3O44 A;  2QK7 A;  4IYC A;  4P24 A;  4IYA A;  1XEZ A;  1PVL A;  4IDJ A;  5K59 A; 
#chains in the Genus database with same CATH homology
 3M3R A;  3B07 B;  4TW1 B;  4J0O A;  3M4D A;  4P1Y B;  4I0N A;  4IYT A;  4P1X B;  5K59 C;  3ROH A;  4TW1 A;  2QK7 B;  3M2L A;  3ANZ A;  3B07 A;  1LKF A;  3M4E A;  4IZL A;  2YGT A;  4P1Y A;  4U6V A;  4P1X A;  4YHD A;  7AHL A;  2LKF A;  3LKF A;  4Q7G A;  1T5R A;  4H56 A;  3O44 A;  2QK7 A;  4IYC A;  4P24 A;  4IYA A;  1PVL A;  4IDJ A;  5K59 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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