4Q8SA

Crystal structure of mammalian peptidoglycan recognition protein pgrp-s with paranitrophenyl palmitate and n-acetyl glucosamine at 2.09 a resolution
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
171
structure length
171
Chain Sequence
EDPPACGSIVPRREWRALASECRERLTRPVRYVVVSHTAGSHCDTPASCAQQAQNVQSYHVRNLGWCDVGYNFLIGEDGLVYEGRGWNIKGAHAGPTWNPISIGISFMGNYMNRVPPPRALRAAQNLLACGVALGALRSNYEVKGHRDVQPTLSPGDRLYEIIQTWSHYRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Peptidoglycan recognition protein 1
publication title Crystal structure of mammalian Peptidoglycan recognition protein PGRP-S with paranitrophenyl palmitate and N-acetyl glucosamine at 2.09 A resolution
rcsb
total genus 56
structure length 171
sequence length 171
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 4q8sA00
3UMQA 3D2ZA 4ZXMA 5CTVA 1OHTA 2RKQA 2APHA 3TRUA 2WKXA 4Q9EA 4BXJA 4BXDA 3T2VA 3HMBA 2Z9NA 2R2KA 1Z6IA 4GF9A 3UILA 2F2LA 3NNOA 3NG4A 2XZ4A 3EP1A 1AROL 3NW3A 4OUGA 3CORA 2Y2EA 4BOLA 3C2XA 3RDRA 2Y2CA 2EAVA 4KNLA 2Y2DA 4Z8IA 3LATA 3UMLA 3QV4A 4BJ4A 4Q8SA 1SK3A 2Y28A 4BXEA 2CB3A 1SK4A 2EAXA 4OLSA 3O4KA 1S2JA 3CXAA 2BH7A 3QS0A 2R90A 4X36A 2AR3A 3OGXA 1SXRA 3T39A 3CG9A 1LBAA 4ORVA 4BPAA 3USXA 2L47A 2F2LX 1TWQA 1YB0A 3RT4A 2XZ8A 1YCKA 3QJ1A 4FNNA 5E0BA 4OPPA 5DWFA 1J3GA 4KNKA 2Y2BA 4IVVA 3D2YA 5E0AA
chains in the Genus database with same CATH superfamily
3UMQA 3D2ZA 4ZXMA 5CTVA 1OHTA 2RKQA 2APHA 3TRUA 2WKXA 4Q9EA 4BXJA 4BXDA 3T2VA 3HMBA 2Z9NA 2R2KA 1Z6IA 4GF9A 3UILA 2F2LA 3NNOA 3NG4A 2XZ4A 3EP1A 1AROL 3NW3A 4OUGA 3CORA 2Y2EA 4BOLA 3C2XA 3RDRA 2Y2CA 2EAVA 4KNLA 2Y2DA 4Z8IA 3LATA 3UMLA 3QV4A 4BJ4A 4Q8SA 1SK3A 2Y28A 4BXEA 2CB3A 1SK4A 2EAXA 4OLSA 3O4KA 1S2JA 3CXAA 2BH7A 3QS0A 2R90A 4X36A 2AR3A 3OGXA 1SXRA 3T39A 3CG9A 1LBAA 4ORVA 4BPAA 3USXA 2L47A 2F2LX 1TWQA 1YB0A 3RT4A 2XZ8A 1YCKA 3QJ1A 4FNNA 5E0BA 4OPPA 5DWFA 1J3GA 4KNKA 2Y2BA 4IVVA 3D2YA 5E0AA
chains in the Genus database with same CATH topology
3UMQA 3D2ZA 4ZXMA 5CTVA 1OHTA 2RKQA 2APHA 3TRUA 2WKXA 4Q9EA 4BXJA 4BXDA 3T2VA 3HMBA 2Z9NA 2R2KA 1Z6IA 4GF9A 3UILA 2F2LA 3NNOA 3NG4A 2XZ4A 3EP1A 1AROL 3NW3A 4OUGA 3CORA 2Y2EA 4BOLA 3C2XA 3RDRA 2Y2CA 2EAVA 4KNLA 2Y2DA 4Z8IA 3LATA 3UMLA 3QV4A 4BJ4A 4Q8SA 1SK3A 2Y28A 4BXEA 2CB3A 1SK4A 2EAXA 4OLSA 3O4KA 1S2JA 3CXAA 2BH7A 3QS0A 2R90A 4X36A 2AR3A 3OGXA 1SXRA 3T39A 3CG9A 1LBAA 4ORVA 4BPAA 3USXA 2L47A 2F2LX 1TWQA 1YB0A 3RT4A 2XZ8A 1YCKA 3QJ1A 4FNNA 5E0BA 4OPPA 5DWFA 1J3GA 4KNKA 2Y2BA 4IVVA 3D2YA 5E0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UMQ A;  3D2Z A;  4ZXM A;  5CTV A;  1OHT A;  2RKQ A;  2APH A;  3TRU A;  2WKX A;  4Q9E A;  4BXJ A;  4BXD A;  3T2V A;  3HMB A;  2Z9N A;  2R2K A;  1Z6I A;  4GF9 A;  3UIL A;  2F2L A;  3NNO A;  3NG4 A;  2XZ4 A;  3EP1 A;  1ARO L;  3NW3 A;  4OUG A;  3COR A;  2Y2E A;  4BOL A;  3C2X A;  3RDR A;  2Y2C A;  2EAV A;  4KNL A;  2Y2D A;  4Z8I A;  3LAT A;  3UML A;  3QV4 A;  4BJ4 A;  4Q8S A;  1SK3 A;  2Y28 A;  4BXE A;  2CB3 A;  1SK4 A;  2EAX A;  4OLS A;  3O4K A;  1S2J A;  3CXA A;  2BH7 A;  3QS0 A;  2R90 A;  4X36 A;  2AR3 A;  3OGX A;  1SXR A;  3T39 A;  3CG9 A;  1LBA A;  4ORV A;  4BPA A;  3USX A;  2L47 A;  2F2L X;  1TWQ A;  1YB0 A;  3RT4 A;  2XZ8 A;  1YCK A;  3QJ1 A;  4FNN A;  5E0B A;  4OPP A;  5DWF A;  1J3G A;  4KNK A;  2Y2B A;  4IVV A;  3D2Y A;  5E0A A; 
#chains in the Genus database with same CATH topology
 3UMQ A;  3D2Z A;  4ZXM A;  5CTV A;  1OHT A;  2RKQ A;  2APH A;  3TRU A;  2WKX A;  4Q9E A;  4BXJ A;  4BXD A;  3T2V A;  3HMB A;  2Z9N A;  2R2K A;  1Z6I A;  4GF9 A;  3UIL A;  2F2L A;  3NNO A;  3NG4 A;  2XZ4 A;  3EP1 A;  1ARO L;  3NW3 A;  4OUG A;  3COR A;  2Y2E A;  4BOL A;  3C2X A;  3RDR A;  2Y2C A;  2EAV A;  4KNL A;  2Y2D A;  4Z8I A;  3LAT A;  3UML A;  3QV4 A;  4BJ4 A;  4Q8S A;  1SK3 A;  2Y28 A;  4BXE A;  2CB3 A;  1SK4 A;  2EAX A;  4OLS A;  3O4K A;  1S2J A;  3CXA A;  2BH7 A;  3QS0 A;  2R90 A;  4X36 A;  2AR3 A;  3OGX A;  1SXR A;  3T39 A;  3CG9 A;  1LBA A;  4ORV A;  4BPA A;  3USX A;  2L47 A;  2F2L X;  1TWQ A;  1YB0 A;  3RT4 A;  2XZ8 A;  1YCK A;  3QJ1 A;  4FNN A;  5E0B A;  4OPP A;  5DWF A;  1J3G A;  4KNK A;  2Y2B A;  4IVV A;  3D2Y A;  5E0A A; 
#chains in the Genus database with same CATH homology
 3UMQ A;  3D2Z A;  4ZXM A;  5CTV A;  1OHT A;  2RKQ A;  2APH A;  3TRU A;  2WKX A;  4Q9E A;  4BXJ A;  4BXD A;  3T2V A;  3HMB A;  2Z9N A;  2R2K A;  1Z6I A;  4GF9 A;  3UIL A;  2F2L A;  3NNO A;  3NG4 A;  2XZ4 A;  3EP1 A;  1ARO L;  3NW3 A;  4OUG A;  3COR A;  2Y2E A;  4BOL A;  3C2X A;  3RDR A;  2Y2C A;  2EAV A;  4KNL A;  2Y2D A;  4Z8I A;  3LAT A;  3UML A;  3QV4 A;  4BJ4 A;  4Q8S A;  1SK3 A;  2Y28 A;  4BXE A;  2CB3 A;  1SK4 A;  2EAX A;  4OLS A;  3O4K A;  1S2J A;  3CXA A;  2BH7 A;  3QS0 A;  2R90 A;  4X36 A;  2AR3 A;  3OGX A;  1SXR A;  3T39 A;  3CG9 A;  1LBA A;  4ORV A;  4BPA A;  3USX A;  2L47 A;  2F2L X;  1TWQ A;  1YB0 A;  3RT4 A;  2XZ8 A;  1YCK A;  3QJ1 A;  4FNN A;  5E0B A;  4OPP A;  5DWF A;  1J3G A;  4KNK A;  2Y2B A;  4IVV A;  3D2Y A;  5E0A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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