4Q9VA

Crystal structure of tipe3
Total Genus 82
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
183
structure length
183
Chain Sequence
FSSKSLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHTHNKKEAHKIMKDLIKVAIKIGILYRNNQFSQEELVIVEKFRKKLNQTAMTIVSFYEVEYTFDRNVLSNLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKRICEGINKLLDEKVL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title TIPE3 Is the Transfer Protein of Lipid Second Messengers that Promote Cancer.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Immune system
molecule keywords Tumor necrosis factor alpha-induced protein 8-like protein 3
total genus 82
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05527 DUF758 Domain of unknown function (DUF758)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.160 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 4q9vA00
4Q9VA 3F4MA
chains in the Genus database with same CATH superfamily
4HFVA 3Q8DA 2RLDA 4AS3A 2KKMA 2YFAA 2QZGA 4Z7GA 4PL3A 4AS2A 3P23A 1W3SA 1TDPA 2JAEA 3IAM1 3FVVA 4Z7HA 1JQOA 3L0IA 3KP9A 4G76A 4HEA1 3DA3A 4O1PA 2MJFB 3SDJA 2ETDA 2CAZB 3AJFA 3IAS1 3LJ1A 4YZCA 2XTQA 4NV2A 3LJ0A 2YFBA 4YZ9A 3UITA 4U6RA 3FNBA 3DA4A 4Q9VA 3VA9A 3LJ2A 4GXTA 2XMXA 2E8GA 2QGMA 2A2CA 2BL8A 2JBWA 3FBVA 3B55A 5HGIA 2ZRRA 2K19A 2L1LB 4PL4A 2FU2A 2V6EA 2F66B 3DO9A 5LNK1 4I1TA 3JSBA 2GSCA 1U5KA 2P22B 3I9V1 4G75A 4PL5A 2JB1A 4O1OA 2JB2A 1YO7A 2V1CC 2JB3A 4OAVB 4OAUC 2F6MB 2IP6A 2FUG1 4YZDA 2ZW3A 2BL7A 2FEFA 4NV5A 4DWLA 1SJ8A 2A2DA 2RADA 2RIOA 3F4MA 4JCVE 2QSBA 2HGKA 2XTRA
chains in the Genus database with same CATH topology
1YO7A 3SDJA 2V1CC 2K19A 2L1LB 4HFVA 4PL4A 2CAZB 2JB3A 3AJFA 3Q8DA 4OAVB 4O1PA 4AS3A 2F6MB 2IP6A 2KKMA 2YFAA 2FUG1 3IAS1 3LJ1A 4YZCA 5HGIA 2V6EA 4YZDA 2F66B 3DO9A 2XTQA 4NV2A 4Z7GA 5LNK1 3LJ0A 4PL3A 2YFBA 4YZ9A 3UITA 4AS2A 4OAUC 3P23A 4U6RA 3DA4A 4Q9VA 3VA9A 1W3SA 2JAEA 4I1TA 3LJ2A 4GXTA 2XMXA 3IAM1 3JSBA 2E8GA 2XTRA 1U5KA 2P22B 3DA3A 4Z7HA 3I9V1 4JCVE 2A2CA 4G75A 4NV5A 3L0IA 3KP9A 4DWLA 4PL5A 1SJ8A 2A2DA 2RIOA 2JB1A 3F4MA 3FBVA 4G76A 4HEA1 2ZRRA 4O1OA 2JB2A 2MJFB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q9V A;  3F4M A; 
#chains in the Genus database with same CATH topology
 4HFV A;  3Q8D A;  2RLD A;  4AS3 A;  2KKM A;  2YFA A;  2QZG A;  4Z7G A;  4PL3 A;  4AS2 A;  3P23 A;  1W3S A;  1TDP A;  2JAE A;  3IAM 1;  3FVV A;  4Z7H A;  1JQO A;  3L0I A;  3KP9 A;  4G76 A;  4HEA 1;  3DA3 A;  4O1P A;  2MJF B;  3SDJ A;  2ETD A;  2CAZ B;  3AJF A;  3IAS 1;  3LJ1 A;  4YZC A;  2XTQ A;  4NV2 A;  3LJ0 A;  2YFB A;  4YZ9 A;  3UIT A;  4U6R A;  3FNB A;  3DA4 A;  4Q9V A;  3VA9 A;  3LJ2 A;  4GXT A;  2XMX A;  2E8G A;  2QGM A;  2A2C A;  2BL8 A;  2JBW A;  3FBV A;  3B55 A;  5HGI A;  2ZRR A;  2K19 A;  2L1L B;  4PL4 A;  2FU2 A;  2V6E A;  2F66 B;  3DO9 A;  5LNK 1;  4I1T A;  3JSB A;  2GSC A;  1U5K A;  2P22 B;  3I9V 1;  4G75 A;  4PL5 A;  2JB1 A;  4O1O A;  2JB2 A;  1YO7 A;  2V1C C;  2JB3 A;  4OAV B;  4OAU C;  2F6M B;  2IP6 A;  2FUG 1;  4YZD A;  2ZW3 A;  2BL7 A;  2FEF A;  4NV5 A;  4DWL A;  1SJ8 A;  2A2D A;  2RAD A;  2RIO A;  3F4M A;  4JCV E;  2QSB A;  2HGK A;  2XTR A; 
#chains in the Genus database with same CATH homology
 1YO7 A;  3SDJ A;  2V1C C;  2K19 A;  2L1L B;  4HFV A;  4PL4 A;  2CAZ B;  2JB3 A;  3AJF A;  3Q8D A;  4OAV B;  4O1P A;  4AS3 A;  2F6M B;  2IP6 A;  2KKM A;  2YFA A;  2FUG 1;  3IAS 1;  3LJ1 A;  4YZC A;  5HGI A;  2V6E A;  4YZD A;  2F66 B;  3DO9 A;  2XTQ A;  4NV2 A;  4Z7G A;  5LNK 1;  3LJ0 A;  4PL3 A;  2YFB A;  4YZ9 A;  3UIT A;  4AS2 A;  4OAU C;  3P23 A;  4U6R A;  3DA4 A;  4Q9V A;  3VA9 A;  1W3S A;  2JAE A;  4I1T A;  3LJ2 A;  4GXT A;  2XMX A;  3IAM 1;  3JSB A;  2E8G A;  2XTR A;  1U5K A;  2P22 B;  3DA3 A;  4Z7H A;  3I9V 1;  4JCV E;  2A2C A;  4G75 A;  4NV5 A;  3L0I A;  3KP9 A;  4DWL A;  4PL5 A;  1SJ8 A;  2A2D A;  2RIO A;  2JB1 A;  3F4M A;  3FBV A;  4G76 A;  4HEA 1;  2ZRR A;  4O1O A;  2JB2 A;  2MJF B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...