4Q9VA

Crystal structure of tipe3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
183
structure length
183
Chain Sequence
FSSKSLALQAQKKILSKIASKTVANMLIDDTSSEIFDELYKVTKEHTHNKKEAHKIMKDLIKVAIKIGILYRNNQFSQEELVIVEKFRKKLNQTAMTIVSFYEVEYTFDRNVLSNLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSLDGDCRPNLKRICEGINKLLDEKVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Tumor necrosis factor alpha-induced protein 8-like protein 3
publication title TIPE3 Is the Transfer Protein of Lipid Second Messengers that Promote Cancer.
pubmed doi rcsb
source organism Homo sapiens
total genus 82
structure length 183
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05527 DUF758 Domain of unknown function (DUF758)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.160 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 4q9vA00
3F4MA 4Q9VA
chains in the Genus database with same CATH superfamily
2ZRRA 2F6MB 5LNK1 2QSBA 4YZDA 4Z7HA 1JQOA 2BL8A 1SJ8A 3FNBA 2JB2A 4OAUC 2ZW3A 3UITA 4PL3A 2YFBA 2QZGA 2JAEA 4DWLA 2CAZB 2F66B 3IAM1 3Q8DA 4OAVB 3B55A 2RADA 2HGKA 4I1TA 4Q9VA 4AS2A 3IAS1 3L0IA 3I9V1 3JSBA 4G75A 4YZCA 2RLDA 2A2CA 2MJFB 2YFAA 2IP6A 1TDPA 3DA4A 2P22B 4O1OA 4AS3A 4GXTA 1YO7A 2V1CC 1U5KA 3P23A 3FVVA 2E8GA 2KKMA 2XTRA 2RIOA 4O1PA 2FU2A 2JB3A 2XTQA 3F4MA 4PL5A 3SDJA 3DA3A 3LJ1A 2FEFA 3DO9A 4NV5A 2V6EA 2ETDA 4JCVE 2K19A 2GSCA 3AJFA 3LJ2A 4PL4A 2L1LB 4HFVA 3KP9A 4HEA1 4U6RA 4NV2A 2JBWA 2JB1A 4G76A 4YZ9A 1W3SA 2QGMA 3LJ0A 4Z7GA 2BL7A 2FUG1 5HGIA 3VA9A 2XMXA 3FBVA 2A2DA
chains in the Genus database with same CATH topology
2ZRRA 2F6MB 5LNK1 4YZDA 4Z7HA 1SJ8A 2JB2A 4OAUC 3UITA 4PL3A 2YFBA 2JAEA 4DWLA 2CAZB 2F66B 3IAM1 3Q8DA 4OAVB 4I1TA 4Q9VA 4AS2A 3IAS1 3L0IA 3I9V1 3JSBA 4G75A 4YZCA 2A2CA 2MJFB 2YFAA 2IP6A 3DA4A 2P22B 4O1OA 4AS3A 4GXTA 1YO7A 2V1CC 1U5KA 3P23A 2E8GA 2KKMA 2XTRA 2RIOA 4O1PA 2JB3A 2XTQA 3F4MA 4PL5A 3SDJA 3DA3A 3LJ1A 3DO9A 4NV5A 2V6EA 4JCVE 2K19A 3AJFA 3LJ2A 4PL4A 2L1LB 4HFVA 3KP9A 4HEA1 4U6RA 4NV2A 2JB1A 4G76A 4YZ9A 1W3SA 3LJ0A 4Z7GA 2FUG1 5HGIA 3VA9A 2XMXA 3FBVA 2A2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F4M A;  4Q9V A; 
#chains in the Genus database with same CATH topology
 2ZRR A;  2F6M B;  5LNK 1;  2QSB A;  4YZD A;  4Z7H A;  1JQO A;  2BL8 A;  1SJ8 A;  3FNB A;  2JB2 A;  4OAU C;  2ZW3 A;  3UIT A;  4PL3 A;  2YFB A;  2QZG A;  2JAE A;  4DWL A;  2CAZ B;  2F66 B;  3IAM 1;  3Q8D A;  4OAV B;  3B55 A;  2RAD A;  2HGK A;  4I1T A;  4Q9V A;  4AS2 A;  3IAS 1;  3L0I A;  3I9V 1;  3JSB A;  4G75 A;  4YZC A;  2RLD A;  2A2C A;  2MJF B;  2YFA A;  2IP6 A;  1TDP A;  3DA4 A;  2P22 B;  4O1O A;  4AS3 A;  4GXT A;  1YO7 A;  2V1C C;  1U5K A;  3P23 A;  3FVV A;  2E8G A;  2KKM A;  2XTR A;  2RIO A;  4O1P A;  2FU2 A;  2JB3 A;  2XTQ A;  3F4M A;  4PL5 A;  3SDJ A;  3DA3 A;  3LJ1 A;  2FEF A;  3DO9 A;  4NV5 A;  2V6E A;  2ETD A;  4JCV E;  2K19 A;  2GSC A;  3AJF A;  3LJ2 A;  4PL4 A;  2L1L B;  4HFV A;  3KP9 A;  4HEA 1;  4U6R A;  4NV2 A;  2JBW A;  2JB1 A;  4G76 A;  4YZ9 A;  1W3S A;  2QGM A;  3LJ0 A;  4Z7G A;  2BL7 A;  2FUG 1;  5HGI A;  3VA9 A;  2XMX A;  3FBV A;  2A2D A; 
#chains in the Genus database with same CATH homology
 2ZRR A;  2F6M B;  5LNK 1;  4YZD A;  4Z7H A;  1SJ8 A;  2JB2 A;  4OAU C;  3UIT A;  4PL3 A;  2YFB A;  2JAE A;  4DWL A;  2CAZ B;  2F66 B;  3IAM 1;  3Q8D A;  4OAV B;  4I1T A;  4Q9V A;  4AS2 A;  3IAS 1;  3L0I A;  3I9V 1;  3JSB A;  4G75 A;  4YZC A;  2A2C A;  2MJF B;  2YFA A;  2IP6 A;  3DA4 A;  2P22 B;  4O1O A;  4AS3 A;  4GXT A;  1YO7 A;  2V1C C;  1U5K A;  3P23 A;  2E8G A;  2KKM A;  2XTR A;  2RIO A;  4O1P A;  2JB3 A;  2XTQ A;  3F4M A;  4PL5 A;  3SDJ A;  3DA3 A;  3LJ1 A;  3DO9 A;  4NV5 A;  2V6E A;  4JCV E;  2K19 A;  3AJF A;  3LJ2 A;  4PL4 A;  2L1L B;  4HFV A;  3KP9 A;  4HEA 1;  4U6R A;  4NV2 A;  2JB1 A;  4G76 A;  4YZ9 A;  1W3S A;  3LJ0 A;  4Z7G A;  2FUG 1;  5HGI A;  3VA9 A;  2XMX A;  3FBV A;  2A2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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