4QAXA

Crystal structure of post-catalytic binary complex of phosphoglycerate mutase from staphylococcus aureus
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
Knots found
sequence length
503
structure length
503
Chain Sequence
KKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title STRUCTURAL AND FUNCCTIONAL ANALYSIS of PHOSPHOGLYCERATE MUTASE from STAPHYLOCOCCUS AUREUS
rcsb
source organism Staphylococcus aureus subsp. aureus
molecule tags Isomerase
total genus 185
structure length 503
sequence length 503
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2014-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4qaxA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4qaxA02
5GRRA 1ALHA 5TJ3A 1ANIA 2XRGA 2W5RA 5AJ9A 1AJDA 5C66A 4ZGAA 5K4PA 4LQYA 4LRBA 1URBA 1KH9A 3SZYA 3NKRA 2D1GA 2IFYA 2RH6A 3BDGB 3MK1A 4MY4A 3TG0A 4NWJA 1AJBA 3IGZB 3DPCA 4UPIA 1EW9A 3B5QA 3M8ZA 2G9YA 3TX0A 3M7VA 2W5XA 3WAXA 2W8DA 4LRAA 4B56A 2W5QA 3NKQA 2ANHA 2GA3A 5DLVA 4LR7A 3T01A 4CXSA 3DYCA 1B8JA 4NWXA 1ALIA 2GSNA 1ZEBA 4KAYA 3ED4A 4MIVA 1ZEFA 4MHXA 4ZG9A 3OT9A 2X98A 3IDDA 5LIAA 5EGHA 3T02A 4FDJA 1EQJA 1EW2A 3TWZA 3NKPA 3WAWA 1Y7AA 4CXKA 2QZUA 5L0BA 3NKOA 1E33P 1KH7A 2ZKTA 2IUCA 5LQQA 2XR9A 3BDHA 5INHA 3LXQA 4LRCA 4LR8A 1ED9A 1N2LA 3IGYB 1Y6VA 5GOVA 1ZEDA 3WAYA 4UPHA 1KHLA 2W5TA 3M8WA 5IJQA 4UPLA 5L0EA 1SHNA 2GLQA 5HRTA 1ALJA 3KD8A 4FDIA 1E3CP 1KHNA 1KHKA 2IUCB 3CMRA 1ELXA 2W5VA 1O99A 1KH4A 1HDHA 2W5SA 1KH5A 3A52A 4KM4A 5DLWA 1EJJA 3NVLA 1AUKA 1P49A 4QAXA 4UOOA 4ZG6A 1FSUA 3MK0A 1AJAA 4LRFA 1SHQA 3WBHA 5IJSA 3UN5A 5LRMA 2W5WA 3SZZA 4TN0A 1AJCA 4KJDA 1ED8A 4UPKA 5LRNA 3E2DA 4UOPA 3UN2A 3BDGA 4YR1A 4GTWA 5EGEA 4GTXA 3UN3A 4LR2A 3UNYA 4KJGA 1N2KA 2VQRA 3M8YA 3Q3QA 1O98A 1ALKA 1EW8A 4CXUA 4GTZA 2GSOA 4KAVA 1HJKA 3UO0A 1URAA 3BDFA 4N7TA 4LREA 1ELYA 4GTYA 1ELZA 3NKMA 1E1ZP 1E2SP 5L0KA 3WAVA 3T00A 3NKNA 4UORA 2GSUA 3MK2A 1EI6A 1ANJA 1HQAA 1K7HA 1KHJA 4CYSA 4LR9A 4CYRA 4LRDA 4ZG7A 5KXAA 2W8SA 5DLTA
chains in the Genus database with same CATH superfamily
5GRRA 1ALHA 5TJ3A 1ANIA 2XRGA 2W5RA 5AJ9A 1AJDA 5C66A 4ZGAA 5K4PA 4LQYA 4LRBA 1URBA 1KH9A 3SZYA 3NKRA 2D1GA 2IFYA 2RH6A 3BDGB 3MK1A 4MY4A 3TG0A 4NWJA 1AJBA 3IGZB 3DPCA 4UPIA 1EW9A 3B5QA 3M8ZA 2G9YA 3TX0A 3M7VA 2W5XA 3WAXA 2W8DA 4LRAA 4B56A 2W5QA 3NKQA 2ANHA 2GA3A 5DLVA 4LR7A 3T01A 4CXSA 3DYCA 1B8JA 4NWXA 1ALIA 2GSNA 1ZEBA 4KAYA 3ED4A 4MIVA 1ZEFA 4MHXA 4ZG9A 3OT9A 2X98A 3IDDA 5LIAA 5EGHA 3T02A 4FDJA 1EQJA 1EW2A 3TWZA 3NKPA 3WAWA 1Y7AA 4CXKA 2QZUA 5L0BA 3NKOA 1E33P 1KH7A 2ZKTA 2IUCA 5LQQA 2XR9A 3BDHA 5INHA 3LXQA 4LRCA 4LR8A 1ED9A 1N2LA 3IGYB 1Y6VA 5GOVA 1ZEDA 3WAYA 4UPHA 1KHLA 2W5TA 3M8WA 5IJQA 4UPLA 5L0EA 1SHNA 2GLQA 5HRTA 1ALJA 3KD8A 4FDIA 1E3CP 1KHNA 1KHKA 2IUCB 3CMRA 1ELXA 2W5VA 1O99A 1KH4A 1HDHA 2W5SA 1KH5A 3A52A 4KM4A 5DLWA 1EJJA 3NVLA 1AUKA 1P49A 4QAXA 4UOOA 4ZG6A 1FSUA 3MK0A 1AJAA 4LRFA 1SHQA 3WBHA 5IJSA 3UN5A 5LRMA 2W5WA 3SZZA 4TN0A 1AJCA 4KJDA 1ED8A 4UPKA 5LRNA 3E2DA 4UOPA 3UN2A 3BDGA 4YR1A 4GTWA 5EGEA 4GTXA 3UN3A 4LR2A 3UNYA 4KJGA 1N2KA 2VQRA 3M8YA 3Q3QA 1O98A 1ALKA 1EW8A 4CXUA 4GTZA 2GSOA 4KAVA 1HJKA 3UO0A 1URAA 3BDFA 4N7TA 4LREA 1ELYA 4GTYA 1ELZA 3NKMA 1E1ZP 1E2SP 5L0KA 3WAVA 3T00A 3NKNA 4UORA 2GSUA 3MK2A 1EI6A 1ANJA 1HQAA 1K7HA 1KHJA 4CYSA 4LR9A 4CYRA 4LRDA 4ZG7A 5KXAA 2W8SA 5DLTA
chains in the Genus database with same CATH topology
5GRRA 1ALHA 5TJ3A 1ANIA 2XRGA 2W5RA 5AJ9A 1AJDA 5C66A 4ZGAA 5K4PA 4LQYA 4LRBA 1URBA 1KH9A 3SZYA 3NKRA 2D1GA 2IFYA 2RH6A 3BDGB 3MK1A 4MY4A 3TG0A 4NWJA 1AJBA 3IGZB 3DPCA 4UPIA 1EW9A 3B5QA 3M8ZA 2G9YA 3TX0A 3M7VA 2W5XA 3WAXA 2W8DA 4LRAA 4B56A 2W5QA 3NKQA 2ANHA 2GA3A 5DLVA 4LR7A 3T01A 4CXSA 3DYCA 1B8JA 4NWXA 1ALIA 2GSNA 1ZEBA 4KAYA 3ED4A 4MIVA 1ZEFA 4MHXA 4ZG9A 3OT9A 2X98A 3IDDA 5LIAA 5EGHA 3T02A 4FDJA 1EQJA 1EW2A 3TWZA 3NKPA 3WAWA 1Y7AA 4CXKA 2QZUA 5L0BA 3NKOA 1E33P 1KH7A 2ZKTA 2IUCA 5LQQA 2XR9A 3BDHA 5INHA 3LXQA 4LRCA 4LR8A 1ED9A 1N2LA 3IGYB 1Y6VA 5GOVA 1ZEDA 3WAYA 4UPHA 1KHLA 2W5TA 3M8WA 5IJQA 4UPLA 5L0EA 1SHNA 2GLQA 5HRTA 1ALJA 3KD8A 4FDIA 1E3CP 1KHNA 1KHKA 2IUCB 3CMRA 1ELXA 2W5VA 1O99A 1KH4A 1HDHA 2W5SA 1KH5A 3A52A 4KM4A 5DLWA 1EJJA 3NVLA 1AUKA 1P49A 4QAXA 4UOOA 4ZG6A 1FSUA 3MK0A 1AJAA 4LRFA 1SHQA 3WBHA 5IJSA 3UN5A 5LRMA 2W5WA 3SZZA 4TN0A 1AJCA 4KJDA 1ED8A 4UPKA 5LRNA 3E2DA 4UOPA 3UN2A 3BDGA 4YR1A 4GTWA 5EGEA 4GTXA 3UN3A 4LR2A 3UNYA 4KJGA 1N2KA 2VQRA 3M8YA 3Q3QA 1O98A 1ALKA 1EW8A 4CXUA 4GTZA 2GSOA 4KAVA 1HJKA 3UO0A 1URAA 3BDFA 4N7TA 4LREA 1ELYA 4GTYA 1ELZA 3NKMA 1E1ZP 1E2SP 5L0KA 3WAVA 3T00A 3NKNA 4UORA 2GSUA 3MK2A 1EI6A 1ANJA 1HQAA 1K7HA 1KHJA 4CYSA 4LR9A 4CYRA 4LRDA 4ZG7A 5KXAA 2W8SA 5DLTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GRR A;  1ALH A;  5TJ3 A;  1ANI A;  2XRG A;  2W5R A;  5AJ9 A;  1AJD A;  5C66 A;  4ZGA A;  5K4P A;  4LQY A;  4LRB A;  1URB A;  1KH9 A;  3SZY A;  3NKR A;  2D1G A;  2IFY A;  2RH6 A;  3BDG B;  3MK1 A;  4MY4 A;  3TG0 A;  4NWJ A;  1AJB A;  3IGZ B;  3DPC A;  4UPI A;  1EW9 A;  3B5Q A;  3M8Z A;  2G9Y A;  3TX0 A;  3M7V A;  2W5X A;  3WAX A;  2W8D A;  4LRA A;  4B56 A;  2W5Q A;  3NKQ A;  2ANH A;  2GA3 A;  5DLV A;  4LR7 A;  3T01 A;  4CXS A;  3DYC A;  1B8J A;  4NWX A;  1ALI A;  2GSN A;  1ZEB A;  4KAY A;  3ED4 A;  4MIV A;  1ZEF A;  4MHX A;  4ZG9 A;  3OT9 A;  2X98 A;  3IDD A;  5LIA A;  5EGH A;  3T02 A;  4FDJ A;  1EQJ A;  1EW2 A;  3TWZ A;  3NKP A;  3WAW A;  1Y7A A;  4CXK A;  2QZU A;  5L0B A;  3NKO A;  1E33 P;  1KH7 A;  2ZKT A;  2IUC A;  5LQQ A;  2XR9 A;  3BDH A;  5INH A;  3LXQ A;  4LRC A;  4LR8 A;  1ED9 A;  1N2L A;  3IGY B;  1Y6V A;  5GOV A;  1ZED A;  3WAY A;  4UPH A;  1KHL A;  2W5T A;  3M8W A;  5IJQ A;  4UPL A;  5L0E A;  1SHN A;  2GLQ A;  5HRT A;  1ALJ A;  3KD8 A;  4FDI A;  1E3C P;  1KHN A;  1KHK A;  2IUC B;  3CMR A;  1ELX A;  2W5V A;  1O99 A;  1KH4 A;  1HDH A;  2W5S A;  1KH5 A;  3A52 A;  4KM4 A;  5DLW A;  1EJJ A;  3NVL A;  1AUK A;  1P49 A;  4QAX A;  4UOO A;  4ZG6 A;  1FSU A;  3MK0 A;  1AJA A;  4LRF A;  1SHQ A;  3WBH A;  5IJS A;  3UN5 A;  5LRM A;  2W5W A;  3SZZ A;  4TN0 A;  1AJC A;  4KJD A;  1ED8 A;  4UPK A;  5LRN A;  3E2D A;  4UOP A;  3UN2 A;  3BDG A;  4YR1 A;  4GTW A;  5EGE A;  4GTX A;  3UN3 A;  4LR2 A;  3UNY A;  4KJG A;  1N2K A;  2VQR A;  3M8Y A;  3Q3Q A;  1O98 A;  1ALK A;  1EW8 A;  4CXU A;  4GTZ A;  2GSO A;  4KAV A;  1HJK A;  3UO0 A;  1URA A;  3BDF A;  4N7T A;  4LRE A;  1ELY A;  4GTY A;  1ELZ A;  3NKM A;  1E1Z P;  1E2S P;  5L0K A;  3WAV A;  3T00 A;  3NKN A;  4UOR A;  2GSU A;  3MK2 A;  1EI6 A;  1ANJ A;  1HQA A;  1K7H A;  1KHJ A;  4CYS A;  4LR9 A;  4CYR A;  4LRD A;  4ZG7 A;  5KXA A;  2W8S A;  5DLT A; 
#chains in the Genus database with same CATH topology
 5GRR A;  1ALH A;  5TJ3 A;  1ANI A;  2XRG A;  2W5R A;  5AJ9 A;  1AJD A;  5C66 A;  4ZGA A;  5K4P A;  4LQY A;  4LRB A;  1URB A;  1KH9 A;  3SZY A;  3NKR A;  2D1G A;  2IFY A;  2RH6 A;  3BDG B;  3MK1 A;  4MY4 A;  3TG0 A;  4NWJ A;  1AJB A;  3IGZ B;  3DPC A;  4UPI A;  1EW9 A;  3B5Q A;  3M8Z A;  2G9Y A;  3TX0 A;  3M7V A;  2W5X A;  3WAX A;  2W8D A;  4LRA A;  4B56 A;  2W5Q A;  3NKQ A;  2ANH A;  2GA3 A;  5DLV A;  4LR7 A;  3T01 A;  4CXS A;  3DYC A;  1B8J A;  4NWX A;  1ALI A;  2GSN A;  1ZEB A;  4KAY A;  3ED4 A;  4MIV A;  1ZEF A;  4MHX A;  4ZG9 A;  3OT9 A;  2X98 A;  3IDD A;  5LIA A;  5EGH A;  3T02 A;  4FDJ A;  1EQJ A;  1EW2 A;  3TWZ A;  3NKP A;  3WAW A;  1Y7A A;  4CXK A;  2QZU A;  5L0B A;  3NKO A;  1E33 P;  1KH7 A;  2ZKT A;  2IUC A;  5LQQ A;  2XR9 A;  3BDH A;  5INH A;  3LXQ A;  4LRC A;  4LR8 A;  1ED9 A;  1N2L A;  3IGY B;  1Y6V A;  5GOV A;  1ZED A;  3WAY A;  4UPH A;  1KHL A;  2W5T A;  3M8W A;  5IJQ A;  4UPL A;  5L0E A;  1SHN A;  2GLQ A;  5HRT A;  1ALJ A;  3KD8 A;  4FDI A;  1E3C P;  1KHN A;  1KHK A;  2IUC B;  3CMR A;  1ELX A;  2W5V A;  1O99 A;  1KH4 A;  1HDH A;  2W5S A;  1KH5 A;  3A52 A;  4KM4 A;  5DLW A;  1EJJ A;  3NVL A;  1AUK A;  1P49 A;  4QAX A;  4UOO A;  4ZG6 A;  1FSU A;  3MK0 A;  1AJA A;  4LRF A;  1SHQ A;  3WBH A;  5IJS A;  3UN5 A;  5LRM A;  2W5W A;  3SZZ A;  4TN0 A;  1AJC A;  4KJD A;  1ED8 A;  4UPK A;  5LRN A;  3E2D A;  4UOP A;  3UN2 A;  3BDG A;  4YR1 A;  4GTW A;  5EGE A;  4GTX A;  3UN3 A;  4LR2 A;  3UNY A;  4KJG A;  1N2K A;  2VQR A;  3M8Y A;  3Q3Q A;  1O98 A;  1ALK A;  1EW8 A;  4CXU A;  4GTZ A;  2GSO A;  4KAV A;  1HJK A;  3UO0 A;  1URA A;  3BDF A;  4N7T A;  4LRE A;  1ELY A;  4GTY A;  1ELZ A;  3NKM A;  1E1Z P;  1E2S P;  5L0K A;  3WAV A;  3T00 A;  3NKN A;  4UOR A;  2GSU A;  3MK2 A;  1EI6 A;  1ANJ A;  1HQA A;  1K7H A;  1KHJ A;  4CYS A;  4LR9 A;  4CYR A;  4LRD A;  4ZG7 A;  5KXA A;  2W8S A;  5DLT A; 
#chains in the Genus database with same CATH homology
 5GRR A;  1ALH A;  5TJ3 A;  1ANI A;  2XRG A;  2W5R A;  5AJ9 A;  1AJD A;  5C66 A;  4ZGA A;  5K4P A;  4LQY A;  4LRB A;  1URB A;  1KH9 A;  3SZY A;  3NKR A;  2D1G A;  2IFY A;  2RH6 A;  3BDG B;  3MK1 A;  4MY4 A;  3TG0 A;  4NWJ A;  1AJB A;  3IGZ B;  3DPC A;  4UPI A;  1EW9 A;  3B5Q A;  3M8Z A;  2G9Y A;  3TX0 A;  3M7V A;  2W5X A;  3WAX A;  2W8D A;  4LRA A;  4B56 A;  2W5Q A;  3NKQ A;  2ANH A;  2GA3 A;  5DLV A;  4LR7 A;  3T01 A;  4CXS A;  3DYC A;  1B8J A;  4NWX A;  1ALI A;  2GSN A;  1ZEB A;  4KAY A;  3ED4 A;  4MIV A;  1ZEF A;  4MHX A;  4ZG9 A;  3OT9 A;  2X98 A;  3IDD A;  5LIA A;  5EGH A;  3T02 A;  4FDJ A;  1EQJ A;  1EW2 A;  3TWZ A;  3NKP A;  3WAW A;  1Y7A A;  4CXK A;  2QZU A;  5L0B A;  3NKO A;  1E33 P;  1KH7 A;  2ZKT A;  2IUC A;  5LQQ A;  2XR9 A;  3BDH A;  5INH A;  3LXQ A;  4LRC A;  4LR8 A;  1ED9 A;  1N2L A;  3IGY B;  1Y6V A;  5GOV A;  1ZED A;  3WAY A;  4UPH A;  1KHL A;  2W5T A;  3M8W A;  5IJQ A;  4UPL A;  5L0E A;  1SHN A;  2GLQ A;  5HRT A;  1ALJ A;  3KD8 A;  4FDI A;  1E3C P;  1KHN A;  1KHK A;  2IUC B;  3CMR A;  1ELX A;  2W5V A;  1O99 A;  1KH4 A;  1HDH A;  2W5S A;  1KH5 A;  3A52 A;  4KM4 A;  5DLW A;  1EJJ A;  3NVL A;  1AUK A;  1P49 A;  4QAX A;  4UOO A;  4ZG6 A;  1FSU A;  3MK0 A;  1AJA A;  4LRF A;  1SHQ A;  3WBH A;  5IJS A;  3UN5 A;  5LRM A;  2W5W A;  3SZZ A;  4TN0 A;  1AJC A;  4KJD A;  1ED8 A;  4UPK A;  5LRN A;  3E2D A;  4UOP A;  3UN2 A;  3BDG A;  4YR1 A;  4GTW A;  5EGE A;  4GTX A;  3UN3 A;  4LR2 A;  3UNY A;  4KJG A;  1N2K A;  2VQR A;  3M8Y A;  3Q3Q A;  1O98 A;  1ALK A;  1EW8 A;  4CXU A;  4GTZ A;  2GSO A;  4KAV A;  1HJK A;  3UO0 A;  1URA A;  3BDF A;  4N7T A;  4LRE A;  1ELY A;  4GTY A;  1ELZ A;  3NKM A;  1E1Z P;  1E2S P;  5L0K A;  3WAV A;  3T00 A;  3NKN A;  4UOR A;  2GSU A;  3MK2 A;  1EI6 A;  1ANJ A;  1HQA A;  1K7H A;  1KHJ A;  4CYS A;  4LR9 A;  4CYR A;  4LRD A;  4ZG7 A;  5KXA A;  2W8S A;  5DLT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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