4QAXA

Crystal structure of post-catalytic binary complex of phosphoglycerate mutase from staphylococcus aureus
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
Knots found
sequence length
503
structure length
503
Chain Sequence
KKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title STRUCTURAL AND FUNCCTIONAL ANALYSIS of PHOSPHOGLYCERATE MUTASE from STAPHYLOCOCCUS AUREUS
rcsb
source organism Staphylococcus aureus subsp. aureus
molecule tags Isomerase
total genus 185
structure length 503
sequence length 503
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2014-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4qaxA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4qaxA02
1KH5A 2XRGA 4KJDA 4LRAA 4LR8A 4GTXA 2W5QA 4TN0A 3M8YA 1KHLA 5AJ9A 4FDIA 1ELZA 3IGYB 5KXAA 3UN3A 4LRBA 1HQAA 1EW2A 3WAYA 3M8ZA 3WAVA 1ALHA 1EJJA 2X98A 2IUCB 4LRDA 4ZG6A 5HRTA 2W5RA 4UOPA 1P49A 2W5SA 1ELXA 4ZGAA 4QAXA 5EGEA 5IJSA 3NKOA 1E3CP 4LREA 5GOVA 4YR1A 5L0BA 3MK2A 3NKMA 2IUCA 3IGZB 1EW8A 3UO0A 1B8JA 4ZG9A 5K4PA 4CXKA 3TX0A 2GSNA 4UPKA 5LQQA 2IFYA 1ZEBA 3E2DA 1ZEFA 2XR9A 3WBHA 5LRNA 1Y7AA 1E2SP 1ALIA 1O98A 1N2LA 1URAA 1SHQA 2W5WA 3OT9A 4CXUA 5GRRA 1URBA 1AJBA 1E1ZP 3SZZA 3NVLA 4UPHA 3TWZA 3BDFA 3WAWA 1Y6VA 3BDGA 3CMRA 4CYRA 1EQJA 1KHKA 1SHNA 2W8SA 1KH4A 3KD8A 3NKNA 3M8WA 5LRMA 1HJKA 5DLVA 2W5XA 3T00A 2G9YA 3TG0A 1AJDA 5TJ3A 3DPCA 3Q3QA 4MHXA 3NKQA 3BDGB 3DYCA 2QZUA 4CXSA 4NWJA 1ANIA 4GTWA 4KJGA 3SZYA 5IJQA 5LIAA 1O99A 1ANJA 4UORA 1HDHA 2D1GA 4UPLA 4KAVA 4LRFA 4MY4A 2GSUA 2RH6A 4N7TA 2GA3A 4LRCA 4GTZA 1FSUA 4LR9A 1KH7A 3MK0A 2VQRA 3T02A 1ZEDA 3A52A 3UN2A 5EGHA 5L0EA 5DLTA 5INHA 4MIVA 4FDJA 4ZG7A 2W5VA 1AJCA 1ALJA 2ZKTA 1N2KA 4LQYA 4GTYA 4KAYA 2W8DA 1ED8A 4UOOA 2GLQA 2W5TA 4NWXA 5DLWA 1KHJA 3BDHA 1E33P 1ELYA 5C66A 3WAXA 4UPIA 4B56A 1KHNA 4CYSA 3M7VA 4KM4A 2ANHA 1K7HA 1EW9A 3UN5A 3ED4A 1AJAA 1KH9A 5L0KA 3NKRA 3NKPA 1EI6A 3T01A 1AUKA 4LR7A 3LXQA 2GSOA 3B5QA 3MK1A 4LR2A 1ED9A 3IDDA 3UNYA 1ALKA
chains in the Genus database with same CATH superfamily
1KH5A 2XRGA 4KJDA 4LRAA 4LR8A 4GTXA 2W5QA 4TN0A 3M8YA 1KHLA 5AJ9A 4FDIA 1ELZA 3IGYB 5KXAA 3UN3A 4LRBA 1HQAA 1EW2A 3WAYA 3M8ZA 3WAVA 1ALHA 1EJJA 2X98A 2IUCB 4LRDA 4ZG6A 5HRTA 2W5RA 4UOPA 1P49A 2W5SA 1ELXA 4ZGAA 4QAXA 5EGEA 5IJSA 3NKOA 1E3CP 4LREA 5GOVA 4YR1A 5L0BA 3MK2A 3NKMA 2IUCA 3IGZB 1EW8A 3UO0A 1B8JA 4ZG9A 5K4PA 4CXKA 3TX0A 2GSNA 4UPKA 5LQQA 2IFYA 1ZEBA 3E2DA 1ZEFA 2XR9A 3WBHA 5LRNA 1Y7AA 1E2SP 1ALIA 1O98A 1N2LA 1URAA 1SHQA 2W5WA 3OT9A 4CXUA 5GRRA 1URBA 1AJBA 1E1ZP 3SZZA 3NVLA 4UPHA 3TWZA 3BDFA 3WAWA 1Y6VA 3BDGA 3CMRA 4CYRA 1EQJA 1KHKA 1SHNA 2W8SA 1KH4A 3KD8A 3NKNA 3M8WA 5LRMA 1HJKA 5DLVA 2W5XA 3T00A 2G9YA 3TG0A 1AJDA 5TJ3A 3DPCA 3Q3QA 4MHXA 3NKQA 3BDGB 3DYCA 2QZUA 4CXSA 4NWJA 1ANIA 4GTWA 4KJGA 3SZYA 5IJQA 5LIAA 1O99A 1ANJA 4UORA 1HDHA 2D1GA 4UPLA 4KAVA 4LRFA 4MY4A 2GSUA 2RH6A 4N7TA 2GA3A 4LRCA 4GTZA 1FSUA 4LR9A 1KH7A 3MK0A 2VQRA 3T02A 1ZEDA 3A52A 3UN2A 5EGHA 5L0EA 5DLTA 5INHA 4MIVA 4FDJA 4ZG7A 2W5VA 1AJCA 1ALJA 2ZKTA 1N2KA 4LQYA 4GTYA 4KAYA 2W8DA 1ED8A 4UOOA 2GLQA 2W5TA 4NWXA 5DLWA 1KHJA 3BDHA 1E33P 1ELYA 5C66A 3WAXA 4UPIA 4B56A 1KHNA 4CYSA 3M7VA 4KM4A 2ANHA 1K7HA 1EW9A 3UN5A 3ED4A 1AJAA 1KH9A 5L0KA 3NKRA 3NKPA 1EI6A 3T01A 1AUKA 4LR7A 3LXQA 2GSOA 3B5QA 3MK1A 4LR2A 1ED9A 3IDDA 3UNYA 1ALKA
chains in the Genus database with same CATH topology
1KH5A 2XRGA 4KJDA 4LRAA 4LR8A 4GTXA 2W5QA 4TN0A 3M8YA 1KHLA 5AJ9A 4FDIA 1ELZA 3IGYB 5KXAA 3UN3A 4LRBA 1HQAA 1EW2A 3WAYA 3M8ZA 3WAVA 1ALHA 1EJJA 2X98A 2IUCB 4LRDA 4ZG6A 5HRTA 2W5RA 4UOPA 1P49A 2W5SA 1ELXA 4ZGAA 4QAXA 5EGEA 5IJSA 3NKOA 1E3CP 4LREA 5GOVA 4YR1A 5L0BA 3MK2A 3NKMA 2IUCA 3IGZB 1EW8A 3UO0A 1B8JA 4ZG9A 5K4PA 4CXKA 3TX0A 2GSNA 4UPKA 5LQQA 2IFYA 1ZEBA 3E2DA 1ZEFA 2XR9A 3WBHA 5LRNA 1Y7AA 1E2SP 1ALIA 1O98A 1N2LA 1URAA 1SHQA 2W5WA 3OT9A 4CXUA 5GRRA 1URBA 1AJBA 1E1ZP 3SZZA 3NVLA 4UPHA 3TWZA 3BDFA 3WAWA 1Y6VA 3BDGA 3CMRA 4CYRA 1EQJA 1KHKA 1SHNA 2W8SA 1KH4A 3KD8A 3NKNA 3M8WA 5LRMA 1HJKA 5DLVA 2W5XA 3T00A 2G9YA 3TG0A 1AJDA 5TJ3A 3DPCA 3Q3QA 4MHXA 3NKQA 3BDGB 3DYCA 2QZUA 4CXSA 4NWJA 1ANIA 4GTWA 4KJGA 3SZYA 5IJQA 5LIAA 1O99A 1ANJA 4UORA 1HDHA 2D1GA 4UPLA 4KAVA 4LRFA 4MY4A 2GSUA 2RH6A 4N7TA 2GA3A 4LRCA 4GTZA 1FSUA 4LR9A 1KH7A 3MK0A 2VQRA 3T02A 1ZEDA 3A52A 3UN2A 5EGHA 5L0EA 5DLTA 5INHA 4MIVA 4FDJA 4ZG7A 2W5VA 1AJCA 1ALJA 2ZKTA 1N2KA 4LQYA 4GTYA 4KAYA 2W8DA 1ED8A 4UOOA 2GLQA 2W5TA 4NWXA 5DLWA 1KHJA 3BDHA 1E33P 1ELYA 5C66A 3WAXA 4UPIA 4B56A 1KHNA 4CYSA 3M7VA 4KM4A 2ANHA 1K7HA 1EW9A 3UN5A 3ED4A 1AJAA 1KH9A 5L0KA 3NKRA 3NKPA 1EI6A 3T01A 1AUKA 4LR7A 3LXQA 2GSOA 3B5QA 3MK1A 4LR2A 1ED9A 3IDDA 3UNYA 1ALKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KH5 A;  2XRG A;  4KJD A;  4LRA A;  4LR8 A;  4GTX A;  2W5Q A;  4TN0 A;  3M8Y A;  1KHL A;  5AJ9 A;  4FDI A;  1ELZ A;  3IGY B;  5KXA A;  3UN3 A;  4LRB A;  1HQA A;  1EW2 A;  3WAY A;  3M8Z A;  3WAV A;  1ALH A;  1EJJ A;  2X98 A;  2IUC B;  4LRD A;  4ZG6 A;  5HRT A;  2W5R A;  4UOP A;  1P49 A;  2W5S A;  1ELX A;  4ZGA A;  4QAX A;  5EGE A;  5IJS A;  3NKO A;  1E3C P;  4LRE A;  5GOV A;  4YR1 A;  5L0B A;  3MK2 A;  3NKM A;  2IUC A;  3IGZ B;  1EW8 A;  3UO0 A;  1B8J A;  4ZG9 A;  5K4P A;  4CXK A;  3TX0 A;  2GSN A;  4UPK A;  5LQQ A;  2IFY A;  1ZEB A;  3E2D A;  1ZEF A;  2XR9 A;  3WBH A;  5LRN A;  1Y7A A;  1E2S P;  1ALI A;  1O98 A;  1N2L A;  1URA A;  1SHQ A;  2W5W A;  3OT9 A;  4CXU A;  5GRR A;  1URB A;  1AJB A;  1E1Z P;  3SZZ A;  3NVL A;  4UPH A;  3TWZ A;  3BDF A;  3WAW A;  1Y6V A;  3BDG A;  3CMR A;  4CYR A;  1EQJ A;  1KHK A;  1SHN A;  2W8S A;  1KH4 A;  3KD8 A;  3NKN A;  3M8W A;  5LRM A;  1HJK A;  5DLV A;  2W5X A;  3T00 A;  2G9Y A;  3TG0 A;  1AJD A;  5TJ3 A;  3DPC A;  3Q3Q A;  4MHX A;  3NKQ A;  3BDG B;  3DYC A;  2QZU A;  4CXS A;  4NWJ A;  1ANI A;  4GTW A;  4KJG A;  3SZY A;  5IJQ A;  5LIA A;  1O99 A;  1ANJ A;  4UOR A;  1HDH A;  2D1G A;  4UPL A;  4KAV A;  4LRF A;  4MY4 A;  2GSU A;  2RH6 A;  4N7T A;  2GA3 A;  4LRC A;  4GTZ A;  1FSU A;  4LR9 A;  1KH7 A;  3MK0 A;  2VQR A;  3T02 A;  1ZED A;  3A52 A;  3UN2 A;  5EGH A;  5L0E A;  5DLT A;  5INH A;  4MIV A;  4FDJ A;  4ZG7 A;  2W5V A;  1AJC A;  1ALJ A;  2ZKT A;  1N2K A;  4LQY A;  4GTY A;  4KAY A;  2W8D A;  1ED8 A;  4UOO A;  2GLQ A;  2W5T A;  4NWX A;  5DLW A;  1KHJ A;  3BDH A;  1E33 P;  1ELY A;  5C66 A;  3WAX A;  4UPI A;  4B56 A;  1KHN A;  4CYS A;  3M7V A;  4KM4 A;  2ANH A;  1K7H A;  1EW9 A;  3UN5 A;  3ED4 A;  1AJA A;  1KH9 A;  5L0K A;  3NKR A;  3NKP A;  1EI6 A;  3T01 A;  1AUK A;  4LR7 A;  3LXQ A;  2GSO A;  3B5Q A;  3MK1 A;  4LR2 A;  1ED9 A;  3IDD A;  3UNY A;  1ALK A; 
#chains in the Genus database with same CATH topology
 1KH5 A;  2XRG A;  4KJD A;  4LRA A;  4LR8 A;  4GTX A;  2W5Q A;  4TN0 A;  3M8Y A;  1KHL A;  5AJ9 A;  4FDI A;  1ELZ A;  3IGY B;  5KXA A;  3UN3 A;  4LRB A;  1HQA A;  1EW2 A;  3WAY A;  3M8Z A;  3WAV A;  1ALH A;  1EJJ A;  2X98 A;  2IUC B;  4LRD A;  4ZG6 A;  5HRT A;  2W5R A;  4UOP A;  1P49 A;  2W5S A;  1ELX A;  4ZGA A;  4QAX A;  5EGE A;  5IJS A;  3NKO A;  1E3C P;  4LRE A;  5GOV A;  4YR1 A;  5L0B A;  3MK2 A;  3NKM A;  2IUC A;  3IGZ B;  1EW8 A;  3UO0 A;  1B8J A;  4ZG9 A;  5K4P A;  4CXK A;  3TX0 A;  2GSN A;  4UPK A;  5LQQ A;  2IFY A;  1ZEB A;  3E2D A;  1ZEF A;  2XR9 A;  3WBH A;  5LRN A;  1Y7A A;  1E2S P;  1ALI A;  1O98 A;  1N2L A;  1URA A;  1SHQ A;  2W5W A;  3OT9 A;  4CXU A;  5GRR A;  1URB A;  1AJB A;  1E1Z P;  3SZZ A;  3NVL A;  4UPH A;  3TWZ A;  3BDF A;  3WAW A;  1Y6V A;  3BDG A;  3CMR A;  4CYR A;  1EQJ A;  1KHK A;  1SHN A;  2W8S A;  1KH4 A;  3KD8 A;  3NKN A;  3M8W A;  5LRM A;  1HJK A;  5DLV A;  2W5X A;  3T00 A;  2G9Y A;  3TG0 A;  1AJD A;  5TJ3 A;  3DPC A;  3Q3Q A;  4MHX A;  3NKQ A;  3BDG B;  3DYC A;  2QZU A;  4CXS A;  4NWJ A;  1ANI A;  4GTW A;  4KJG A;  3SZY A;  5IJQ A;  5LIA A;  1O99 A;  1ANJ A;  4UOR A;  1HDH A;  2D1G A;  4UPL A;  4KAV A;  4LRF A;  4MY4 A;  2GSU A;  2RH6 A;  4N7T A;  2GA3 A;  4LRC A;  4GTZ A;  1FSU A;  4LR9 A;  1KH7 A;  3MK0 A;  2VQR A;  3T02 A;  1ZED A;  3A52 A;  3UN2 A;  5EGH A;  5L0E A;  5DLT A;  5INH A;  4MIV A;  4FDJ A;  4ZG7 A;  2W5V A;  1AJC A;  1ALJ A;  2ZKT A;  1N2K A;  4LQY A;  4GTY A;  4KAY A;  2W8D A;  1ED8 A;  4UOO A;  2GLQ A;  2W5T A;  4NWX A;  5DLW A;  1KHJ A;  3BDH A;  1E33 P;  1ELY A;  5C66 A;  3WAX A;  4UPI A;  4B56 A;  1KHN A;  4CYS A;  3M7V A;  4KM4 A;  2ANH A;  1K7H A;  1EW9 A;  3UN5 A;  3ED4 A;  1AJA A;  1KH9 A;  5L0K A;  3NKR A;  3NKP A;  1EI6 A;  3T01 A;  1AUK A;  4LR7 A;  3LXQ A;  2GSO A;  3B5Q A;  3MK1 A;  4LR2 A;  1ED9 A;  3IDD A;  3UNY A;  1ALK A; 
#chains in the Genus database with same CATH homology
 1KH5 A;  2XRG A;  4KJD A;  4LRA A;  4LR8 A;  4GTX A;  2W5Q A;  4TN0 A;  3M8Y A;  1KHL A;  5AJ9 A;  4FDI A;  1ELZ A;  3IGY B;  5KXA A;  3UN3 A;  4LRB A;  1HQA A;  1EW2 A;  3WAY A;  3M8Z A;  3WAV A;  1ALH A;  1EJJ A;  2X98 A;  2IUC B;  4LRD A;  4ZG6 A;  5HRT A;  2W5R A;  4UOP A;  1P49 A;  2W5S A;  1ELX A;  4ZGA A;  4QAX A;  5EGE A;  5IJS A;  3NKO A;  1E3C P;  4LRE A;  5GOV A;  4YR1 A;  5L0B A;  3MK2 A;  3NKM A;  2IUC A;  3IGZ B;  1EW8 A;  3UO0 A;  1B8J A;  4ZG9 A;  5K4P A;  4CXK A;  3TX0 A;  2GSN A;  4UPK A;  5LQQ A;  2IFY A;  1ZEB A;  3E2D A;  1ZEF A;  2XR9 A;  3WBH A;  5LRN A;  1Y7A A;  1E2S P;  1ALI A;  1O98 A;  1N2L A;  1URA A;  1SHQ A;  2W5W A;  3OT9 A;  4CXU A;  5GRR A;  1URB A;  1AJB A;  1E1Z P;  3SZZ A;  3NVL A;  4UPH A;  3TWZ A;  3BDF A;  3WAW A;  1Y6V A;  3BDG A;  3CMR A;  4CYR A;  1EQJ A;  1KHK A;  1SHN A;  2W8S A;  1KH4 A;  3KD8 A;  3NKN A;  3M8W A;  5LRM A;  1HJK A;  5DLV A;  2W5X A;  3T00 A;  2G9Y A;  3TG0 A;  1AJD A;  5TJ3 A;  3DPC A;  3Q3Q A;  4MHX A;  3NKQ A;  3BDG B;  3DYC A;  2QZU A;  4CXS A;  4NWJ A;  1ANI A;  4GTW A;  4KJG A;  3SZY A;  5IJQ A;  5LIA A;  1O99 A;  1ANJ A;  4UOR A;  1HDH A;  2D1G A;  4UPL A;  4KAV A;  4LRF A;  4MY4 A;  2GSU A;  2RH6 A;  4N7T A;  2GA3 A;  4LRC A;  4GTZ A;  1FSU A;  4LR9 A;  1KH7 A;  3MK0 A;  2VQR A;  3T02 A;  1ZED A;  3A52 A;  3UN2 A;  5EGH A;  5L0E A;  5DLT A;  5INH A;  4MIV A;  4FDJ A;  4ZG7 A;  2W5V A;  1AJC A;  1ALJ A;  2ZKT A;  1N2K A;  4LQY A;  4GTY A;  4KAY A;  2W8D A;  1ED8 A;  4UOO A;  2GLQ A;  2W5T A;  4NWX A;  5DLW A;  1KHJ A;  3BDH A;  1E33 P;  1ELY A;  5C66 A;  3WAX A;  4UPI A;  4B56 A;  1KHN A;  4CYS A;  3M7V A;  4KM4 A;  2ANH A;  1K7H A;  1EW9 A;  3UN5 A;  3ED4 A;  1AJA A;  1KH9 A;  5L0K A;  3NKR A;  3NKP A;  1EI6 A;  3T01 A;  1AUK A;  4LR7 A;  3LXQ A;  2GSO A;  3B5Q A;  3MK1 A;  4LR2 A;  1ED9 A;  3IDD A;  3UNY A;  1ALK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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