4QAXA

Crystal structure of post-catalytic binary complex of phosphoglycerate mutase from staphylococcus aureus
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
Knots found
sequence length
503
structure length
503
Chain Sequence
KKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title STRUCTURAL AND FUNCCTIONAL ANALYSIS of PHOSPHOGLYCERATE MUTASE from STAPHYLOCOCCUS AUREUS
rcsb
source organism Staphylococcus aureus subsp. aureus
molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
total genus 185
structure length 503
sequence length 503
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2014-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4qaxA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4qaxA02
2QZUA 1ZEFA 4ZG9A 1ELZA 1E33P 1ED9A 4LR7A 1ALHA 3NKMA 1O98A 3Q3QA 2VQRA 1KHKA 4UPKA 3IGYB 4UOOA 3CMRA 4LR8A 3DYCA 2W8SA 3SZYA 4LRBA 4GTYA 3DPCA 3UN3A 1AJBA 2W5RA 5KXAA 5LRMA 3UN5A 5L0EA 4UORA 3A52A 1KH9A 2IFYA 1ALIA 4UPHA 3M8YA 1EJJA 3BDHA 4CYSA 1AJDA 4KJDA 5LQQA 4LRDA 3WAWA 2W5XA 1HJKA 2IUCB 4CYRA 4KJGA 4UPIA 5TJ3A 4GTWA 1URAA 1ALKA 1Y6VA 3E2DA 3NKPA 3OT9A 3WAVA 4CXUA 3MK0A 1E3CP 1E1ZP 2GSOA 1KHJA 2W5SA 3IDDA 4TN0A 1ED8A 2RH6A 1KH7A 2G9YA 1N2LA 3T02A 1URBA 2XRGA 3LXQA 1P49A 3BDGB 1ZEDA 3KD8A 3NKQA 3TG0A 4LQYA 3IGZB 4N7TA 5GRRA 1N2KA 1ANJA 2X98A 4YR1A 5EGHA 4LR2A 5GOVA 5LIAA 4LRCA 5K4PA 1SHQA 3UO0A 1KHLA 1KH5A 4GTZA 1Y7AA 1HDHA 1ELXA 2W5WA 3T00A 4FDJA 4UPLA 3M7VA 2W5TA 3NVLA 2D1GA 1FSUA 1ELYA 1AJCA 3TWZA 4KM4A 1EQJA 1HQAA 1EW2A 3MK1A 5AJ9A 3NKOA 3BDGA 5IJQA 4KAYA 4ZGAA 1ANIA 1EW9A 3M8WA 1B8JA 2ZKTA 1EI6A 5C66A 4KAVA 4MHXA 4CXSA 1EW8A 1SHNA 2IUCA 5EGEA 5L0BA 3NKNA 1ALJA 1AUKA 5DLWA 1O99A 4UOPA 1ZEBA 4LRAA 4ZG7A 1KH4A 4LRFA 3UN2A 3WAXA 5LRNA 4LR9A 4MY4A 3ED4A 2GA3A 3B5QA 2GSUA 4MIVA 2GLQA 3MK2A 3UNYA 3WBHA 2ANHA 3T01A 3SZZA 4B56A 2W5VA 2XR9A 5DLTA 1AJAA 3BDFA 4GTXA 4NWJA 5L0KA 2GSNA 4ZG6A 5INHA 3NKRA 4CXKA 4FDIA 5HRTA 1E2SP 2W8DA 5IJSA 3WAYA 3TX0A 2W5QA 5DLVA 4QAXA 1K7HA 1KHNA 4LREA 4NWXA 3M8ZA
chains in the Genus database with same CATH superfamily
2QZUA 1ZEFA 4ZG9A 1ELZA 1E33P 1ED9A 4LR7A 1ALHA 3NKMA 1O98A 3Q3QA 2VQRA 1KHKA 4UPKA 3IGYB 4UOOA 3CMRA 4LR8A 3DYCA 2W8SA 3SZYA 4LRBA 4GTYA 3DPCA 3UN3A 1AJBA 2W5RA 5KXAA 5LRMA 3UN5A 5L0EA 4UORA 3A52A 1KH9A 2IFYA 1ALIA 4UPHA 3M8YA 1EJJA 3BDHA 4CYSA 1AJDA 4KJDA 5LQQA 4LRDA 3WAWA 2W5XA 1HJKA 2IUCB 4CYRA 4KJGA 4UPIA 5TJ3A 4GTWA 1URAA 1ALKA 1Y6VA 3E2DA 3NKPA 3OT9A 3WAVA 4CXUA 3MK0A 1E3CP 1E1ZP 2GSOA 1KHJA 2W5SA 3IDDA 4TN0A 1ED8A 2RH6A 1KH7A 2G9YA 1N2LA 3T02A 1URBA 2XRGA 3LXQA 1P49A 3BDGB 1ZEDA 3KD8A 3NKQA 3TG0A 4LQYA 3IGZB 4N7TA 5GRRA 1N2KA 1ANJA 2X98A 4YR1A 5EGHA 4LR2A 5GOVA 5LIAA 4LRCA 5K4PA 1SHQA 3UO0A 1KHLA 1KH5A 4GTZA 1Y7AA 1HDHA 1ELXA 2W5WA 3T00A 4FDJA 4UPLA 3M7VA 2W5TA 3NVLA 2D1GA 1FSUA 1ELYA 1AJCA 3TWZA 4KM4A 1EQJA 1HQAA 1EW2A 3MK1A 5AJ9A 3NKOA 3BDGA 5IJQA 4KAYA 4ZGAA 1ANIA 1EW9A 3M8WA 1B8JA 2ZKTA 1EI6A 5C66A 4KAVA 4MHXA 4CXSA 1EW8A 1SHNA 2IUCA 5EGEA 5L0BA 3NKNA 1ALJA 1AUKA 5DLWA 1O99A 4UOPA 1ZEBA 4LRAA 4ZG7A 1KH4A 4LRFA 3UN2A 3WAXA 5LRNA 4LR9A 4MY4A 3ED4A 2GA3A 3B5QA 2GSUA 4MIVA 2GLQA 3MK2A 3UNYA 3WBHA 2ANHA 3T01A 3SZZA 4B56A 2W5VA 2XR9A 5DLTA 1AJAA 3BDFA 4GTXA 4NWJA 5L0KA 2GSNA 4ZG6A 5INHA 3NKRA 4CXKA 4FDIA 5HRTA 1E2SP 2W8DA 5IJSA 3WAYA 3TX0A 2W5QA 5DLVA 4QAXA 1K7HA 1KHNA 4LREA 4NWXA 3M8ZA
chains in the Genus database with same CATH topology
2QZUA 1ZEFA 4ZG9A 1ELZA 1E33P 1ED9A 4LR7A 1ALHA 3NKMA 1O98A 3Q3QA 2VQRA 1KHKA 4UPKA 3IGYB 4UOOA 3CMRA 4LR8A 3DYCA 2W8SA 3SZYA 4LRBA 4GTYA 3DPCA 3UN3A 1AJBA 2W5RA 5KXAA 5LRMA 3UN5A 5L0EA 4UORA 3A52A 1KH9A 2IFYA 1ALIA 4UPHA 3M8YA 1EJJA 3BDHA 4CYSA 1AJDA 4KJDA 5LQQA 4LRDA 3WAWA 2W5XA 1HJKA 2IUCB 4CYRA 4KJGA 4UPIA 5TJ3A 4GTWA 1URAA 1ALKA 1Y6VA 3E2DA 3NKPA 3OT9A 3WAVA 4CXUA 3MK0A 1E3CP 1E1ZP 2GSOA 1KHJA 2W5SA 3IDDA 4TN0A 1ED8A 2RH6A 1KH7A 2G9YA 1N2LA 3T02A 1URBA 2XRGA 3LXQA 1P49A 3BDGB 1ZEDA 3KD8A 3NKQA 3TG0A 4LQYA 3IGZB 4N7TA 5GRRA 1N2KA 1ANJA 2X98A 4YR1A 5EGHA 4LR2A 5GOVA 5LIAA 4LRCA 5K4PA 1SHQA 3UO0A 1KHLA 1KH5A 4GTZA 1Y7AA 1HDHA 1ELXA 2W5WA 3T00A 4FDJA 4UPLA 3M7VA 2W5TA 3NVLA 2D1GA 1FSUA 1ELYA 1AJCA 3TWZA 4KM4A 1EQJA 1HQAA 1EW2A 3MK1A 5AJ9A 3NKOA 3BDGA 5IJQA 4KAYA 4ZGAA 1ANIA 1EW9A 3M8WA 1B8JA 2ZKTA 1EI6A 5C66A 4KAVA 4MHXA 4CXSA 1EW8A 1SHNA 2IUCA 5EGEA 5L0BA 3NKNA 1ALJA 1AUKA 5DLWA 1O99A 4UOPA 1ZEBA 4LRAA 4ZG7A 1KH4A 4LRFA 3UN2A 3WAXA 5LRNA 4LR9A 4MY4A 3ED4A 2GA3A 3B5QA 2GSUA 4MIVA 2GLQA 3MK2A 3UNYA 3WBHA 2ANHA 3T01A 3SZZA 4B56A 2W5VA 2XR9A 5DLTA 1AJAA 3BDFA 4GTXA 4NWJA 5L0KA 2GSNA 4ZG6A 5INHA 3NKRA 4CXKA 4FDIA 5HRTA 1E2SP 2W8DA 5IJSA 3WAYA 3TX0A 2W5QA 5DLVA 4QAXA 1K7HA 1KHNA 4LREA 4NWXA 3M8ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QZU A;  1ZEF A;  4ZG9 A;  1ELZ A;  1E33 P;  1ED9 A;  4LR7 A;  1ALH A;  3NKM A;  1O98 A;  3Q3Q A;  2VQR A;  1KHK A;  4UPK A;  3IGY B;  4UOO A;  3CMR A;  4LR8 A;  3DYC A;  2W8S A;  3SZY A;  4LRB A;  4GTY A;  3DPC A;  3UN3 A;  1AJB A;  2W5R A;  5KXA A;  5LRM A;  3UN5 A;  5L0E A;  4UOR A;  3A52 A;  1KH9 A;  2IFY A;  1ALI A;  4UPH A;  3M8Y A;  1EJJ A;  3BDH A;  4CYS A;  1AJD A;  4KJD A;  5LQQ A;  4LRD A;  3WAW A;  2W5X A;  1HJK A;  2IUC B;  4CYR A;  4KJG A;  4UPI A;  5TJ3 A;  4GTW A;  1URA A;  1ALK A;  1Y6V A;  3E2D A;  3NKP A;  3OT9 A;  3WAV A;  4CXU A;  3MK0 A;  1E3C P;  1E1Z P;  2GSO A;  1KHJ A;  2W5S A;  3IDD A;  4TN0 A;  1ED8 A;  2RH6 A;  1KH7 A;  2G9Y A;  1N2L A;  3T02 A;  1URB A;  2XRG A;  3LXQ A;  1P49 A;  3BDG B;  1ZED A;  3KD8 A;  3NKQ A;  3TG0 A;  4LQY A;  3IGZ B;  4N7T A;  5GRR A;  1N2K A;  1ANJ A;  2X98 A;  4YR1 A;  5EGH A;  4LR2 A;  5GOV A;  5LIA A;  4LRC A;  5K4P A;  1SHQ A;  3UO0 A;  1KHL A;  1KH5 A;  4GTZ A;  1Y7A A;  1HDH A;  1ELX A;  2W5W A;  3T00 A;  4FDJ A;  4UPL A;  3M7V A;  2W5T A;  3NVL A;  2D1G A;  1FSU A;  1ELY A;  1AJC A;  3TWZ A;  4KM4 A;  1EQJ A;  1HQA A;  1EW2 A;  3MK1 A;  5AJ9 A;  3NKO A;  3BDG A;  5IJQ A;  4KAY A;  4ZGA A;  1ANI A;  1EW9 A;  3M8W A;  1B8J A;  2ZKT A;  1EI6 A;  5C66 A;  4KAV A;  4MHX A;  4CXS A;  1EW8 A;  1SHN A;  2IUC A;  5EGE A;  5L0B A;  3NKN A;  1ALJ A;  1AUK A;  5DLW A;  1O99 A;  4UOP A;  1ZEB A;  4LRA A;  4ZG7 A;  1KH4 A;  4LRF A;  3UN2 A;  3WAX A;  5LRN A;  4LR9 A;  4MY4 A;  3ED4 A;  2GA3 A;  3B5Q A;  2GSU A;  4MIV A;  2GLQ A;  3MK2 A;  3UNY A;  3WBH A;  2ANH A;  3T01 A;  3SZZ A;  4B56 A;  2W5V A;  2XR9 A;  5DLT A;  1AJA A;  3BDF A;  4GTX A;  4NWJ A;  5L0K A;  2GSN A;  4ZG6 A;  5INH A;  3NKR A;  4CXK A;  4FDI A;  5HRT A;  1E2S P;  2W8D A;  5IJS A;  3WAY A;  3TX0 A;  2W5Q A;  5DLV A;  4QAX A;  1K7H A;  1KHN A;  4LRE A;  4NWX A;  3M8Z A; 
#chains in the Genus database with same CATH topology
 2QZU A;  1ZEF A;  4ZG9 A;  1ELZ A;  1E33 P;  1ED9 A;  4LR7 A;  1ALH A;  3NKM A;  1O98 A;  3Q3Q A;  2VQR A;  1KHK A;  4UPK A;  3IGY B;  4UOO A;  3CMR A;  4LR8 A;  3DYC A;  2W8S A;  3SZY A;  4LRB A;  4GTY A;  3DPC A;  3UN3 A;  1AJB A;  2W5R A;  5KXA A;  5LRM A;  3UN5 A;  5L0E A;  4UOR A;  3A52 A;  1KH9 A;  2IFY A;  1ALI A;  4UPH A;  3M8Y A;  1EJJ A;  3BDH A;  4CYS A;  1AJD A;  4KJD A;  5LQQ A;  4LRD A;  3WAW A;  2W5X A;  1HJK A;  2IUC B;  4CYR A;  4KJG A;  4UPI A;  5TJ3 A;  4GTW A;  1URA A;  1ALK A;  1Y6V A;  3E2D A;  3NKP A;  3OT9 A;  3WAV A;  4CXU A;  3MK0 A;  1E3C P;  1E1Z P;  2GSO A;  1KHJ A;  2W5S A;  3IDD A;  4TN0 A;  1ED8 A;  2RH6 A;  1KH7 A;  2G9Y A;  1N2L A;  3T02 A;  1URB A;  2XRG A;  3LXQ A;  1P49 A;  3BDG B;  1ZED A;  3KD8 A;  3NKQ A;  3TG0 A;  4LQY A;  3IGZ B;  4N7T A;  5GRR A;  1N2K A;  1ANJ A;  2X98 A;  4YR1 A;  5EGH A;  4LR2 A;  5GOV A;  5LIA A;  4LRC A;  5K4P A;  1SHQ A;  3UO0 A;  1KHL A;  1KH5 A;  4GTZ A;  1Y7A A;  1HDH A;  1ELX A;  2W5W A;  3T00 A;  4FDJ A;  4UPL A;  3M7V A;  2W5T A;  3NVL A;  2D1G A;  1FSU A;  1ELY A;  1AJC A;  3TWZ A;  4KM4 A;  1EQJ A;  1HQA A;  1EW2 A;  3MK1 A;  5AJ9 A;  3NKO A;  3BDG A;  5IJQ A;  4KAY A;  4ZGA A;  1ANI A;  1EW9 A;  3M8W A;  1B8J A;  2ZKT A;  1EI6 A;  5C66 A;  4KAV A;  4MHX A;  4CXS A;  1EW8 A;  1SHN A;  2IUC A;  5EGE A;  5L0B A;  3NKN A;  1ALJ A;  1AUK A;  5DLW A;  1O99 A;  4UOP A;  1ZEB A;  4LRA A;  4ZG7 A;  1KH4 A;  4LRF A;  3UN2 A;  3WAX A;  5LRN A;  4LR9 A;  4MY4 A;  3ED4 A;  2GA3 A;  3B5Q A;  2GSU A;  4MIV A;  2GLQ A;  3MK2 A;  3UNY A;  3WBH A;  2ANH A;  3T01 A;  3SZZ A;  4B56 A;  2W5V A;  2XR9 A;  5DLT A;  1AJA A;  3BDF A;  4GTX A;  4NWJ A;  5L0K A;  2GSN A;  4ZG6 A;  5INH A;  3NKR A;  4CXK A;  4FDI A;  5HRT A;  1E2S P;  2W8D A;  5IJS A;  3WAY A;  3TX0 A;  2W5Q A;  5DLV A;  4QAX A;  1K7H A;  1KHN A;  4LRE A;  4NWX A;  3M8Z A; 
#chains in the Genus database with same CATH homology
 2QZU A;  1ZEF A;  4ZG9 A;  1ELZ A;  1E33 P;  1ED9 A;  4LR7 A;  1ALH A;  3NKM A;  1O98 A;  3Q3Q A;  2VQR A;  1KHK A;  4UPK A;  3IGY B;  4UOO A;  3CMR A;  4LR8 A;  3DYC A;  2W8S A;  3SZY A;  4LRB A;  4GTY A;  3DPC A;  3UN3 A;  1AJB A;  2W5R A;  5KXA A;  5LRM A;  3UN5 A;  5L0E A;  4UOR A;  3A52 A;  1KH9 A;  2IFY A;  1ALI A;  4UPH A;  3M8Y A;  1EJJ A;  3BDH A;  4CYS A;  1AJD A;  4KJD A;  5LQQ A;  4LRD A;  3WAW A;  2W5X A;  1HJK A;  2IUC B;  4CYR A;  4KJG A;  4UPI A;  5TJ3 A;  4GTW A;  1URA A;  1ALK A;  1Y6V A;  3E2D A;  3NKP A;  3OT9 A;  3WAV A;  4CXU A;  3MK0 A;  1E3C P;  1E1Z P;  2GSO A;  1KHJ A;  2W5S A;  3IDD A;  4TN0 A;  1ED8 A;  2RH6 A;  1KH7 A;  2G9Y A;  1N2L A;  3T02 A;  1URB A;  2XRG A;  3LXQ A;  1P49 A;  3BDG B;  1ZED A;  3KD8 A;  3NKQ A;  3TG0 A;  4LQY A;  3IGZ B;  4N7T A;  5GRR A;  1N2K A;  1ANJ A;  2X98 A;  4YR1 A;  5EGH A;  4LR2 A;  5GOV A;  5LIA A;  4LRC A;  5K4P A;  1SHQ A;  3UO0 A;  1KHL A;  1KH5 A;  4GTZ A;  1Y7A A;  1HDH A;  1ELX A;  2W5W A;  3T00 A;  4FDJ A;  4UPL A;  3M7V A;  2W5T A;  3NVL A;  2D1G A;  1FSU A;  1ELY A;  1AJC A;  3TWZ A;  4KM4 A;  1EQJ A;  1HQA A;  1EW2 A;  3MK1 A;  5AJ9 A;  3NKO A;  3BDG A;  5IJQ A;  4KAY A;  4ZGA A;  1ANI A;  1EW9 A;  3M8W A;  1B8J A;  2ZKT A;  1EI6 A;  5C66 A;  4KAV A;  4MHX A;  4CXS A;  1EW8 A;  1SHN A;  2IUC A;  5EGE A;  5L0B A;  3NKN A;  1ALJ A;  1AUK A;  5DLW A;  1O99 A;  4UOP A;  1ZEB A;  4LRA A;  4ZG7 A;  1KH4 A;  4LRF A;  3UN2 A;  3WAX A;  5LRN A;  4LR9 A;  4MY4 A;  3ED4 A;  2GA3 A;  3B5Q A;  2GSU A;  4MIV A;  2GLQ A;  3MK2 A;  3UNY A;  3WBH A;  2ANH A;  3T01 A;  3SZZ A;  4B56 A;  2W5V A;  2XR9 A;  5DLT A;  1AJA A;  3BDF A;  4GTX A;  4NWJ A;  5L0K A;  2GSN A;  4ZG6 A;  5INH A;  3NKR A;  4CXK A;  4FDI A;  5HRT A;  1E2S P;  2W8D A;  5IJS A;  3WAY A;  3TX0 A;  2W5Q A;  5DLV A;  4QAX A;  1K7H A;  1KHN A;  4LRE A;  4NWX A;  3M8Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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