4QBNA

Vrr_nuc domain
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
93
structure length
93
Chain Sequence
ATKEGRVQKYAKERFEALGGLVRKLSYEGRSGAPDLLVILPRGVIWFVEVKKDENTKPDPHQLREHERFRKRGANVFVVGSFKQVDKLIEHYY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title FAN1 activity on asymmetric repair intermediates is mediated by an atypical monomeric virus-type replication-repair nuclease domain.
pubmed doi rcsb
molecule tags Hydrolase
source organism Salmonella phage setp3
molecule keywords Nuclease
total genus 29
structure length 93
sequence length 93
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08774 VRR_NUC VRR-NUC domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 4qbnA00
2WJ0A 2CV8A 4TKDA 1OB9A 1R0VA 2WCZA 2ZYZB 3P1ZB 2WIZA 1IPIA 4QBNA 2OSTA 3P1ZA 1RZNA 2ZYZA 1Y1OA 1HH1A 3P1YA 2FCOA 5FDKA 2INBA 3IEYA 1ZP7A 1Y88A 2GJWA 1RLVA 4QBOA 1A79A 1R11A 1F1ZA 1OB8A 3FOVA 2OKFA 1XMXA 2VLDA 3AJVB 1GEFA 2WCWA 3DNXA 2EO0A 2GW6A 3AJVA 4QBLA 1T0FA 2WIWA 4TKKA
chains in the Genus database with same CATH superfamily
2WJ0A 2CV8A 4TKDA 2FKCA 1OB9A 1YNMA 1R0VA 2WCZA 2ZYZB 3P1ZB 4G6UA 2WIZA 2W8MA 1IPIA 4QBNA 2FL3A 3BT7A 2OSTA 4LQEA 4DA2A 3P1ZA 4DAPA 1RZNA 2ZYZA 1Y1OA 3IEYB 1HH1A 3P1YA 2FCOA 5FDKA 1UWVA 3IF0X 2INBA 4EV1A 2JJQA 3IEYA 1ZP7A 1Y88A 4DAVA 1RLVA 2GJWA 4QBOA 1A79A 1R11A 2BH2A 1F1ZA 1OB8A 3FOVA 2FLCA 2OKFA 1XMXA 2VLDA 3AJVB 4G6VA 4ZQUA 2VS1A 2CZRA 1GEFA 2WCWA 2IXSA 2EO0A 2GW6A 3DNXA 2Z0RA 4E6ZA 3AJVA 4QBLA 2FKHB 2DBSA 1T0FA 2WIWA 4TKKA
chains in the Genus database with same CATH topology
2WJ0A 2CV8A 4TKDA 2FKCA 1OB9A 1YNMA 1R0VA 2WCZA 2ZYZB 3P1ZB 4G6UA 2WIZA 2W8MA 1IPIA 4QBNA 2FL3A 3BT7A 2OSTA 4LQEA 4DA2A 3P1ZA 4DAPA 1RZNA 2ZYZA 1Y1OA 3IEYB 1HH1A 3P1YA 2FCOA 5FDKA 1UWVA 3IF0X 2INBA 4EV1A 2JJQA 3IEYA 1ZP7A 1Y88A 4DAVA 1RLVA 2GJWA 4QBOA 1A79A 1R11A 2BH2A 1F1ZA 1OB8A 3FOVA 2FLCA 2OKFA 1XMXA 2VLDA 3AJVB 4G6VA 4ZQUA 2VS1A 2CZRA 1GEFA 2WCWA 2IXSA 2EO0A 2GW6A 3DNXA 2Z0RA 4E6ZA 3AJVA 4QBLA 2FKHB 2DBSA 1T0FA 2WIWA 4TKKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WJ0 A;  2CV8 A;  4TKD A;  1OB9 A;  1R0V A;  2WCZ A;  2ZYZ B;  3P1Z B;  2WIZ A;  1IPI A;  4QBN A;  2OST A;  3P1Z A;  1RZN A;  2ZYZ A;  1Y1O A;  1HH1 A;  3P1Y A;  2FCO A;  5FDK A;  2INB A;  3IEY A;  1ZP7 A;  1Y88 A;  2GJW A;  1RLV A;  4QBO A;  1A79 A;  1R11 A;  1F1Z A;  1OB8 A;  3FOV A;  2OKF A;  1XMX A;  2VLD A;  3AJV B;  1GEF A;  2WCW A;  3DNX A;  2EO0 A;  2GW6 A;  3AJV A;  4QBL A;  1T0F A;  2WIW A;  4TKK A; 
#chains in the Genus database with same CATH topology
 2WJ0 A;  2CV8 A;  4TKD A;  2FKC A;  1OB9 A;  1YNM A;  1R0V A;  2WCZ A;  2ZYZ B;  3P1Z B;  4G6U A;  2WIZ A;  2W8M A;  1IPI A;  4QBN A;  2FL3 A;  3BT7 A;  2OST A;  4LQE A;  4DA2 A;  3P1Z A;  4DAP A;  1RZN A;  2ZYZ A;  1Y1O A;  3IEY B;  1HH1 A;  3P1Y A;  2FCO A;  5FDK A;  1UWV A;  3IF0 X;  2INB A;  4EV1 A;  2JJQ A;  3IEY A;  1ZP7 A;  1Y88 A;  4DAV A;  1RLV A;  2GJW A;  4QBO A;  1A79 A;  1R11 A;  2BH2 A;  1F1Z A;  1OB8 A;  3FOV A;  2FLC A;  2OKF A;  1XMX A;  2VLD A;  3AJV B;  4G6V A;  4ZQU A;  2VS1 A;  2CZR A;  1GEF A;  2WCW A;  2IXS A;  2EO0 A;  2GW6 A;  3DNX A;  2Z0R A;  4E6Z A;  3AJV A;  4QBL A;  2FKH B;  2DBS A;  1T0F A;  2WIW A;  4TKK A; 
#chains in the Genus database with same CATH homology
 2WJ0 A;  2CV8 A;  4TKD A;  2FKC A;  1OB9 A;  1YNM A;  1R0V A;  2WCZ A;  2ZYZ B;  3P1Z B;  4G6U A;  2WIZ A;  2W8M A;  1IPI A;  4QBN A;  2FL3 A;  3BT7 A;  2OST A;  4LQE A;  4DA2 A;  3P1Z A;  4DAP A;  1RZN A;  2ZYZ A;  1Y1O A;  3IEY B;  1HH1 A;  3P1Y A;  2FCO A;  5FDK A;  1UWV A;  3IF0 X;  2INB A;  4EV1 A;  2JJQ A;  3IEY A;  1ZP7 A;  1Y88 A;  4DAV A;  1RLV A;  2GJW A;  4QBO A;  1A79 A;  1R11 A;  2BH2 A;  1F1Z A;  1OB8 A;  3FOV A;  2FLC A;  2OKF A;  1XMX A;  2VLD A;  3AJV B;  4G6V A;  4ZQU A;  2VS1 A;  2CZR A;  1GEF A;  2WCW A;  2IXS A;  2EO0 A;  2GW6 A;  3DNX A;  2Z0R A;  4E6Z A;  3AJV A;  4QBL A;  2FKH B;  2DBS A;  1T0F A;  2WIW A;  4TKK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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