4QEYA

Crystal structure of a duf4425 family protein (bacova_05332) from bacteroides ovatus atcc 8483 at 2.52 a resolution
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
125
structure length
125
Chain Sequence
NTTGVHKIVVEQSGNTDDFDLNIAFGAANTGGVAKLYNENGEYLGDSYLVNKVTENKISCQTGKEGSMMTCAGSVISTSEQAGKKLKISVIAYIDNKEVNRLEKEYITKGSTLVENFSVSTTSVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein
publication title Crystal structure of a hypothetical protein (BACOVA_05332) from Bacteroides ovatus ATCC 8483 at 2.52 A resolution
rcsb
source organism Bacteroides ovatus
total genus 18
structure length 125
sequence length 125
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2014-05-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.60.60 Mainly Beta Sandwich Lipoxygenase-1 Lipoxygenase-1 4qeyA00
3U6GA 2LRGA 4QEYA
chains in the Genus database with same CATH superfamily
1OLPA 1RRHA 2IUJA 2LGEA 2KXVA 4WHAA 2WXTA 1QMDA 1W52X 4WFOA 2PVSA 2XHHA 4NREA 2WY6A 3V98A 1NO3A 1HPLA 1N8QA 1FGTA 1RP1A 1FGOA 1GYGA 3CWZB 3PZWA 1YGEA 2LRGA 1ETHA 2SBLA 1FGRA 3FG4A 4QWTA 1LPBB 1BU8A 3VF1A 1N8SA 2QZ7A 2XHJA 3BNDA 1HU9A 1CA1A 2KXTA 2QNGA 2FNQA 2WXUA 3O8YA 1RRLA 1Y4KA 1LPAB 2XFEA 3BNBA 1F8NA 1FGMA 3V92A 1LNHA 2LG7A 3FG3A 3V99A 1GPLA 1QM6A 1IK3A 2OXEA 3U6GA 3IBZA 2PPLA 3BNEA 3BNCA 1JNQA 4QEYA 2IUKA 2XFDA 3FG1A 2P0MA 1FGQA 1KHOA 1ROVA 5EEOA 1LOXA
chains in the Genus database with same CATH topology
2LRGA 3U6GA 2LG7A 2XFEA 2LGEA 4QEYA 2XHHA 2XFDA 2XHJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U6G A;  2LRG A;  4QEY A; 
#chains in the Genus database with same CATH topology
 1OLP A;  1RRH A;  2IUJ A;  2LGE A;  2KXV A;  4WHA A;  2WXT A;  1QMD A;  1W52 X;  4WFO A;  2PVS A;  2XHH A;  4NRE A;  2WY6 A;  3V98 A;  1NO3 A;  1HPL A;  1N8Q A;  1FGT A;  1RP1 A;  1FGO A;  1GYG A;  3CWZ B;  3PZW A;  1YGE A;  2LRG A;  1ETH A;  2SBL A;  1FGR A;  3FG4 A;  4QWT A;  1LPB B;  1BU8 A;  3VF1 A;  1N8S A;  2QZ7 A;  2XHJ A;  3BND A;  1HU9 A;  1CA1 A;  2KXT A;  2QNG A;  2FNQ A;  2WXU A;  3O8Y A;  1RRL A;  1Y4K A;  1LPA B;  2XFE A;  3BNB A;  1F8N A;  1FGM A;  3V92 A;  1LNH A;  2LG7 A;  3FG3 A;  3V99 A;  1GPL A;  1QM6 A;  1IK3 A;  2OXE A;  3U6G A;  3IBZ A;  2PPL A;  3BNE A;  3BNC A;  1JNQ A;  4QEY A;  2IUK A;  2XFD A;  3FG1 A;  2P0M A;  1FGQ A;  1KHO A;  1ROV A;  5EEO A;  1LOX A; 
#chains in the Genus database with same CATH homology
 2LRG A;  3U6G A;  2LG7 A;  2XFE A;  2LGE A;  4QEY A;  2XHH A;  2XFD A;  2XHJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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