4QN0A

Crystal structure of the cps-6 mutant q130k
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
239
structure length
238
Chain Sequence
SRSAEIMKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAGVDRKLCEFKPDITFPKKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEISKFHVPLDAVERSAGLEIFARLDPKSIVKENGAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Endonuclease G, mitochondrial
publication title Oxidative Stress Impairs Cell Death by Repressing the Nuclease Activity of Mitochondrial Endonuclease G
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 72
structure length 238
sequence length 239
chains with identical sequence B, C, D
ec nomenclature ec 3.1.30.-:
pdb deposition date 2014-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 4qn0A00
3ISMA 2XH3A 5L0BA 5L0EA 3NKRA 5IJSA 1QL0A 4GTYA 4ZG9A 1ZM8A 2XR9A 3WAWA 2XRGA 5L0KA 3NKNA 5DLVA 5GKPA 4ZGAA 5INHA 4ZG7A 3WAXA 3S5BA 1SMNA 4GTXA 4QN0A 5LQQA 3WAVA 3NKOA 4B56A 5HRTA 2O3BA 4E3YA 1QAEA 4GTWA 3NKMA 5DLTA 5LIAA 3NKQA 5DLWA 3OWVA 4QGOA 1G8TA 5IJQA 3WAYA 4QH0A 4GTZA 4A1NA 5KXAA 2XGRA 5GKCA 3NKPA 4ZG6A
chains in the Genus database with same CATH superfamily
3ISMA 2XH3A 5L0BA 5L0EA 3NKRA 5IJSA 1QL0A 4GTYA 4ZG9A 1ZM8A 2XR9A 3WAWA 2XRGA 5L0KA 3NKNA 5DLVA 5GKPA 4ZGAA 5INHA 4ZG7A 3WAXA 3S5BA 1SMNA 4GTXA 4QN0A 5LQQA 3WAVA 3NKOA 4B56A 5HRTA 2O3BA 4E3YA 1QAEA 4GTWA 3NKMA 5DLTA 5LIAA 3NKQA 5DLWA 3OWVA 4QGOA 1G8TA 5IJQA 3WAYA 4QH0A 4GTZA 4A1NA 5KXAA 2XGRA 5GKCA 3NKPA 4ZG6A
chains in the Genus database with same CATH topology
3ISMA 2XH3A 5L0BA 5L0EA 3NKRA 5IJSA 1QL0A 4GTYA 4ZG9A 1ZM8A 2XR9A 3WAWA 2XRGA 5L0KA 3NKNA 5DLVA 5GKPA 4ZGAA 5INHA 4ZG7A 3WAXA 3S5BA 1SMNA 4GTXA 4QN0A 5LQQA 3WAVA 3NKOA 4B56A 5HRTA 2O3BA 4E3YA 1QAEA 4GTWA 3NKMA 5DLTA 5LIAA 3NKQA 5DLWA 3OWVA 4QGOA 1G8TA 5IJQA 3WAYA 4QH0A 4GTZA 4A1NA 5KXAA 2XGRA 5GKCA 3NKPA 4ZG6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ISM A;  2XH3 A;  5L0B A;  5L0E A;  3NKR A;  5IJS A;  1QL0 A;  4GTY A;  4ZG9 A;  1ZM8 A;  2XR9 A;  3WAW A;  2XRG A;  5L0K A;  3NKN A;  5DLV A;  5GKP A;  4ZGA A;  5INH A;  4ZG7 A;  3WAX A;  3S5B A;  1SMN A;  4GTX A;  4QN0 A;  5LQQ A;  3WAV A;  3NKO A;  4B56 A;  5HRT A;  2O3B A;  4E3Y A;  1QAE A;  4GTW A;  3NKM A;  5DLT A;  5LIA A;  3NKQ A;  5DLW A;  3OWV A;  4QGO A;  1G8T A;  5IJQ A;  3WAY A;  4QH0 A;  4GTZ A;  4A1N A;  5KXA A;  2XGR A;  5GKC A;  3NKP A;  4ZG6 A; 
#chains in the Genus database with same CATH topology
 3ISM A;  2XH3 A;  5L0B A;  5L0E A;  3NKR A;  5IJS A;  1QL0 A;  4GTY A;  4ZG9 A;  1ZM8 A;  2XR9 A;  3WAW A;  2XRG A;  5L0K A;  3NKN A;  5DLV A;  5GKP A;  4ZGA A;  5INH A;  4ZG7 A;  3WAX A;  3S5B A;  1SMN A;  4GTX A;  4QN0 A;  5LQQ A;  3WAV A;  3NKO A;  4B56 A;  5HRT A;  2O3B A;  4E3Y A;  1QAE A;  4GTW A;  3NKM A;  5DLT A;  5LIA A;  3NKQ A;  5DLW A;  3OWV A;  4QGO A;  1G8T A;  5IJQ A;  3WAY A;  4QH0 A;  4GTZ A;  4A1N A;  5KXA A;  2XGR A;  5GKC A;  3NKP A;  4ZG6 A; 
#chains in the Genus database with same CATH homology
 3ISM A;  2XH3 A;  5L0B A;  5L0E A;  3NKR A;  5IJS A;  1QL0 A;  4GTY A;  4ZG9 A;  1ZM8 A;  2XR9 A;  3WAW A;  2XRG A;  5L0K A;  3NKN A;  5DLV A;  5GKP A;  4ZGA A;  5INH A;  4ZG7 A;  3WAX A;  3S5B A;  1SMN A;  4GTX A;  4QN0 A;  5LQQ A;  3WAV A;  3NKO A;  4B56 A;  5HRT A;  2O3B A;  4E3Y A;  1QAE A;  4GTW A;  3NKM A;  5DLT A;  5LIA A;  3NKQ A;  5DLW A;  3OWV A;  4QGO A;  1G8T A;  5IJQ A;  3WAY A;  4QH0 A;  4GTZ A;  4A1N A;  5KXA A;  2XGR A;  5GKC A;  3NKP A;  4ZG6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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