4QNDA

Crystal structure of a semisweet
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
97
structure length
97
Chain Sequence
MALIERIGKALEPLMLVMGLISPLATMPQLYKLYVSHSEHALGLSLTTWLLYSFIALLWTIYGIYHKNPTIWVGNCLGFLMYVAMVVGIIAHTGGTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Chemical transport protein
publication title Structures of bacterial homologues of SWEET transporters in two distinct conformations.
pubmed doi rcsb
source organism Vibrio sp. n418
total genus 36
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2014-06-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.290 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 4qndA00
4QNCA 4RNGA 4X5NA 4X5MA 4QNDA
chains in the Genus database with same CATH superfamily
4FJXA 3SPYA 1LDKE 4DTSA 1N1CA 1MMOG 2ATQA 3C95A 3NCIA 1FZ4E 3SUOA 4FJIA 4J2EA 4JRPA 2B1EA 3C6OB 3L8BA 3LZIA 4FK4A 3QEWA 3CQ8A 3TAGA 2DY4A 4FJ7A 4RG8A 2P1QB 1FZ7E 4M42A 4FJJA 3MKSB 3N1BA 4KHQA 4DTRA 2PFVA 4ADNA 2OYQA 4X5MA 1FZIE 3LD8A 4KI6A 2JPNA 3KD5E 2P5GA 3QEIA 1NEXB 5IBKB 4FJ9A 2P1MB 1FXXA 2P1OB 3UIQA 4J2DA 3TAEA 1FZHE 4KHUA 4JS4A 1MHYG 2JHAA 3SQ2A 1XVDE 4DU1A 3QEPA 1FZ6E 1WAJA 4KHSA 2FW3A 3LDBA 3J2PA 2OVRB 2VJ4A 3BVOA 1Q9XA 1JW2A 3C94A 2B7MA 4ADOA 4DU4A 2P1PB 4FJ5A 2OZSA 2K5SA 1MHZG 3QNOA 1FZ0E 3HL8A 3SUNA 1FZ2E 1FZ8E 4DTXA 2VJ5A 4JRQA 4QNCA 4I9QA 1FZ3E 3LDSA 4KHWA 1FYZE 5H37A 2MZWB 4FJLA 4AKIA 4M41A 3RMBA 4FK0A 4I9LA 4RL5A 3SCXA 4EPHA 4FVMA 3SUPA 3HGLA 3NGIA 3SQ1A 2E31A 3C6NB 4GAMC 2MMBA 3SUQA 4J2AA 4M3ZA 3RMAA 1CLQA 2E32A 4IT5A 3RMDA 1XL3C 1IH7A 1MTYG 2OZMA 4M3TA 4ICGC 1FZ1E 1XVEE 2B8IA 4DU3A 1FPOA 2DTUA 3C6PB 1P22A 4RNGA 4EP9A 4DTUA 3CFPA 3TAFA 3NHGA 3SPZA 3L1NA 2JHPA 3NE6A 4AKGA 4M3RA 4M3UA 3OGKB 2RCUA 4FJKA 3QEVA 3SI6A 1XMHE 5IZ7A 1XMGE 5IREA 4JS5A 3SJJA 4FJGA 4KHNA 3TJYA 2DEBA 3WSOA 3QESA 2OVQB 1XMFE 3S9HA 2JQTA 1XVGE 3NAEA 4FK2A 4QNDA 2PFTA 3QETA 2JH8A 2FYOA 3QERA 4J2BA 4M3WA 3E4YA 3TL8B 4HCCA 4FJHA 1WAFA 2MW2A 3UO3A 4FJNA 1XVCE 3TABA 4DTNA 3SNNA 1Q9YA 3V7DB 4FJ8A 2LF3A 4DTOA 4DTJA 3LZJA 3QEXA 3UO2A 3SQ4A 4E3SA 1XVFE 2JHCA 4AKHA 2JH9A 4M45A 4B08A 1XVBE 1FZ5E 1XU5E 3OGMB 2P5OA 4EYWA 3SQ0A 1FS1A 3CFRA 4HCBA 4KHYA 2P1NB 2VIXA 3SVIA 1XU3E 3HGKE 3N1EA 4I6JB 4AI6A 1IG9A 3RWUA 4X5NA 2H4TA 2QXFA 2RKHA 3CFOA 4E4BA 3KD1E 4KI4A 4M3XA 2HD0A 4FJMA 4DTMA 3E4WA 3OGLB 4M3YA 3QNNA 2YB5A 3L2OB 1FZ9E 3J27A 3RMCA 2OVPB 3NDKA 3K2OA 3HP9A 3L0MA 2LF6A 4DTPA
chains in the Genus database with same CATH topology
4FJXA 3SPYA 1LDKE 4DTSA 3SUOA 1MMOG 2ATQA 3C95A 3NCIA 1FZ4E 4FJIA 4J2EA 4JRPA 2B1EA 3C6OB 3L8BA 3LZIA 4FK4A 3QEWA 3CQ8A 3TAGA 2DY4A 4FJ7A 4RG8A 2P1QB 1FZ7E 4M42A 4FJJA 3MKSB 3N1BA 4KHQA 4DTRA 2PFVA 4ADNA 2OYQA 4X5MA 1FZIE 3LD8A 4KI6A 2JPNA 3KD5E 2P5GA 3QEIA 1NEXB 5IBKB 4FJ9A 2P1MB 1FXXA 2P1OB 3UIQA 4J2DA 3TAEA 1FZHE 4KHUA 4JS4A 1MHYG 2JHAA 3SQ2A 1XVDE 4DU1A 3QEPA 1FZ6E 1WAJA 4KHSA 2FW3A 3LDBA 3J2PA 2OVRB 2VJ4A 1Q9XA 3C94A 2B7MA 4ADOA 4DU4A 2P1PB 4FJ5A 2OZSA 1MHZG 3QNOA 1FZ0E 3HL8A 3SUNA 1FZ2E 1FZ8E 4DTXA 2VJ5A 4JRQA 4QNCA 4I9QA 1FZ3E 3LDSA 4KHWA 1FYZE 5H37A 2MZWB 4FJLA 4AKIA 4M41A 3RMBA 4FK0A 4I9LA 4RL5A 3SCXA 4EPHA 4FVMA 3SUPA 3HGLA 3NGIA 3SQ1A 2E31A 3C6NB 4GAMC 2MMBA 3SUQA 4J2AA 4M3ZA 3RMAA 1CLQA 2E32A 3RMDA 1XL3C 1IH7A 1MTYG 2OZMA 4M3TA 1FZ1E 1XVEE 2B8IA 4DU3A 2DTUA 3C6PB 1P22A 4RNGA 4EP9A 4DTUA 3CFPA 3TAFA 3NHGA 3SPZA 3L1NA 2JHPA 3NE6A 4AKGA 4M3RA 4M3UA 3OGKB 2RCUA 4FJKA 3QEVA 3SI6A 1XMHE 5IZ7A 1XMGE 5IREA 4JS5A 3SJJA 4FJGA 4KHNA 3TJYA 2DEBA 3WSOA 3QESA 2OVQB 1XMFE 3S9HA 1XVGE 3NAEA 4FK2A 4QNDA 2PFTA 3QETA 2JH8A 2FYOA 3QERA 4J2BA 4M3WA 3E4YA 3TL8B 4HCCA 4FJHA 1WAFA 4FJNA 1XVCE 3TABA 4DTNA 3SNNA 1Q9YA 3V7DB 4FJ8A 2LF3A 4DTOA 4DTJA 3LZJA 3QEXA 3SQ4A 4E3SA 1XVFE 2JHCA 4AKHA 2JH9A 4M45A 4B08A 1XVBE 1FZ5E 1XU5E 3OGMB 2P5OA 4EYWA 3SQ0A 1FS1A 3CFRA 4HCBA 4KHYA 2P1NB 2VIXA 3SVIA 1XU3E 3HGKE 3N1EA 4I6JB 4AI6A 1IG9A 3RWUA 4X5NA 2H4TA 2QXFA 4E4BA 3CFOA 3KD1E 4KI4A 4M3XA 2HD0A 4FJMA 4DTMA 3E4WA 3OGLB 4M3YA 3QNNA 2YB5A 3L2OB 1FZ9E 3J27A 3RMCA 2OVPB 3NDKA 3K2OA 3HP9A 3L0MA 2LF6A 4DTPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QNC A;  4RNG A;  4X5N A;  4X5M A;  4QND A; 
#chains in the Genus database with same CATH topology
 4FJX A;  3SPY A;  1LDK E;  4DTS A;  1N1C A;  1MMO G;  2ATQ A;  3C95 A;  3NCI A;  1FZ4 E;  3SUO A;  4FJI A;  4J2E A;  4JRP A;  2B1E A;  3C6O B;  3L8B A;  3LZI A;  4FK4 A;  3QEW A;  3CQ8 A;  3TAG A;  2DY4 A;  4FJ7 A;  4RG8 A;  2P1Q B;  1FZ7 E;  4M42 A;  4FJJ A;  3MKS B;  3N1B A;  4KHQ A;  4DTR A;  2PFV A;  4ADN A;  2OYQ A;  4X5M A;  1FZI E;  3LD8 A;  4KI6 A;  2JPN A;  3KD5 E;  2P5G A;  3QEI A;  1NEX B;  5IBK B;  4FJ9 A;  2P1M B;  1FXX A;  2P1O B;  3UIQ A;  4J2D A;  3TAE A;  1FZH E;  4KHU A;  4JS4 A;  1MHY G;  2JHA A;  3SQ2 A;  1XVD E;  4DU1 A;  3QEP A;  1FZ6 E;  1WAJ A;  4KHS A;  2FW3 A;  3LDB A;  3J2P A;  2OVR B;  2VJ4 A;  3BVO A;  1Q9X A;  1JW2 A;  3C94 A;  2B7M A;  4ADO A;  4DU4 A;  2P1P B;  4FJ5 A;  2OZS A;  2K5S A;  1MHZ G;  3QNO A;  1FZ0 E;  3HL8 A;  3SUN A;  1FZ2 E;  1FZ8 E;  4DTX A;  2VJ5 A;  4JRQ A;  4QNC A;  4I9Q A;  1FZ3 E;  3LDS A;  4KHW A;  1FYZ E;  5H37 A;  2MZW B;  4FJL A;  4AKI A;  4M41 A;  3RMB A;  4FK0 A;  4I9L A;  4RL5 A;  3SCX A;  4EPH A;  4FVM A;  3SUP A;  3HGL A;  3NGI A;  3SQ1 A;  2E31 A;  3C6N B;  4GAM C;  2MMB A;  3SUQ A;  4J2A A;  4M3Z A;  3RMA A;  1CLQ A;  2E32 A;  4IT5 A;  3RMD A;  1XL3 C;  1IH7 A;  1MTY G;  2OZM A;  4M3T A;  4ICG C;  1FZ1 E;  1XVE E;  2B8I A;  4DU3 A;  1FPO A;  2DTU A;  3C6P B;  1P22 A;  4RNG A;  4EP9 A;  4DTU A;  3CFP A;  3TAF A;  3NHG A;  3SPZ A;  3L1N A;  2JHP A;  3NE6 A;  4AKG A;  4M3R A;  4M3U A;  3OGK B;  2RCU A;  4FJK A;  3QEV A;  3SI6 A;  1XMH E;  5IZ7 A;  1XMG E;  5IRE A;  4JS5 A;  3SJJ A;  4FJG A;  4KHN A;  3TJY A;  2DEB A;  3WSO A;  3QES A;  2OVQ B;  1XMF E;  3S9H A;  2JQT A;  1XVG E;  3NAE A;  4FK2 A;  4QND A;  2PFT A;  3QET A;  2JH8 A;  2FYO A;  3QER A;  4J2B A;  4M3W A;  3E4Y A;  3TL8 B;  4HCC A;  4FJH A;  1WAF A;  2MW2 A;  3UO3 A;  4FJN A;  1XVC E;  3TAB A;  4DTN A;  3SNN A;  1Q9Y A;  3V7D B;  4FJ8 A;  2LF3 A;  4DTO A;  4DTJ A;  3LZJ A;  3QEX A;  3UO2 A;  3SQ4 A;  4E3S A;  1XVF E;  2JHC A;  4AKH A;  2JH9 A;  4M45 A;  4B08 A;  1XVB E;  1FZ5 E;  1XU5 E;  3OGM B;  2P5O A;  4EYW A;  3SQ0 A;  1FS1 A;  3CFR A;  4HCB A;  4KHY A;  2P1N B;  2VIX A;  3SVI A;  1XU3 E;  3HGK E;  3N1E A;  4I6J B;  4AI6 A;  1IG9 A;  3RWU A;  4X5N A;  2H4T A;  2QXF A;  2RKH A;  3CFO A;  4E4B A;  3KD1 E;  4KI4 A;  4M3X A;  2HD0 A;  4FJM A;  4DTM A;  3E4W A;  3OGL B;  4M3Y A;  3QNN A;  2YB5 A;  3L2O B;  1FZ9 E;  3J27 A;  3RMC A;  2OVP B;  3NDK A;  3K2O A;  3HP9 A;  3L0M A;  2LF6 A;  4DTP A; 
#chains in the Genus database with same CATH homology
 4FJX A;  3SPY A;  1LDK E;  4DTS A;  3SUO A;  1MMO G;  2ATQ A;  3C95 A;  3NCI A;  1FZ4 E;  4FJI A;  4J2E A;  4JRP A;  2B1E A;  3C6O B;  3L8B A;  3LZI A;  4FK4 A;  3QEW A;  3CQ8 A;  3TAG A;  2DY4 A;  4FJ7 A;  4RG8 A;  2P1Q B;  1FZ7 E;  4M42 A;  4FJJ A;  3MKS B;  3N1B A;  4KHQ A;  4DTR A;  2PFV A;  4ADN A;  2OYQ A;  4X5M A;  1FZI E;  3LD8 A;  4KI6 A;  2JPN A;  3KD5 E;  2P5G A;  3QEI A;  1NEX B;  5IBK B;  4FJ9 A;  2P1M B;  1FXX A;  2P1O B;  3UIQ A;  4J2D A;  3TAE A;  1FZH E;  4KHU A;  4JS4 A;  1MHY G;  2JHA A;  3SQ2 A;  1XVD E;  4DU1 A;  3QEP A;  1FZ6 E;  1WAJ A;  4KHS A;  2FW3 A;  3LDB A;  3J2P A;  2OVR B;  2VJ4 A;  1Q9X A;  3C94 A;  2B7M A;  4ADO A;  4DU4 A;  2P1P B;  4FJ5 A;  2OZS A;  1MHZ G;  3QNO A;  1FZ0 E;  3HL8 A;  3SUN A;  1FZ2 E;  1FZ8 E;  4DTX A;  2VJ5 A;  4JRQ A;  4QNC A;  4I9Q A;  1FZ3 E;  3LDS A;  4KHW A;  1FYZ E;  5H37 A;  2MZW B;  4FJL A;  4AKI A;  4M41 A;  3RMB A;  4FK0 A;  4I9L A;  4RL5 A;  3SCX A;  4EPH A;  4FVM A;  3SUP A;  3HGL A;  3NGI A;  3SQ1 A;  2E31 A;  3C6N B;  4GAM C;  2MMB A;  3SUQ A;  4J2A A;  4M3Z A;  3RMA A;  1CLQ A;  2E32 A;  3RMD A;  1XL3 C;  1IH7 A;  1MTY G;  2OZM A;  4M3T A;  1FZ1 E;  1XVE E;  2B8I A;  4DU3 A;  2DTU A;  3C6P B;  1P22 A;  4RNG A;  4EP9 A;  4DTU A;  3CFP A;  3TAF A;  3NHG A;  3SPZ A;  3L1N A;  2JHP A;  3NE6 A;  4AKG A;  4M3R A;  4M3U A;  3OGK B;  2RCU A;  4FJK A;  3QEV A;  3SI6 A;  1XMH E;  5IZ7 A;  1XMG E;  5IRE A;  4JS5 A;  3SJJ A;  4FJG A;  4KHN A;  3TJY A;  2DEB A;  3WSO A;  3QES A;  2OVQ B;  1XMF E;  3S9H A;  1XVG E;  3NAE A;  4FK2 A;  4QND A;  2PFT A;  3QET A;  2JH8 A;  2FYO A;  3QER A;  4J2B A;  4M3W A;  3E4Y A;  3TL8 B;  4HCC A;  4FJH A;  1WAF A;  4FJN A;  1XVC E;  3TAB A;  4DTN A;  3SNN A;  1Q9Y A;  3V7D B;  4FJ8 A;  2LF3 A;  4DTO A;  4DTJ A;  3LZJ A;  3QEX A;  3SQ4 A;  4E3S A;  1XVF E;  2JHC A;  4AKH A;  2JH9 A;  4M45 A;  4B08 A;  1XVB E;  1FZ5 E;  1XU5 E;  3OGM B;  2P5O A;  4EYW A;  3SQ0 A;  1FS1 A;  3CFR A;  4HCB A;  4KHY A;  2P1N B;  2VIX A;  3SVI A;  1XU3 E;  3HGK E;  3N1E A;  4I6J B;  4AI6 A;  1IG9 A;  3RWU A;  4X5N A;  2H4T A;  2QXF A;  4E4B A;  3CFO A;  3KD1 E;  4KI4 A;  4M3X A;  2HD0 A;  4FJM A;  4DTM A;  3E4W A;  3OGL B;  4M3Y A;  3QNN A;  2YB5 A;  3L2O B;  1FZ9 E;  3J27 A;  3RMC A;  2OVP B;  3NDK A;  3K2O A;  3HP9 A;  3L0M A;  2LF6 A;  4DTP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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