4QOLA

Structure of bacillus pumilus catalase
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
total genus 151
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qolA00
1GGHA 2IUFA 4CABA 3DY5A 1CF9A 1QWMA 4QOQA 1IPHA 1SY7A 3PQ2A 4AULA 4AUMA 3PQ4A 3PQ8A 1SI8A 4BIMA 4QOOA 3P9RA 3TTVA 4B31A 1GGJA 3TTUA 1U5UA 1H6NA 1GWFA 1NM0A 2IQFA 4QOPA 1QF7A 1GGKA 1P7YA 3TTTA 2XQ1A 4ENVA 3TTWA 1M85A 3PQ6A 3HB6A 4AUNA 1GWEA 1HBZA 2A9EA 2XF2A 1P7ZA 4AUEA 1H7KA 3PQ3A 4B5KA 1F4JA 2CAGA 3PQ7A 1QWLA 2ISAA 1QWSA 4BFLA 3P9QA 4ENRA 2CAHA 3TTXA 1GGFA 1GG9A 4ENUA 3ZJ4A 1A4EA 2J2MA 1M7SA 1P80A 4QORA 4B2YA 1GGEA 4AJ9A 4B40A 5BV2P 4QONA 4QOLA 4ENSA 3P9SA 1P81A 3EJ6A 1GWHA 3PQ5A 4ENQA 1MQFA 3P9PA 4ENWA 4ENTA 3ZJ5A 3VU3A 4ENPA 4B7AA 1E93A 4QOMA 4E37A
chains in the Genus database with same CATH superfamily
1GGHA 2IUFA 4CABA 3DY5A 1CF9A 3RGSA 1QWMA 4QOQA 3RE8A 1IPHA 4B7HA 1SY7A 3PQ2A 4AULA 4AUMA 3PQ4A 3PQ8A 1DGHB 1SI8A 4BIMA 4QOOA 3P9RA 3TTVA 3TTUA 1GGJA 4B31A 5GKNA 1U5UA 1H6NA 1GWFA 1NM0A 3E4YA 4B7GA 2IQFA 4QOPA 1TH2A 1QF7A 1GGKA 1P7YA 3TTTA 2XQ1A 4ENVA 3TTWA 1M85A 3PQ6A 3HB6A 7CATA 4AUNA 1DGHA 1GWEA 1HBZA 2A9EA 1TGUA 2XF2A 1P7ZA 4AUEA 1DGGA 1H7KA 3PQ3A 4B5KA 1F4JA 2CAGA 3PQ7A 8CATA 1QWLA 2ISAA 1QWSA 4BFLA 4BLCA 3P9QA 4ENRA 2CAHA 1DGBA 3TTXA 1GGFA 1GG9A 4ENUA 3ZJ4A 1A4EA 2J2MA 1M7SA 3E4WA 1P80A 4QORA 3RGPA 4B2YA 1GGEA 4AJ9A 4B40A 5BV2P 1DGFA 1QQWA 4QONA 4QOLA 4B7FA 4ENSA 3P9SA 1P81A 3EJ6A 1GWHA 3PQ5A 3J7BA 4ENQA 1TH4A 1MQFA 3P9PA 4ENWA 4ENTA 3NWLA 3ZJ5A 3VU3A 4ENPA 1TH3A 4B7AA 1E93A 4QOMA 4E37A
chains in the Genus database with same CATH topology
1GGHA 2IUFA 4CABA 3DY5A 1CF9A 1QWMA 4QOQA 1IPHA 1SY7A 3PQ2A 4AULA 4AUMA 3PQ4A 3PQ8A 1SI8A 4BIMA 4QOOA 3P9RA 3TTVA 4B31A 1GGJA 3TTUA 1U5UA 1H6NA 1GWFA 1NM0A 2IQFA 4QOPA 1QF7A 1GGKA 1P7YA 3TTTA 2XQ1A 4ENVA 3TTWA 1M85A 3PQ6A 3HB6A 4AUNA 1GWEA 1HBZA 2A9EA 2XF2A 1P7ZA 4AUEA 1H7KA 3PQ3A 4B5KA 1F4JA 2CAGA 3PQ7A 1QWLA 2ISAA 1QWSA 4BFLA 3P9QA 4ENRA 2CAHA 3TTXA 1GGFA 1GG9A 4ENUA 3ZJ4A 1A4EA 2J2MA 1M7SA 1P80A 4QORA 4B2YA 1GGEA 4AJ9A 4B40A 5BV2P 4QONA 4QOLA 4ENSA 3P9SA 1P81A 3EJ6A 1GWHA 3PQ5A 4ENQA 1MQFA 3P9PA 4ENWA 4ENTA 3ZJ5A 3VU3A 4ENPA 4B7AA 1E93A 4QOMA 4E37A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GGH A;  2IUF A;  4CAB A;  3DY5 A;  1CF9 A;  1QWM A;  4QOQ A;  1IPH A;  1SY7 A;  3PQ2 A;  4AUL A;  4AUM A;  3PQ4 A;  3PQ8 A;  1SI8 A;  4BIM A;  4QOO A;  3P9R A;  3TTV A;  4B31 A;  1GGJ A;  3TTU A;  1U5U A;  1H6N A;  1GWF A;  1NM0 A;  2IQF A;  4QOP A;  1QF7 A;  1GGK A;  1P7Y A;  3TTT A;  2XQ1 A;  4ENV A;  3TTW A;  1M85 A;  3PQ6 A;  3HB6 A;  4AUN A;  1GWE A;  1HBZ A;  2A9E A;  2XF2 A;  1P7Z A;  4AUE A;  1H7K A;  3PQ3 A;  4B5K A;  1F4J A;  2CAG A;  3PQ7 A;  1QWL A;  2ISA A;  1QWS A;  4BFL A;  3P9Q A;  4ENR A;  2CAH A;  3TTX A;  1GGF A;  1GG9 A;  4ENU A;  3ZJ4 A;  1A4E A;  2J2M A;  1M7S A;  1P80 A;  4QOR A;  4B2Y A;  1GGE A;  4AJ9 A;  4B40 A;  5BV2 P;  4QON A;  4QOL A;  4ENS A;  3P9S A;  1P81 A;  3EJ6 A;  1GWH A;  3PQ5 A;  4ENQ A;  1MQF A;  3P9P A;  4ENW A;  4ENT A;  3ZJ5 A;  3VU3 A;  4ENP A;  4B7A A;  1E93 A;  4QOM A;  4E37 A; 
#chains in the Genus database with same CATH topology
 1GGH A;  2IUF A;  4CAB A;  3DY5 A;  1CF9 A;  3RGS A;  1QWM A;  4QOQ A;  3RE8 A;  1IPH A;  4B7H A;  1SY7 A;  3PQ2 A;  4AUL A;  4AUM A;  3PQ4 A;  3PQ8 A;  1DGH B;  1SI8 A;  4BIM A;  4QOO A;  3P9R A;  3TTV A;  3TTU A;  1GGJ A;  4B31 A;  5GKN A;  1U5U A;  1H6N A;  1GWF A;  1NM0 A;  3E4Y A;  4B7G A;  2IQF A;  4QOP A;  1TH2 A;  1QF7 A;  1GGK A;  1P7Y A;  3TTT A;  2XQ1 A;  4ENV A;  3TTW A;  1M85 A;  3PQ6 A;  3HB6 A;  7CAT A;  4AUN A;  1DGH A;  1GWE A;  1HBZ A;  2A9E A;  1TGU A;  2XF2 A;  1P7Z A;  4AUE A;  1DGG A;  1H7K A;  3PQ3 A;  4B5K A;  1F4J A;  2CAG A;  3PQ7 A;  8CAT A;  1QWL A;  2ISA A;  1QWS A;  4BFL A;  4BLC A;  3P9Q A;  4ENR A;  2CAH A;  1DGB A;  3TTX A;  1GGF A;  1GG9 A;  4ENU A;  3ZJ4 A;  1A4E A;  2J2M A;  1M7S A;  3E4W A;  1P80 A;  4QOR A;  3RGP A;  4B2Y A;  1GGE A;  4AJ9 A;  4B40 A;  5BV2 P;  1DGF A;  1QQW A;  4QON A;  4QOL A;  4B7F A;  4ENS A;  3P9S A;  1P81 A;  3EJ6 A;  1GWH A;  3PQ5 A;  3J7B A;  4ENQ A;  1TH4 A;  1MQF A;  3P9P A;  4ENW A;  4ENT A;  3NWL A;  3ZJ5 A;  3VU3 A;  4ENP A;  1TH3 A;  4B7A A;  1E93 A;  4QOM A;  4E37 A; 
#chains in the Genus database with same CATH homology
 1GGH A;  2IUF A;  4CAB A;  3DY5 A;  1CF9 A;  1QWM A;  4QOQ A;  1IPH A;  1SY7 A;  3PQ2 A;  4AUL A;  4AUM A;  3PQ4 A;  3PQ8 A;  1SI8 A;  4BIM A;  4QOO A;  3P9R A;  3TTV A;  4B31 A;  1GGJ A;  3TTU A;  1U5U A;  1H6N A;  1GWF A;  1NM0 A;  2IQF A;  4QOP A;  1QF7 A;  1GGK A;  1P7Y A;  3TTT A;  2XQ1 A;  4ENV A;  3TTW A;  1M85 A;  3PQ6 A;  3HB6 A;  4AUN A;  1GWE A;  1HBZ A;  2A9E A;  2XF2 A;  1P7Z A;  4AUE A;  1H7K A;  3PQ3 A;  4B5K A;  1F4J A;  2CAG A;  3PQ7 A;  1QWL A;  2ISA A;  1QWS A;  4BFL A;  3P9Q A;  4ENR A;  2CAH A;  3TTX A;  1GGF A;  1GG9 A;  4ENU A;  3ZJ4 A;  1A4E A;  2J2M A;  1M7S A;  1P80 A;  4QOR A;  4B2Y A;  1GGE A;  4AJ9 A;  4B40 A;  5BV2 P;  4QON A;  4QOL A;  4ENS A;  3P9S A;  1P81 A;  3EJ6 A;  1GWH A;  3PQ5 A;  4ENQ A;  1MQF A;  3P9P A;  4ENW A;  4ENT A;  3ZJ5 A;  3VU3 A;  4ENP A;  4B7A A;  1E93 A;  4QOM A;  4E37 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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