4QOMA

Bacillus pumilus catalase with pyrogallol bound
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
total genus 151
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qomA00
3DY5A 2IUFA 4ENVA 1P80A 4QOQA 1GWHA 4QONA 1E93A 1M85A 1MQFA 1GWEA 1F4JA 4ENRA 3ZJ4A 4B31A 3PQ7A 2XF2A 4AUEA 1SY7A 4BFLA 2CAGA 1GWFA 4B7AA 3PQ5A 4AUMA 1GGFA 2IQFA 1GGEA 3EJ6A 4CABA 1P81A 4AUNA 1U5UA 4BIMA 4B2YA 3P9SA 3PQ4A 1QWLA 2J2MA 3PQ6A 2XQ1A 3P9RA 3TTWA 5BV2P 1P7ZA 2ISAA 4AULA 3TTTA 1IPHA 4ENPA 1QWMA 2CAHA 1QF7A 1H6NA 1GGJA 3PQ8A 3TTUA 3P9PA 4ENTA 1P7YA 3ZJ5A 4E37A 1HBZA 4B40A 4ENUA 1SI8A 1GGHA 4QOPA 3VU3A 1GG9A 4ENQA 4ENSA 3PQ2A 2A9EA 4B5KA 1M7SA 4ENWA 3HB6A 3TTVA 1GGKA 3PQ3A 4QOLA 4AJ9A 1CF9A 1A4EA 3P9QA 1QWSA 4QOOA 1H7KA 4QORA 4QOMA 3TTXA 1NM0A
chains in the Genus database with same CATH superfamily
3DY5A 2IUFA 4ENVA 1P80A 4QOQA 1GWHA 4QONA 1E93A 1M85A 1DGHA 1MQFA 1GWEA 4B7GA 1F4JA 1TGUA 3ZJ4A 4ENRA 4B31A 3PQ7A 2XF2A 4AUEA 4BLCA 1SY7A 4BFLA 2CAGA 1GWFA 4B7AA 3PQ5A 4AUMA 1GGFA 2IQFA 1GGEA 3EJ6A 4CABA 1P81A 4B7FA 4AUNA 1U5UA 4BIMA 4B2YA 3P9SA 3J7BA 3PQ4A 1DGBA 1QWLA 3RE8A 2J2MA 3PQ6A 2XQ1A 3P9RA 3TTWA 5BV2P 1P7ZA 2ISAA 4AULA 3TTTA 1IPHA 4ENPA 1QWMA 2CAHA 1DGHB 1QF7A 1TH2A 1H6NA 3E4YA 1GGJA 3PQ8A 3TTUA 3RGSA 3P9PA 4ENTA 1P7YA 3ZJ5A 3E4WA 4E37A 1HBZA 1TH4A 4B40A 4ENUA 1SI8A 1GGHA 4QOPA 3VU3A 3NWLA 1GG9A 4ENQA 4ENSA 3PQ2A 2A9EA 1DGFA 4B5KA 3RGPA 1M7SA 4ENWA 8CATA 4B7HA 1DGGA 7CATA 5GKNA 3HB6A 3TTVA 1GGKA 3PQ3A 4QOLA 1QQWA 1TH3A 4AJ9A 1CF9A 1A4EA 3P9QA 1QWSA 4QOOA 1H7KA 4QORA 4QOMA 3TTXA 1NM0A
chains in the Genus database with same CATH topology
3DY5A 2IUFA 4ENVA 1P80A 4QOQA 1GWHA 4QONA 1E93A 1M85A 1MQFA 1GWEA 1F4JA 4ENRA 3ZJ4A 4B31A 3PQ7A 2XF2A 4AUEA 1SY7A 4BFLA 2CAGA 1GWFA 4B7AA 3PQ5A 4AUMA 1GGFA 2IQFA 1GGEA 3EJ6A 4CABA 1P81A 4AUNA 1U5UA 4BIMA 4B2YA 3P9SA 3PQ4A 1QWLA 2J2MA 3PQ6A 2XQ1A 3P9RA 3TTWA 5BV2P 1P7ZA 2ISAA 4AULA 3TTTA 1IPHA 4ENPA 1QWMA 2CAHA 1QF7A 1H6NA 1GGJA 3PQ8A 3TTUA 3P9PA 4ENTA 1P7YA 3ZJ5A 4E37A 1HBZA 4B40A 4ENUA 1SI8A 1GGHA 4QOPA 3VU3A 1GG9A 4ENQA 4ENSA 3PQ2A 2A9EA 4B5KA 1M7SA 4ENWA 3HB6A 3TTVA 1GGKA 3PQ3A 4QOLA 4AJ9A 1CF9A 1A4EA 3P9QA 1QWSA 4QOOA 1H7KA 4QORA 4QOMA 3TTXA 1NM0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DY5 A;  2IUF A;  4ENV A;  1P80 A;  4QOQ A;  1GWH A;  4QON A;  1E93 A;  1M85 A;  1MQF A;  1GWE A;  1F4J A;  4ENR A;  3ZJ4 A;  4B31 A;  3PQ7 A;  2XF2 A;  4AUE A;  1SY7 A;  4BFL A;  2CAG A;  1GWF A;  4B7A A;  3PQ5 A;  4AUM A;  1GGF A;  2IQF A;  1GGE A;  3EJ6 A;  4CAB A;  1P81 A;  4AUN A;  1U5U A;  4BIM A;  4B2Y A;  3P9S A;  3PQ4 A;  1QWL A;  2J2M A;  3PQ6 A;  2XQ1 A;  3P9R A;  3TTW A;  5BV2 P;  1P7Z A;  2ISA A;  4AUL A;  3TTT A;  1IPH A;  4ENP A;  1QWM A;  2CAH A;  1QF7 A;  1H6N A;  1GGJ A;  3PQ8 A;  3TTU A;  3P9P A;  4ENT A;  1P7Y A;  3ZJ5 A;  4E37 A;  1HBZ A;  4B40 A;  4ENU A;  1SI8 A;  1GGH A;  4QOP A;  3VU3 A;  1GG9 A;  4ENQ A;  4ENS A;  3PQ2 A;  2A9E A;  4B5K A;  1M7S A;  4ENW A;  3HB6 A;  3TTV A;  1GGK A;  3PQ3 A;  4QOL A;  4AJ9 A;  1CF9 A;  1A4E A;  3P9Q A;  1QWS A;  4QOO A;  1H7K A;  4QOR A;  4QOM A;  3TTX A;  1NM0 A; 
#chains in the Genus database with same CATH topology
 3DY5 A;  2IUF A;  4ENV A;  1P80 A;  4QOQ A;  1GWH A;  4QON A;  1E93 A;  1M85 A;  1DGH A;  1MQF A;  1GWE A;  4B7G A;  1F4J A;  1TGU A;  3ZJ4 A;  4ENR A;  4B31 A;  3PQ7 A;  2XF2 A;  4AUE A;  4BLC A;  1SY7 A;  4BFL A;  2CAG A;  1GWF A;  4B7A A;  3PQ5 A;  4AUM A;  1GGF A;  2IQF A;  1GGE A;  3EJ6 A;  4CAB A;  1P81 A;  4B7F A;  4AUN A;  1U5U A;  4BIM A;  4B2Y A;  3P9S A;  3J7B A;  3PQ4 A;  1DGB A;  1QWL A;  3RE8 A;  2J2M A;  3PQ6 A;  2XQ1 A;  3P9R A;  3TTW A;  5BV2 P;  1P7Z A;  2ISA A;  4AUL A;  3TTT A;  1IPH A;  4ENP A;  1QWM A;  2CAH A;  1DGH B;  1QF7 A;  1TH2 A;  1H6N A;  3E4Y A;  1GGJ A;  3PQ8 A;  3TTU A;  3RGS A;  3P9P A;  4ENT A;  1P7Y A;  3ZJ5 A;  3E4W A;  4E37 A;  1HBZ A;  1TH4 A;  4B40 A;  4ENU A;  1SI8 A;  1GGH A;  4QOP A;  3VU3 A;  3NWL A;  1GG9 A;  4ENQ A;  4ENS A;  3PQ2 A;  2A9E A;  1DGF A;  4B5K A;  3RGP A;  1M7S A;  4ENW A;  8CAT A;  4B7H A;  1DGG A;  7CAT A;  5GKN A;  3HB6 A;  3TTV A;  1GGK A;  3PQ3 A;  4QOL A;  1QQW A;  1TH3 A;  4AJ9 A;  1CF9 A;  1A4E A;  3P9Q A;  1QWS A;  4QOO A;  1H7K A;  4QOR A;  4QOM A;  3TTX A;  1NM0 A; 
#chains in the Genus database with same CATH homology
 3DY5 A;  2IUF A;  4ENV A;  1P80 A;  4QOQ A;  1GWH A;  4QON A;  1E93 A;  1M85 A;  1MQF A;  1GWE A;  1F4J A;  4ENR A;  3ZJ4 A;  4B31 A;  3PQ7 A;  2XF2 A;  4AUE A;  1SY7 A;  4BFL A;  2CAG A;  1GWF A;  4B7A A;  3PQ5 A;  4AUM A;  1GGF A;  2IQF A;  1GGE A;  3EJ6 A;  4CAB A;  1P81 A;  4AUN A;  1U5U A;  4BIM A;  4B2Y A;  3P9S A;  3PQ4 A;  1QWL A;  2J2M A;  3PQ6 A;  2XQ1 A;  3P9R A;  3TTW A;  5BV2 P;  1P7Z A;  2ISA A;  4AUL A;  3TTT A;  1IPH A;  4ENP A;  1QWM A;  2CAH A;  1QF7 A;  1H6N A;  1GGJ A;  3PQ8 A;  3TTU A;  3P9P A;  4ENT A;  1P7Y A;  3ZJ5 A;  4E37 A;  1HBZ A;  4B40 A;  4ENU A;  1SI8 A;  1GGH A;  4QOP A;  3VU3 A;  1GG9 A;  4ENQ A;  4ENS A;  3PQ2 A;  2A9E A;  4B5K A;  1M7S A;  4ENW A;  3HB6 A;  3TTV A;  1GGK A;  3PQ3 A;  4QOL A;  4AJ9 A;  1CF9 A;  1A4E A;  3P9Q A;  1QWS A;  4QOO A;  1H7K A;  4QOR A;  4QOM A;  3TTX A;  1NM0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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