4QOMA

Bacillus pumilus catalase with pyrogallol bound
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
source organism Bacillus pumilus
total genus 151
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qomA00
1P7ZA 1GGKA 1NM0A 3P9PA 3PQ7A 2XF2A 1H7KA 1H6NA 3DY5A 1QWMA 1GWEA 4ENQA 1GGJA 3PQ3A 3EJ6A 1M85A 3HB6A 4ENSA 4B2YA 1SY7A 1GGFA 4B40A 4QOOA 1GGEA 1M7SA 4QOPA 4B31A 1IPHA 2IQFA 3PQ8A 2A9EA 3TTVA 4BIMA 4QOLA 1QWLA 1CF9A 3TTTA 1SI8A 1F4JA 3P9SA 4AJ9A 4AUMA 4AULA 2J2MA 3ZJ4A 4AUEA 4ENUA 4ENPA 1E93A 4ENWA 2CAHA 4ENVA 4ENTA 3VU3A 1U5UA 3PQ6A 4QOQA 1P7YA 1A4EA 3P9RA 1QF7A 3PQ5A 1HBZA 4AUNA 3PQ4A 2IUFA 4BFLA 3P9QA 4QONA 2CAGA 4B5KA 3TTXA 4B7AA 1GWHA 3TTWA 1GWFA 1MQFA 3PQ2A 4QOMA 4E37A 3ZJ5A 1P81A 1P80A 4ENRA 3TTUA 2XQ1A 1GGHA 4CABA 1GG9A 5BV2P 1QWSA 2ISAA 4QORA
chains in the Genus database with same CATH superfamily
1P7ZA 1GGKA 1NM0A 3P9PA 7CATA 1TH3A 3PQ7A 4BLCA 2XF2A 1H7KA 1H6NA 1TGUA 4B7HA 3DY5A 1DGBA 3RE8A 1QWMA 1GWEA 4ENQA 1GGJA 3PQ3A 3EJ6A 1M85A 3HB6A 1DGHB 4ENSA 3NWLA 4B2YA 1SY7A 1GGFA 4B40A 4B7FA 4QOOA 1GGEA 1DGFA 1M7SA 4QOPA 4B31A 1IPHA 2IQFA 3PQ8A 2A9EA 3RGPA 3TTVA 4BIMA 1DGHA 4QOLA 1QWLA 3E4YA 1CF9A 3TTTA 1SI8A 1F4JA 3P9SA 1TH2A 4AJ9A 4AUMA 4AULA 2J2MA 3ZJ4A 4AUEA 4ENUA 4ENPA 3J7BA 1E93A 4ENWA 2CAHA 4ENVA 4ENTA 3VU3A 1U5UA 3PQ6A 4QOQA 1P7YA 1A4EA 3P9RA 1QF7A 3PQ5A 1HBZA 1QQWA 3PQ4A 4AUNA 2IUFA 4BFLA 3P9QA 4QONA 4B7GA 2CAGA 5GKNA 4B5KA 3TTXA 4B7AA 3RGSA 1GWHA 3TTWA 1GWFA 1MQFA 3PQ2A 4QOMA 3E4WA 4E37A 3ZJ5A 1P81A 1P80A 4ENRA 3TTUA 2XQ1A 1GGHA 4CABA 1GG9A 5BV2P 1QWSA 1DGGA 8CATA 2ISAA 1TH4A 4QORA
chains in the Genus database with same CATH topology
1P7ZA 1GGKA 1NM0A 3P9PA 3PQ7A 2XF2A 1H7KA 1H6NA 3DY5A 1QWMA 1GWEA 4ENQA 1GGJA 3PQ3A 3EJ6A 1M85A 3HB6A 4ENSA 4B2YA 1SY7A 1GGFA 4B40A 4QOOA 1GGEA 1M7SA 4QOPA 4B31A 1IPHA 2IQFA 3PQ8A 2A9EA 3TTVA 4BIMA 4QOLA 1QWLA 1CF9A 3TTTA 1SI8A 1F4JA 3P9SA 4AJ9A 4AUMA 4AULA 2J2MA 3ZJ4A 4AUEA 4ENUA 4ENPA 1E93A 4ENWA 2CAHA 4ENVA 4ENTA 3VU3A 1U5UA 3PQ6A 4QOQA 1P7YA 1A4EA 3P9RA 1QF7A 3PQ5A 1HBZA 4AUNA 3PQ4A 2IUFA 4BFLA 3P9QA 4QONA 2CAGA 4B5KA 3TTXA 4B7AA 1GWHA 3TTWA 1GWFA 1MQFA 3PQ2A 4QOMA 4E37A 3ZJ5A 1P81A 1P80A 4ENRA 3TTUA 2XQ1A 1GGHA 4CABA 1GG9A 5BV2P 1QWSA 2ISAA 4QORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P7Z A;  1GGK A;  1NM0 A;  3P9P A;  3PQ7 A;  2XF2 A;  1H7K A;  1H6N A;  3DY5 A;  1QWM A;  1GWE A;  4ENQ A;  1GGJ A;  3PQ3 A;  3EJ6 A;  1M85 A;  3HB6 A;  4ENS A;  4B2Y A;  1SY7 A;  1GGF A;  4B40 A;  4QOO A;  1GGE A;  1M7S A;  4QOP A;  4B31 A;  1IPH A;  2IQF A;  3PQ8 A;  2A9E A;  3TTV A;  4BIM A;  4QOL A;  1QWL A;  1CF9 A;  3TTT A;  1SI8 A;  1F4J A;  3P9S A;  4AJ9 A;  4AUM A;  4AUL A;  2J2M A;  3ZJ4 A;  4AUE A;  4ENU A;  4ENP A;  1E93 A;  4ENW A;  2CAH A;  4ENV A;  4ENT A;  3VU3 A;  1U5U A;  3PQ6 A;  4QOQ A;  1P7Y A;  1A4E A;  3P9R A;  1QF7 A;  3PQ5 A;  1HBZ A;  4AUN A;  3PQ4 A;  2IUF A;  4BFL A;  3P9Q A;  4QON A;  2CAG A;  4B5K A;  3TTX A;  4B7A A;  1GWH A;  3TTW A;  1GWF A;  1MQF A;  3PQ2 A;  4QOM A;  4E37 A;  3ZJ5 A;  1P81 A;  1P80 A;  4ENR A;  3TTU A;  2XQ1 A;  1GGH A;  4CAB A;  1GG9 A;  5BV2 P;  1QWS A;  2ISA A;  4QOR A; 
#chains in the Genus database with same CATH topology
 1P7Z A;  1GGK A;  1NM0 A;  3P9P A;  7CAT A;  1TH3 A;  3PQ7 A;  4BLC A;  2XF2 A;  1H7K A;  1H6N A;  1TGU A;  4B7H A;  3DY5 A;  1DGB A;  3RE8 A;  1QWM A;  1GWE A;  4ENQ A;  1GGJ A;  3PQ3 A;  3EJ6 A;  1M85 A;  3HB6 A;  1DGH B;  4ENS A;  3NWL A;  4B2Y A;  1SY7 A;  1GGF A;  4B40 A;  4B7F A;  4QOO A;  1GGE A;  1DGF A;  1M7S A;  4QOP A;  4B31 A;  1IPH A;  2IQF A;  3PQ8 A;  2A9E A;  3RGP A;  3TTV A;  4BIM A;  1DGH A;  4QOL A;  1QWL A;  3E4Y A;  1CF9 A;  3TTT A;  1SI8 A;  1F4J A;  3P9S A;  1TH2 A;  4AJ9 A;  4AUM A;  4AUL A;  2J2M A;  3ZJ4 A;  4AUE A;  4ENU A;  4ENP A;  3J7B A;  1E93 A;  4ENW A;  2CAH A;  4ENV A;  4ENT A;  3VU3 A;  1U5U A;  3PQ6 A;  4QOQ A;  1P7Y A;  1A4E A;  3P9R A;  1QF7 A;  3PQ5 A;  1HBZ A;  1QQW A;  3PQ4 A;  4AUN A;  2IUF A;  4BFL A;  3P9Q A;  4QON A;  4B7G A;  2CAG A;  5GKN A;  4B5K A;  3TTX A;  4B7A A;  3RGS A;  1GWH A;  3TTW A;  1GWF A;  1MQF A;  3PQ2 A;  4QOM A;  3E4W A;  4E37 A;  3ZJ5 A;  1P81 A;  1P80 A;  4ENR A;  3TTU A;  2XQ1 A;  1GGH A;  4CAB A;  1GG9 A;  5BV2 P;  1QWS A;  1DGG A;  8CAT A;  2ISA A;  1TH4 A;  4QOR A; 
#chains in the Genus database with same CATH homology
 1P7Z A;  1GGK A;  1NM0 A;  3P9P A;  3PQ7 A;  2XF2 A;  1H7K A;  1H6N A;  3DY5 A;  1QWM A;  1GWE A;  4ENQ A;  1GGJ A;  3PQ3 A;  3EJ6 A;  1M85 A;  3HB6 A;  4ENS A;  4B2Y A;  1SY7 A;  1GGF A;  4B40 A;  4QOO A;  1GGE A;  1M7S A;  4QOP A;  4B31 A;  1IPH A;  2IQF A;  3PQ8 A;  2A9E A;  3TTV A;  4BIM A;  4QOL A;  1QWL A;  1CF9 A;  3TTT A;  1SI8 A;  1F4J A;  3P9S A;  4AJ9 A;  4AUM A;  4AUL A;  2J2M A;  3ZJ4 A;  4AUE A;  4ENU A;  4ENP A;  1E93 A;  4ENW A;  2CAH A;  4ENV A;  4ENT A;  3VU3 A;  1U5U A;  3PQ6 A;  4QOQ A;  1P7Y A;  1A4E A;  3P9R A;  1QF7 A;  3PQ5 A;  1HBZ A;  4AUN A;  3PQ4 A;  2IUF A;  4BFL A;  3P9Q A;  4QON A;  2CAG A;  4B5K A;  3TTX A;  4B7A A;  1GWH A;  3TTW A;  1GWF A;  1MQF A;  3PQ2 A;  4QOM A;  4E37 A;  3ZJ5 A;  1P81 A;  1P80 A;  4ENR A;  3TTU A;  2XQ1 A;  1GGH A;  4CAB A;  1GG9 A;  5BV2 P;  1QWS A;  2ISA A;  4QOR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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