4QOOA

Structure of bacillus pumilus catalase with resorcinol bound.
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
480
structure length
480
Chain Sequence
HKNLTTNQGVPVGDNQNSRTAGHRGPSFLDDYHLIEKLAHFDRERIPERVVHARGAGAYGVFEVENSMEKHTRAAFLSEEGKQTDVFVRFSTVIHPKGSPETLRDPRGFAVKFYTEEGNYDLVGNNLPIFFIRDALKFPDMVHSLKPDPVTNIQDPDRYWDFMTLTPESTHMLTWLFSDEGIPANYAEMRGSGVHTFRWVNKYGETKYVKYHWRPSEGIRNLSMEEAAEIQANDFQHATRDLYDRIEKGNYPAWDLYVQLMPLSDYDELDYDPCDPTKTWSEEDYPLQKVGRMTLNRNPENFFAETEQAAFTPSALVPGIEASEDKLLQGRLFSYPDTQRHRLGANYMRIPVNCPYAPVHNNQQDGFMTTTRPSGHINYEPNRYDDQPKENPHYKESEPVLHGDRMVRQKIEKPNDFKQAGEKYRSYSEEEKQALIKNLTADLKGVNEKTKLLAICNFYRADEDYGQRLADSLGVDIRSY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Unprecedented access of phenolic substrates to the heme active site of a catalase: Substrate binding and peroxidase-like reactivity of Bacillus pumilus catalase monitored by X-ray crystallography and EPR spectroscopy.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Bacillus pumilus
molecule keywords Catalase
total genus 154
structure length 480
sequence length 480
chains with identical sequence B, C, D
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2014-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 4qooA00
2A9EA 1GGEA 2ISAA 1GGJA 2CAHA 4AJ9A 3TTWA 2IUFA 1SY7A 4ENUA 4B31A 1F4JA 3TTXA 4AUMA 4QONA 3TTTA 3TTUA 3PQ7A 4ENPA 4AUEA 3PQ2A 2IQFA 3P9RA 4ENSA 4QORA 4B5KA 1GWHA 1P7ZA 3DY5A 1P80A 4ENTA 4ENQA 1GGFA 4AULA 3HB6A 1NM0A 1E93A 4B2YA 4B7AA 3PQ8A 1QWSA 3PQ4A 4BIMA 3ZJ4A 1P81A 4QOLA 3VU3A 4QOQA 3P9PA 1M85A 1H7KA 3PQ3A 1CF9A 4ENVA 1A4EA 4B40A 1U5UA 4QOPA 4BFLA 4ENRA 1M7SA 2CAGA 4AUNA 4ENWA 3P9QA 3ZJ5A 1MQFA 1HBZA 1SI8A 1QF7A 1GGHA 1QWMA 2XQ1A 1IPHA 1GWEA 2XF2A 5BV2P 4E37A 1H6NA 1QWLA 1P7YA 2J2MA 3TTVA 4QOOA 4CABA 3EJ6A 1GWFA 1GG9A 1GGKA 3P9SA 3PQ6A 4QOMA 3PQ5A
chains in the Genus database with same CATH superfamily
4B7FA 2A9EA 1GGEA 2ISAA 1GGJA 2CAHA 4AJ9A 3TTWA 2IUFA 1SY7A 4ENUA 4B31A 1F4JA 3TTXA 1DGFA 4AUMA 4QONA 3TTTA 3TTUA 3PQ7A 4ENPA 1TH2A 4AUEA 3PQ2A 2IQFA 3P9RA 1DGHA 4ENSA 4QORA 4B5KA 1GWHA 1P7ZA 3DY5A 1P80A 3RGSA 4ENTA 4ENQA 1GGFA 4AULA 3HB6A 1NM0A 1E93A 4B2YA 4B7AA 1QQWA 3PQ8A 1QWSA 3PQ4A 4BIMA 4B7HA 3ZJ4A 4B7GA 1P81A 4QOLA 3VU3A 4QOQA 3E4YA 3P9PA 1M85A 1H7KA 3PQ3A 1CF9A 1TGUA 4ENVA 1DGHB 1DGBA 1A4EA 4B40A 1U5UA 4QOPA 4BFLA 4ENRA 1M7SA 2CAGA 3RGPA 4AUNA 4ENWA 3P9QA 3ZJ5A 1MQFA 7CATA 1HBZA 1SI8A 1QF7A 1GGHA 1QWMA 2XQ1A 4BLCA 1IPHA 1GWEA 1DGGA 2XF2A 5BV2P 4E37A 1H6NA 1QWLA 1P7YA 2J2MA 3TTVA 5GKNA 4QOOA 3RE8A 3E4WA 3J7BA 4CABA 3EJ6A 1GWFA 1TH4A 8CATA 1GG9A 1GGKA 3P9SA 3PQ6A 1TH3A 3NWLA 4QOMA 3PQ5A
chains in the Genus database with same CATH topology
2A9EA 1GGEA 2ISAA 1GGJA 2CAHA 4AJ9A 3TTWA 2IUFA 1SY7A 4ENUA 4B31A 1F4JA 3TTXA 4AUMA 4QONA 3TTTA 3TTUA 3PQ7A 4ENPA 4AUEA 3PQ2A 2IQFA 3P9RA 4ENSA 4QORA 4B5KA 1GWHA 1P7ZA 3DY5A 1P80A 4ENTA 4ENQA 1GGFA 4AULA 3HB6A 1NM0A 1E93A 4B2YA 4B7AA 3PQ8A 1QWSA 3PQ4A 4BIMA 3ZJ4A 1P81A 4QOLA 3VU3A 4QOQA 3P9PA 1M85A 1H7KA 3PQ3A 1CF9A 4ENVA 1A4EA 4B40A 1U5UA 4QOPA 4BFLA 4ENRA 1M7SA 2CAGA 4AUNA 4ENWA 3P9QA 3ZJ5A 1MQFA 1HBZA 1SI8A 1QF7A 1GGHA 1QWMA 2XQ1A 1IPHA 1GWEA 2XF2A 5BV2P 4E37A 1H6NA 1QWLA 1P7YA 2J2MA 3TTVA 4QOOA 4CABA 3EJ6A 1GWFA 1GG9A 1GGKA 3P9SA 3PQ6A 4QOMA 3PQ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2A9E A;  1GGE A;  2ISA A;  1GGJ A;  2CAH A;  4AJ9 A;  3TTW A;  2IUF A;  1SY7 A;  4ENU A;  4B31 A;  1F4J A;  3TTX A;  4AUM A;  4QON A;  3TTT A;  3TTU A;  3PQ7 A;  4ENP A;  4AUE A;  3PQ2 A;  2IQF A;  3P9R A;  4ENS A;  4QOR A;  4B5K A;  1GWH A;  1P7Z A;  3DY5 A;  1P80 A;  4ENT A;  4ENQ A;  1GGF A;  4AUL A;  3HB6 A;  1NM0 A;  1E93 A;  4B2Y A;  4B7A A;  3PQ8 A;  1QWS A;  3PQ4 A;  4BIM A;  3ZJ4 A;  1P81 A;  4QOL A;  3VU3 A;  4QOQ A;  3P9P A;  1M85 A;  1H7K A;  3PQ3 A;  1CF9 A;  4ENV A;  1A4E A;  4B40 A;  1U5U A;  4QOP A;  4BFL A;  4ENR A;  1M7S A;  2CAG A;  4AUN A;  4ENW A;  3P9Q A;  3ZJ5 A;  1MQF A;  1HBZ A;  1SI8 A;  1QF7 A;  1GGH A;  1QWM A;  2XQ1 A;  1IPH A;  1GWE A;  2XF2 A;  5BV2 P;  4E37 A;  1H6N A;  1QWL A;  1P7Y A;  2J2M A;  3TTV A;  4QOO A;  4CAB A;  3EJ6 A;  1GWF A;  1GG9 A;  1GGK A;  3P9S A;  3PQ6 A;  4QOM A;  3PQ5 A; 
#chains in the Genus database with same CATH topology
 4B7F A;  2A9E A;  1GGE A;  2ISA A;  1GGJ A;  2CAH A;  4AJ9 A;  3TTW A;  2IUF A;  1SY7 A;  4ENU A;  4B31 A;  1F4J A;  3TTX A;  1DGF A;  4AUM A;  4QON A;  3TTT A;  3TTU A;  3PQ7 A;  4ENP A;  1TH2 A;  4AUE A;  3PQ2 A;  2IQF A;  3P9R A;  1DGH A;  4ENS A;  4QOR A;  4B5K A;  1GWH A;  1P7Z A;  3DY5 A;  1P80 A;  3RGS A;  4ENT A;  4ENQ A;  1GGF A;  4AUL A;  3HB6 A;  1NM0 A;  1E93 A;  4B2Y A;  4B7A A;  1QQW A;  3PQ8 A;  1QWS A;  3PQ4 A;  4BIM A;  4B7H A;  3ZJ4 A;  4B7G A;  1P81 A;  4QOL A;  3VU3 A;  4QOQ A;  3E4Y A;  3P9P A;  1M85 A;  1H7K A;  3PQ3 A;  1CF9 A;  1TGU A;  4ENV A;  1DGH B;  1DGB A;  1A4E A;  4B40 A;  1U5U A;  4QOP A;  4BFL A;  4ENR A;  1M7S A;  2CAG A;  3RGP A;  4AUN A;  4ENW A;  3P9Q A;  3ZJ5 A;  1MQF A;  7CAT A;  1HBZ A;  1SI8 A;  1QF7 A;  1GGH A;  1QWM A;  2XQ1 A;  4BLC A;  1IPH A;  1GWE A;  1DGG A;  2XF2 A;  5BV2 P;  4E37 A;  1H6N A;  1QWL A;  1P7Y A;  2J2M A;  3TTV A;  5GKN A;  4QOO A;  3RE8 A;  3E4W A;  3J7B A;  4CAB A;  3EJ6 A;  1GWF A;  1TH4 A;  8CAT A;  1GG9 A;  1GGK A;  3P9S A;  3PQ6 A;  1TH3 A;  3NWL A;  4QOM A;  3PQ5 A; 
#chains in the Genus database with same CATH homology
 2A9E A;  1GGE A;  2ISA A;  1GGJ A;  2CAH A;  4AJ9 A;  3TTW A;  2IUF A;  1SY7 A;  4ENU A;  4B31 A;  1F4J A;  3TTX A;  4AUM A;  4QON A;  3TTT A;  3TTU A;  3PQ7 A;  4ENP A;  4AUE A;  3PQ2 A;  2IQF A;  3P9R A;  4ENS A;  4QOR A;  4B5K A;  1GWH A;  1P7Z A;  3DY5 A;  1P80 A;  4ENT A;  4ENQ A;  1GGF A;  4AUL A;  3HB6 A;  1NM0 A;  1E93 A;  4B2Y A;  4B7A A;  3PQ8 A;  1QWS A;  3PQ4 A;  4BIM A;  3ZJ4 A;  1P81 A;  4QOL A;  3VU3 A;  4QOQ A;  3P9P A;  1M85 A;  1H7K A;  3PQ3 A;  1CF9 A;  4ENV A;  1A4E A;  4B40 A;  1U5U A;  4QOP A;  4BFL A;  4ENR A;  1M7S A;  2CAG A;  4AUN A;  4ENW A;  3P9Q A;  3ZJ5 A;  1MQF A;  1HBZ A;  1SI8 A;  1QF7 A;  1GGH A;  1QWM A;  2XQ1 A;  1IPH A;  1GWE A;  2XF2 A;  5BV2 P;  4E37 A;  1H6N A;  1QWL A;  1P7Y A;  2J2M A;  3TTV A;  4QOO A;  4CAB A;  3EJ6 A;  1GWF A;  1GG9 A;  1GGK A;  3P9S A;  3PQ6 A;  4QOM A;  3PQ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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